mkrn1 (mkrn1)


Basic Information

Item Value
gene id mkrn1
gene name mkrn1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26171320 ~ 26196510 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU312666
cccGCACTCCCCTTGTATTGTGGCAGTGCCTTTAAGCAGGCCATTACTAAATGaactttaaaaggaaaaaaagacaaaaaaaattctaGTACAAGTCAGTGCGCTCGTGCTAAACATTTTCTAGACTTCTATCCTCGTGGGTCTTTCTTGTGCGGTTCATGTTGAAAggaaaaacagtaaaatgacacaaaaagAACTCGATATAAGATTTAACTACAAAATTATAACTTTCTTCAAATAATGCTAATAAACATTGTCAAGTTTATTTGTGGGTGTGGGTTTGACTGGTTTATCGTCTACCCAGGTGTTAATAACGTACTTCTGAGACTCTGAGGATGCACTCCAACTTACTCAGCACCATATACTGTAATCGTGATGGGCATGTTGTAAGATTttacttcattttattttatttttttttcttctttattaaAGCTGCTGATGGCCAATATATTGTGCTGATGTTTAAATACATTTACCATAATCATTTTCATGTTGTACTGAAAAGTATTCACTGTggccacttttttttctttttttcttttcagggtTACAAAAAGTCTCTGATGAGGCATTCAGATCATAATTGGACACAGACTGTCCATCAAAGCCCAAACAATGAAACTCTTGGAAGGTTTGTGGCTGATTTTTAAAGCAGGATGACCACCCTGATCCTCAATAGCCATCTTTGTAACTCAAGTCATTTCAGTGACCGAGCAGCTCGTAAAATTTGTTACGCAGCAAAtggttgaaatatttcaacaagaTTTACAAAAGCTGATCTACAACAATAGGGTTTGAACTGATGATGATCAGATGATGATCAGATGATACTGATTTGATCCCAGAGAGTTCTGCTCAGTGCTGCCACTGGTGGCCGGAAGCCGTATTACAGCTATACTACTGAACACAATGGTACTCACCTTTCCACATCTTCCAGCCACCAGTGGCAGCACGGAGCACACACACGCCGTCTTCAGTAACGCATTTTATTGCCTGCTCAGGGACTCGAGCGTCGTGAGAGAGGACACTTATACATTGTATGACAGGTCCTGGATCAGGGCTATGGGTAAAACATCCTGCGTACGCCCACCCCCAACCCCCTCCTtcctgtctctcacacacagagacacctgTCGCCTATTGAAGTAATCTGGGAAAGATTCTGCTTTTAAATGAAGAATGAATTTATTGTGCAATTAATGTGAAATGTTACGTCAGGTTTTCCAGATACTTTTGGTTTTCTGTGATAGAACTACATGTGGTCCAATTGGCTCCATATATCAGTATGACTGCTACGTCAGTCAGAGACTAAATAAAGAACTTTTATTTAAACTCTTTTGTTCCCTCCCCACTCTCCCCCATCCTGAATCTCAGCATCAGGAACACCCGGTTGTACCTCAGAACCAGGCTATAAGAGTCCACCCTATAACTCCTCAGCAGACCTGCAGTGCAGAGAATCATGGAGCTGAGACTGAGGCTTTAAATTGACCACAACCACCAGTGTGAAGTGTAGGTTCACTGCTCTCTGTTGGCTTCGCTGAGTAATGCTTTGCTGCCGAGACAACCTGTTAAACTCCGTTGGAATGCATATGTTTATACTGAAATGTGTGTTTTCTATGTTCCACAGCCATCCATCTTAACTTGAAATTAAAAGTTTATTATCAACCTCTGTACTGTGTGGAGTCTTAATCTTTTTGTCTGTTTGAATtccagagtaaaaaaaaaaaaacagcagtacaACTCCACTGTCATCTGCTCAGAGCAGCGTTTAGCAGCTGAAGAGACAAGAGGTTTCCCCCAGGagctggtggagaccaaaacagagccaATATTGGACTagcattcatcaggtggacacaaacactaCTCTGAACGTTAATGTTACTCTGTCTGCTGGATGAGTAAACAGGCCACGGTTTGCCAGGCTGTTTACTGTGGCAGCTATGTGCAGCG
>TU312668
TCCGGCTGTAGCTTCTCAACATAAACAGCAATGGCGGAGGCAGCAGCAGCGTCTACGGCGGCTACCCCAGTAACAGGAGGTTGGACCAAACACGTAACTTGCAGATATTTCATGCACGGTCTTTGCAAAGAAGGAGACAACTGTCGATATTCACACGATCTGACCAACAGCAAACCTGCAGCCATGATTTGCAAGTTCTTCCAGAAGGGAAACTGTGTGTTTGGGGACCGTTGCAGGTTTGAACACTGTAAACCGGCAAAGAACGAGGAGTTGCCACCCTCCCAGACGCTGCCGCTGCCCTCTGTCTCGCTGGCCGCCTCGTCAGACCCAGAACCCAGTGGGCCAACACCTGGTTCAGGGGCACAAGATTGGGTCAACGCTGCAGAGTTTGTTCCTGGACAGCCGTACTGTGGACGGGCTGAGCCGGTGAAGGGGGAGAGCTCCGTCCCTCTCATTGAGGAGTTTGACAGCGAGGCATCGCAGGACAAAGAAGCGTTGAGGAAGCAGCTCTGTCCGTACGCAGCTGTTGGAGAGTGCCGCTATGGAATCAACTGTGCCTATCTCCACGGCGACGTGTGTGACATGTGCGGCCTCCAGGTGCTCCACCCCACTGACAACGCCCAGCGCTCAGAGCACACAAAGGTAACGCTTACAGAAACATTAACCATGCTGGGCTCAACGTTCACTCTCCCACTTTATCGC
>TU312692
TGCGTGATGATTGGAGGGTCTGTCGAAGGACTGTATctccttttgattgacagcgattttgtactataaaaagTTGCCGAAGCTGTTCAACTTCAAGCAGAGCTCAGCTCAGTCCCATCGCGGATTTTACAAGTCTAGTTGAAAGACGAACTGCTACAACCTGTTTCTTGGTATTTGCCTGGCGAAATTGCTAGCCAATattcatcatacatttcatacaattatacaccacattccttgtttcagtttaacctaATTCCTACATTTCCTCC
>XM_039791794.1
CTGAATCGTAGCCGTCCGGAACATCCGGCTGTAGCTTCTCAACATAAACAGCAATGGCGGAGGCAGCAGCAGCGTCTACGGCGGCTACCCCAGTAACAGGAGGTTGGACCAAACACGTAACTTGCAGATATTTCATGCACGGTCTTTGCAAAGAAGGAGACAACTGTCGATATTCACACGATCTGACCAACAGCAAACCTGCAGCCATGATTTGCAAGTTCTTCCAGAAGGGAAACTGTGTGTTTGGGGACCGTTGCAGTGATAGCTTGGAGAGAGACAGGCtaggcaggagagagagagaagggacgacatgcagcaaagggcccgtGCTGGAATCCAACCCCCGGCCGCTGAGGTTTGAACACTGTAAACCGGCAAAGAACGAGGAGTTGCCACCCTCCCAGACGCTGCCGCTGCCCTCTGTCTCGCTGGCCGCCTCGTCAGACCCAGAACCCAGTGGGCCAACACCTGGTTCAGGGGCACAAGATTGGGTCAACGCTGCAGAGTTTGTTCCTGGACAGCCGTACTGTGGACGGGCTGAGCCGGTGAAGGGGGAGAGCTCCGTCCCTCTCATTGAGGAGTTTGACAGCGAGGCATCGCAGGACAAAGAAGCGTTGAGGAAGCAGCTCTGTCCGTACGCAGCTGTTGGAGAGTGCCGCTATGGAATCAACTGTGCCTATCTCCACGGCGACGTGTGTGACATGTGCGGCCTCCAGGTGCTCCACCCCACTGACAACGCCCAGCGCTCAGAGCACACAAAGAGCTCAGCTCAGTCCCATCAGAAAGACATGGAGATTTCATTTGCCATCCAACGCAGCAAAGACATGATGTGCGGTGTGTGTATGGAGGTGGTGTTTGAGAAGGCCAACCCAAGTGAGCGCCGTTTTGGCATCCTCTCCAACTGCTGCCACTGCTACTGTCTAAAGTGCATTCGCAAGTGGAGGAGTGCCAAGCAGTTTGAGAGCAAAATCATCAAGTCTTGTCCAGAGTGTCGAATCACATCCAACTTTGTCATCCCGAGCGAGTACTGGGTGGAGGATAAGGAGGACAAGCAGAAGCTCATCCAGAAATACAAGGATGGCATGGGGACGAAACCGTGTCGATACTTTGACCAGGGTCGCGGAACGTGTCCTTTTGGCTCAAATTGCTTCTACAAGCACGCCTTTCCAGACGGTCGGCTGGAGGAAGCTCAGCCTCAGCGAAGACAGACCGGATCCAACAGCAGGAATCGGCTCGGCGAGCGCTTACGGCTGTGGGATATCTTCGACGAGCGGGAAAGCAGCGACTCATTTGACAACGAGGACGAGGAGATGGTGACGTTTGAGCTGAGCGAGatgctgctgatgctgctggcTGCAGGAACCGACGACGAGGTGACGGACTCAGAGGATGAGTGGGACTTGTTTCACGAGGAACTGGACGATTTCTATGAGATTTACCTATAGCGGCCCCCCTCGCCAAtctctccccccaccccctctctcccccaccCTCGTGTATACTACACACTAGAATGGACTGTCTTGTGCGAGTGATGGACAGtagctcccccccccctccctcccccacccGCACTCCCCTTGTATTGTGGCAGTGCCTTTAAGCAGGCCATTACTAAATGaactttaaaaggaaaaaaagacaaaaaaaattctaGTACAAGTCAGTGCGCTCGTGCTAAACATTTTCTAGACTTCTATCCTCGTGGGTCTTTCTTGTGCGGTTCATGTTGAAAggaaaaacagtaaaatgacacaaaaagAACTCGATATAAGATTTAACTACAAAATTATAACTTTCTTCAAATAATGCTAATAAACATTGTCAAGTTTATTTGTGGGTGTGGGTTTGACTGGTTTATCGTCTACCCAGGTGTTAATAACGTACTTCTGAGACTCTGAGGATGCACTCCAACTTACTCAGCACCATATACTGTAATCGTGATGGGCATGTTGTAAGATTttacttcattttattttatttttttttcttctttattaaAGCTGCTGATGGCCAATATATTGTGCTGATGTTTAAATACATTTACCATAATCATTTTCATGTTGTACTGAAAAGTATTCACTGTggccacttttttttctttttttcttttcagggtTACAAAAAGTCTCTGATGAGGCATTCAGATCATAATTGGACACAGACTGTCCATCAAAGCCCAAACAATGAAACTCTTGGAAGGTTTGTGGCTGATTTTTAAAGCAGGATGACCACCCTGATCCTCAATAGCCATCTTTGTAACTCAAGTCATTTCAGTGACCGAGCAGCTCGTAAAATTTGTTACGCAGCAAAtggttgaaatatttcaacaagaTTTACAAAAGCTGATCTACAACAATAGGGTTTGAACTGATGATGATCAGATGATGATCAGATGATACTGATTTGATCCCAGAGAGTTCTGCTCAGTGCTGCCACTGGTGGCCGGAAGCCGTATTACAGCTATACTACTGAACACAATGGTACTCACCTTTCCACATCTTCCAGCCACCAGTGGCAGCACGGAGCACACACACGCCGTCTTCAGTAACGCATTTTATTGCCTGCTCAGGGACTCGAGCGTCGTGAGAGAGGACACTTATACATTGTATGACAGGTCCTGGATCAGGGCTATGGGTAAAACATCCTGCGTACGCCCACCCCCAACCCCCTCCTtcctgtctctcacacacagagacacctgTCGCCTATTGAAGTAATCTGGGAAAGATTCTGCTTTTAAATGAAGAATGAATTTATTGTGCAATTAATGTGAAATGTTACGTCAGGTTTTCCAGATACTTTTGGTTTTCTGTGATAGAACTACATGTGGTCCAATTGGCTCCATATATCAGTATGACTGCTACGTCAGTCAGAGACTAAATAAAGAACTTTTATTTAAACTCTTTTGTTCCCTCCCCACTCTCCCCCATCCTGAATCTCAGCATCAGGAACACCCGGTTGTACCTCAGAACCAGGCTATAAGAGTCCACCCTATAACTCCTCAGCAGACCTGCAGTGCAGAGAATCATGGAGCTGAGACTGAGGCTTTAAATTGACCACAACCACCAGTGTGAAGTGTAGGTTCACTGCTCTCTGTTGGCTTCGCTGAGTAATGCTTTGCTGCCGAGACAACCTGTTAAACTCCGTTGGAATGCATATGTTTATACTGAAATGTGTGTTTTCTATGTTCCACAGCCATCCATCTTAACTTGAAATTAAAAGTTTATTATCAACCTCT

Function

symbol description
mkrn1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in several structures, including brain; eye; gonad; integument; and liver. Human ortholog(s) of this gene implicated in central precocious puberty 2. Orthologous to several human genes including MKRN1 (makorin ring finger protein 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase makorin-1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15687 MKRN; E3 ubiquitin-protein ligase makorin

RNA

RNA id representative length rna type GC content exon number start site end site
TU312666 False 1956 lncRNA 0.41 1 26171320 26173275
TU312668 False 702 TUCP 0.56 4 26180551 26196487
TU312692 False 272 lncRNA 0.41 1 26179118 26179389
XM_039791794.1 True 3241 mRNA 0.48 10 26171603 26196510

Neighbor

gene id symbol gene type direction distance location
tmem121b cecr6,LOC102790305 coding downstream 67 26169109 ~ 26171253 (-)
LOC120553108 LOC106676404,LOC106675180,LOC106675933,LOC106633052 coding downstream 31286 26128814 ~ 26140034 (-)
rergla rergl,LOC104934027 coding downstream 51002 26113800 ~ 26120318 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding downstream 269319 25856640 ~ 25902001 (-)
LOC120553116 NA coding downstream 564732 25603394 ~ 25606588 (-)
tmem178b tmem178b,LOC107725619 coding upstream 65115 26261625 ~ 26364669 (-)
cog5 cog5,LOC102792593 coding upstream 854761 27051271 ~ 27165117 (-)
LOC120553064 NA coding upstream 970920 27167430 ~ 27175049 (-)
tmtc1 tmtc1 coding upstream 1092342 27288852 ~ 27476902 (-)
caprin2 caprin2 coding upstream 1364414 27560924 ~ 27599908 (-)
G230550 NA non-coding downstream 2939 26167341 ~ 26168381 (-)
G230533 NA non-coding downstream 5519 26163958 ~ 26165801 (-)
G230548 NA non-coding downstream 8368 26161491 ~ 26162952 (-)
G230541 NA non-coding downstream 44919 26126033 ~ 26126401 (-)
LOC120553546 LOC107747503 non-coding downstream 480587 25688277 ~ 25690733 (-)
G230557 NA non-coding upstream 12604 26209114 ~ 26209340 (-)
G230586 NA non-coding upstream 58634 26255144 ~ 26255830 (-)
G230582 NA non-coding upstream 59499 26256009 ~ 26258789 (-)
G230596 NA non-coding upstream 185662 26382172 ~ 26382375 (-)
G230634 NA non-coding upstream 401697 26598207 ~ 26598407 (-)
LOC120553115 NA other downstream 569940 25595578 ~ 25601380 (-)
sult4a1 sult4a1,LOC102784496 other downstream 953627 25191261 ~ 25217693 (-)
G229950 gdi2,LOC100708443,LOC102215003 other downstream 2256628 23908556 ~ 23914692 (-)
LOC120553046 NA other downstream 2307346 23858219 ~ 23863974 (-)
LOC120553170 NA other downstream 2459516 23690519 ~ 23711804 (-)
G230594 mrps33 other upstream 179182 26375692 ~ 26381365 (-)
G230730 NA other upstream 920696 27117206 ~ 27118597 (-)
ipo8 ipo8 other upstream 1305590 27502100 ~ 27550712 (-)
LOC120553767 LOC104927640,LOC103363517 other upstream 2144572 28341082 ~ 28430526 (-)
G231126 NA other upstream 2548093 28744603 ~ 28745246 (-)

Expression


Co-expression Network