G230858 (recql)


Basic Information

Item Value
gene id G230858
gene name recql
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27628951 ~ 27631043 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU313030
CCTGTAGCCGAGGGTTATGAATTGTGCATATAGTTACATTAAATTCAAAGAGGCTCTGTAGTCCGAGCCAGCGTGAAGTAAGAAGTCTTTATTTACTTCCACATTGTCCATGGCAGCGCAGCTGTACTCTGTTtttacctttcacaataaaagtccaaCTTAAATTCACTCTGAGCATTACGCTAAAGAGGCAAATCAacaaaataaagacacacaacAACGATGTCAAGTCCAGAGTAAATACTGTAAAATGCTGAGCAGATGCTGCTACTAGCAGAACGCTATGGAGGACAACATCAGTCCGTTCTGCACCGCGACTTAACCGGGGACTTTGAGAGCGAAATTATGGACCTTTGTTTCTCAAGCTTCCTCGTTGGAAGCCAGCTTAGCTATACTGACGCCTACGTCATTACCACAGCAACCCATGCAGATTGGTTGGTGATGTTTGGACACACAAATCCAATCTGATTACTTGGAAATAACAGTGCGGACAAGTTGGATtttcctgcagtctgaacgtaatATAAAAACTCATCTAAAACAAAAGCATCCCATCTGGTATTCCGGCCTGGGAACAAAAATATCCTTAACAACGCAGTAGGAGATGGAAAGTTGGCAAAAATAGATGCATTTGCCCGAGTGAAAAGTTAAATGTAACACTCTACTATAAAAGTAGAAAACCTTAACTGACATTTATGTCGAACATGTTACTTTGTTGTACTTGTTGTTGTTACCTATATCTTACTTAAAGctaatatatatactgtagaggTTACTTTGCACTTTTTATTAACAAAGGTCCTAAACATTTAGGGAATGAATCACTCTCTATACCCCTGTGCCAAATGTCTAatatttatgtttacatttatgTTTATGCAATTTATGTTAACAGAGCCCAAGAGTCTGTTTTGTTAACTGTTTTGCTTGTGTggttttactatttatttaggatttttttttcttcacatttcaATTCCAATATGGAATTGGGAATATTTTCAAGAATGAAAAATGAATTGCTCTTTAAAAGGGTGTATGCGAAATCTGACGCTCATGCAGTTTTGTCAAAGAGTAACGTTGGAAGAGATCAACAGCCTAAGAGGTGAGATGAAGTGAAATAAACAAGTGAATACGTTGTTACCTTGCTACTGGACGCATTCAACATTACTGCGGACACGTCAATGGACTTCAGGTACATGATCTGGTCCTCCATCAGGGACACCAGGGGAGTGACAACCAAggtaaaACCCTTGGAGCAGACTGCAGGCAGTTGGTAGCAGAGGCTTTTCCCTCTTCCTGTGGGCATCACCAGGTACAGATCTTTGCCTGACATGGTCAGGTTGATGGCCCTCAGCTGCAGTGGTCTGAACGTGGAGAGTTGGAACGAGTCCTTCAGGTGCTGCTCCACTTCTTTGGACCATGGAAAAT

Function

symbol description
recql Predicted to enable 3'-5' DNA helicase activity; ATP-dependent DNA/DNA annealing activity; and four-way junction helicase activity. Predicted to be involved in DNA unwinding involved in DNA replication and double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be active in chromosome and cytoplasm. Is expressed in basal plate midbrain region; central nervous system; and presumptive diencephalon. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; lung cancer; and pancreatic cancer. Orthologous to human RECQL (RecQ like helicase).

NR:

description
PREDICTED: ATP-dependent DNA helicase Q1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313030 True 1431 lncRNA 0.41 2 27628951 27631043

Neighbor

gene id symbol gene type direction distance location
LOC120553763 NA coding upstream 356736 27253416 ~ 27272215 (+)
LOC120553521 NA coding upstream 397560 27224262 ~ 27231391 (+)
gpr22a gpr22,LOC103362561,LOC104950263 coding upstream 482160 27138046 ~ 27146791 (+)
ndufa5 ndufa5 coding upstream 577669 27046066 ~ 27051282 (+)
aebp2 LOC103362558,LOC104950851 coding upstream 584534 27019362 ~ 27044417 (+)
golt1ba golt1b,LOC101473753,LOC106532178,LOC103459552,LOC106907182,LOC105929813,LOC102297447 coding downstream 6045 27637088 ~ 27644879 (+)
spx spx coding downstream 16960 27648003 ~ 27651082 (+)
kiss2 NA coding downstream 64581 27695624 ~ 27696717 (+)
LOC120553234 LOC104948514,LOC103363512 coding downstream 218694 27849737 ~ 27959398 (+)
LOC120552999 NA coding downstream 385800 28016843 ~ 28023618 (+)
G230844 NA non-coding upstream 17948 27610407 ~ 27611003 (+)
G230843 NA non-coding upstream 21392 27607011 ~ 27607559 (+)
G230791 NA non-coding upstream 88705 27501846 ~ 27540246 (+)
G230790 NA non-coding upstream 131350 27497235 ~ 27497601 (+)
G230789 NA non-coding upstream 132257 27496196 ~ 27496694 (+)
G230866 NA non-coding downstream 24977 27656020 ~ 27738199 (+)
LOC120552997 NA non-coding downstream 68020 27699063 ~ 27702637 (+)
G230878 NA non-coding downstream 128555 27759598 ~ 27760115 (+)
G230879 NA non-coding downstream 131833 27762876 ~ 27779078 (+)
G230881 NA non-coding downstream 148313 27779356 ~ 27800032 (+)
G230842 NA other upstream 25249 27603005 ~ 27603702 (+)
LOC120553194 NA other upstream 556399 27069077 ~ 27072552 (+)
LOC120553759 NA other upstream 657098 26693356 ~ 26971853 (+)
mrps33 mrps33,LOC106591474 other upstream 1247842 26372714 ~ 26381109 (+)
arhgef39 arhgef39 other upstream 1522128 26038188 ~ 26106823 (+)
G230904 NA other downstream 310278 27941321 ~ 27947473 (+)
G230975 NA other downstream 426688 28057731 ~ 28058218 (+)
trnat-ugu_41 NA other downstream 839763 28470806 ~ 28470878 (+)
trnak-uuu_24 NA other downstream 840063 28471106 ~ 28471178 (+)
LOC120553833 NA other downstream 870191 28501234 ~ 28501419 (+)

Expression


Co-expression Network