col7a1l (LOC103371861,LOC108235101,LOC106515058)


Basic Information

Item Value
gene id col7a1l
gene name LOC103371861,LOC108235101,LOC106515058
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 12353644 ~ 12412870 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791002.1
ctctcagtatacaGAAAGGAAAGGATGGTGAGAAAAGTTCCATTCCCACTCAGAAGAAGCTATGGTATGACCAAGGATTTACTGCATGTTGCAGCAGcttcacccccacccctcttCCCAAACTTTTCTGCACTACAGCAGAACCCAGGAAAGAAAGTCCCTGTCATTCATTCACTtttacacacattcaaacacacccacctcctctttcactccgacacacaaacacacagataacgCACATTGATTCTCATGTAACATTCAGTCGATTATCTCTGATAACAGCCTCTGCAGGAATACAATATCAAttccagactttttttttgtcccctGACTTGGATAACAcctttttgtgtattttaggGAGTATTTTTCCCCTGACGACCGCCAAGAAGTCACCTGGATTGGGAGGATAATAATGATTCACTTGTCTGCATTGATAAGAGGAAAGAAGAGTTGGAATTGATGATTGTGGAGTGGAATTTAAGAAAGGGATTTGTGAAGAGAAGAACTGCGAGGAAGAGCAGGTGATCGAAGAGGAAGAGTATGGGCCGCTCTTCTTTGTGGATATTTCTACTGTCCTTTTCTCTTACCCATCAAAGCATCACAGCACAAGCTGAAGCATGCAGGACGGTGGTGCAGGCAGACATAGTGTTTCTGGTGGATGAGTCATGGAGTGTAGGCCCGACCAGCTTCTCCAGTGTCAAAGACTTCATCTCAACCATCGTCTCCTCCTTCCAGGACATTGGGGTGGGAACTGAGGGGGTCCGCTTTGGAGTTACTGTCTTTGGGGATTTCCCAAGGATGCAGATTGCTTTGACAGACTACAGCTCACTGGAGGAGTTACTCAGAGCCATCAAAGACCTCCCCTATGAGGGTGGATCCAGGAGGATTGGAGATGCCCTCCAGTTTCTGGTTGACCCCGTGTTTAGCCCTGTCATCAGGCGAGACCATGCCCCAAAGATTGCTGTAATGATCACAAACGGACGTTCAGACGACCAGGTCGATGCCGCAGCTAGAGCTGTAGCTGATAATGGGATTTCTCTCTTTGCAGTAGGTATTAGGGGAGCTGATGAGTCAGAGCTGAGGAGGATTGTGTCAGAGCCACATGAGGAGCACCTATTACTTGGCACTGACTACTCTCTCCTTGAAACCATCCTTCCCAAACTGTCCCGCAGAGTGTGTTTTACTGCCTCTGAACCACCACTTCCTGTGAAAACTACCCTGCCTGTTGAAGAGCGTGTGGTGGGTCCCAGAGACCTGCAAGTAAGCGAGTTGGCCCACAGTTCCCTCAGACTGACATGGAGCCAGGCCACAGGTGATGTCACAGGATATCGTCTCCTGGTCCACCCTCTCAGCTCCAGTGGACACCAACAGCAGAGACAGGTTGATCTGAAGGCAGATGTGAGCACAACAGTGGTGACAGAGCTGAGTCCTAAAACAGAATATTCCCTCACTGTCTACGCCATCTACCCCAGCCTCATAGGAGACTCAGCAACAATCACCATCCAGACAACCCCTTTGCCTCAGGTGTCAAACTTCCGTGTTATTGAGGAAGGCCTGTTCTCTCTGCGCCTGGGCTGGACGCCTCATCTAGGGAGGCTCAACGGATTTATGATCTACATCCCAAGATCCAACCGACCTGGATTTGCTTATGAGAAGATGCTTCCTGGAGACACCTCTTCTCATGTGATTGACAGCCTGGAGGAGGATAAGAAGTATACTGTCAGTATTTATGCTGTTTACCCCCAGGGACCAAGTGAAAAAGTTTCAATAGTGGGCAAGACATTAAAGCTGGTACAAGTTCAGAAGTTCCTGGTCCAAAACGCCACCACAGATACTGTCCAGGCAAGATGGACATCAGTTAAGGGTGCCACAGGATACCGTCTGACATGGGAATCCCCAGACGGCCACATAGAGAACGTTAACCTCGGGGACAACTTTAACTTCTACATGATCCAGGGCCTCCACTCAGCCTCTGAGTACAAGGTCACCATCAACCCCATCTTTGGAGACATTGAGGGGCCGGTCACCACCACCAAAGTCAAGACATTGGAAAGCAGTGCAGTACAAACCTTAAAGGTGTCTGCTGTGAGCACCAGTACTGCTGATGTCGCATGGAACAGTGTCCCAGGAGCCACAGGTTACAGACTGGcctggggaccaactccagagTTTGTTGGTCGGGACCGTCCCAGGCAGGTGGCTCTGAACGGCAGCACCACAGAGTACCAGCTGAGGAATGCAGCCCATGATACTGAGTATGTCCTGTCTCTCTATGTGCTGTTTGGATCTGTGGTGGGGCCTGGTATCAGTGCTACCTTCAGAACTTCTCCGTTAGGGTATGTGTCCAACTTCAAGGTGTCATCCTACACCAGCACCTCCGTAGTTGTGGAGTGGAGTCCCATTGTTGGAGCTACTGAGTACAAACTGTCTTGGAACACAGGTGATAGCAACCCTCAGTCCCATTACCTGGGCCGCAGTGTTCTCTTCCATCGTATCAAAGACCTGAATCCAAAGTCCACCTACACAATCACCATCTGTGCAGTGTACGGCAACTCAGAGGGACCAGAAATCTCCTTATCTCAGCTCACAGCTGCTGTTTCAGACTCACAGCTATTCCAGGCAGTGAGGGAGGTAAAGGTTGTGGACATTGGAGTCAACTCCTTCACTCTGTCCTGGGGGAAAACACCAGGGGCATCTGGGTACAAAATCTCCTGGATCCCCTTCCTGGGGGGTGATGAAATGTCCCACGTGGTATCTGCTGCTTCCACCACTTTTACCATCCACAAGCTGCAGGAGAGCTCAGCTTATAAGATCCAGGTTTCCTCCATGGTGGGCAATAGGGAGGGAAGCCCAGTCCTGCTCACTGCACGCACCTTGGATCTTCCAAAAGTGAATGACTTTGCTGCTCTGAACACTTCAGAGAGCAGCACTGTTCTGAACTGGACACGTGTGGCTGGCGTTTCTGGATACCGTCTCTCCTGGAGGCACATCTCAGtGTTGGAGACGAAAACAGAGACGCTGGGCCCTGGTTTCAACTCCTTTATGATCAGTAATTTGCTGTATGGAAGAACCTATATTTTTACCATCCGACCATTGTATGGAGAAGTGGAGGGCCCTATAAGCACTATTTATCAGAGAATATTGGGACAGGATGGCCTGGGGGTGACAGTCCAGTCTGTGGCAGCCACAGTCGCCCCTCATATCACGACTGCCTCCATCACAGACACTACCGTCACTCACACATCCTCCAGGACCACCCGGCACCCCATCGCTGTGCCACAACCTAAATCCATAACCACCAAGAAGACAGGTCAGCCAAGTGTCACTGAAGCCAAAGCAGCTGAAGCCACCTTCCTTCGATTAACCACACTTAGTGCAGAGACAACAGCTGCACCAAGACCAGTGTGTGGTAAGACCAAAGCAGACATAGTATTTTTAGTGGATGAGTCCTCCAGCATCGGGGCAAACAACTTTATCAAGATGAAAGACTTCATATTCCGAGTGGCAACTTACTTCCCTATCATTGGTCCTCAGGGCACACAGATAGCCGTAGTTCATTACAGTGATGAGCCTCGAATTGAATTCCGTCTAAGAGACTTCAAAGACAGAAACTCTGTGCTCAGGGCGCTCAGAGCCCTGCGTTATGGAGGGGGCAACACCAAAACAGGAAAAGGCATCAGCTACGTTCTACAGGAACTGTTCCAGGAGTCTCTGGGGATGAGGCAGGATGTGGCCCATGTTCTGGTTCTGATTACAGATGGCAGGGCCCAGGATAATGTGGTGCCACCCTCTAGAATTGCACGTGCTCTGGGTGTCAGTGTCCTGGCAGTTGGAGTTTCCAATGCAGACATTGAGGAGCTGAATAAGATAGCAGCACCCACCAGCTACAAAAATATCTTCTACTCACCAACCTTTGATGACTTCCCTTCCATAGAGAGAGAATTTATTAATATCATCTGTAGTGAAGAACTCCTCTCCGAGTTCAAACTAAATTCTGAGTCAGCTCAGTTGGACACCCCGACTGAAGACCCAGAGGAGCTGCTTAAGCCTCAGGGTCCCTGCTCCTCCCAGTGTGTGAAGGGCCAGAAAGGGGAAAAGGGAGATGGTTCTGGTCTCGGAGGTCTGAGATTTAGGCAAATCCCTGGACAGTATGATCCTTTCACTCCTTCCAAAGGAGAGAAGGGAGAAAGGGGGCCTCCTGCAACAGATGGTGTACCTGGGTTGCCAGGACGACCAGGGAGAAGTGGACCCCCAGGTTCTGCCGGCCAACGGgGCCCGCAAGGCATACCAGGTGATATGGGTCCACCTGGAAGCACTGGTCCAAAGGGACAGAGGGGAGAAAGAGGAGAGCCTGGATATGTTATAGCTGGCACAGACGCAAATTTTGTTCCTGGACGAAAAGGAGAGCCAGGATCTTCAGGTCCCCAGGGCTCTCCTGGTGTATCAGGGGTCAATGGCGCTCCAGGCCTACCTGGCCAGCCAGGACCACCAGGGTCACCAGGAATATCTGTCAAGGGAGATCCTGGGGAGGTGGGAGCAAAAggtTTACGTGGGAAGCAGGGTGTGAAAGGAGACAAAGGAGAGTCGGGAAAAGATGGTTTTGCAGGTTTGCCTGGTCCCGTTGGCATTGATGGGGTGCCAGGGTTACCAGGTCAGAAAGGAGAGCAGGGTAAAGAAGGAATTGGCATACAAGGTATTCAAGGTCCTCGTGGAGAGCCTGGAGAGAAGGGAAATATTGGCTTAACGGGACCAGTTGGCCCAAAGGGTGACCGTGGAGAGCAGGGCATCCAAGGACTCATCGGACCACGGGGAAAGAAGGGACTCAAAGGGGAGCAGGGGGACAAGggagaaggaggagagatgggACCATTAGGACCACAAGGACCCACGGGGCTGACGGGGCCATTGGGGTTAAAAGGAGATGAGGGTCCAAGAGGAGCCCCTGGAGATCCTGCCAAGGgtATAATTGGCCCAACTGGAAAAAAGGGTGCCAGGGGAGACATTGGTCCTGTCGGCCCCACAGGCCCCCAGGGAATAAAGGGTGAACAAGGAAACAAAGGAGAGAAGGGCAGTCCTGGTTTTGGGATTCCAGGACAGCGGGGACCAAAGGGAGAAAATGGCGAGAGGGGAAATGTTGGTTTGTCTGGAAAACCTGGACCAAAAGGGCACGATGGCTCCAAAGGTGACAAAGGGGCAGCTGGGTTATTCGGCAATCCTGGAGAACCAGGATTAAGAGGTAAAGATGGTGCATCGGGAACTAAAGGAGACCAAGGATCTAAGGGTGAACTAGGAGCACCTGGAGAGCCTGGTGAAAGAGGAATTAGGGGTCCACTGGGGTTACCAGGGCGACCAGGGGACCCAGGAGATAAAGGAGATACTGGGATGCCCGGCCCGCTTGGGACTGATGGAAAGAAAGGCGACAAAGGGGAGCAGGGAAAACCTGGACCTCCGGGAGAACAAATTGTTGTAGACAACAACATACTGACCAGAGTGATTAAGGGTGAACCAGGAGAGCCTGGTGAGCCTGGTTTGAGAGGAGAAACAGGTGTGCCTGGGCCGAGAGGTCCAGAGGGGAAACCTGGATTACCAGCACCATCTCtgGATGGTTCTGAAAGAGATGGACCAGGGAAACCAGGAATAAAGGGTGACCAGGGACAGAAAGGAGAGCCTGGTCTGAGGGGACATAAAGGAGACCAAGGACGGTCTGGGATAGCTGGAATGCCTGGTTTACCGGGAACTCCAGGACGACCTGGAATTGATGGGAAGAGGGGCCAGCCAGGAAAAGATgGAGAAATTGGGCTGAAAGGAGATGACGGCAAAAagGGGGACAAGGGAGACGGGGGTGCAAATGGTAAAGATGGTAGTAAAGGGGAACCAGGACCTCCAGGTTTGCCTGGTAGGCAAGTGCTTGTCACATCCGAGggTGCCACCATTGATGAAATCCGAGAAGCATTTCCAATCCCGATGGGTCCCCCAGGAGCTACTGGTTCACCGGGAACAAAGGGAGATAAAGGAGAAAGAGGCCTTAAAGGAGACACGGGTGATGCTGGAGCTCCTGGAAAATCTGTTGAGATGAAGGACATTGAAGTGATGTTTGAAGCCTACGGCATAAGGCTGCCTTTGCTGAAGGCTTTGATTGACCGGCTGCTGCAGGACGGAATAGAGGAGCTGCTTCATGTGCTCAGCACCTccaagaaaatgaaagaaaacacagaaactCACACCTCCAACGTCATCACTGAGTACACAAGTTCAGTGAAGTTTGACCTCACCAGCCAGCCGCTGAAAGAGTCGGACACCATCCAGGGCCCTGATTTAGATGGACAGCTTTCTAAAGAGTCTCTGACCATTGATCCTTTAAATGAAACAGCAGAGGGTCCCACTGTATGGAGCTTCACCACGCTGAACGGAGAGCAGGAGCTCGACCGAACTGAGACACAGTTGAAGGGCTCCAGTGGGAAGCAGAGAGTATATCAGCACAGTGACGGAGTATCTGCACTCAAAATGAATCGGACTGTAGTCAATTCTACTTTTAATTATAATACGACCCAGGAGACGGTTTCAGAAACTGTGGCGGTTCTCCTCACTCAGGAAGACTCCCTGAAGAAGAACTCGggacaaaagaagaagaagGgcaaaggaaataaaggacGACATAAGAGGCAGAGACAACGCCTGACAAGTGAGGAGGACACgcaagaagaagaggaagaggatttTTATAACGGCGAAGAATACGGTTATGAATACGAGgaAAAAGTTTCCTCAGATTACCCTGCGACCTCTCAGGAGAGGAAAGACAACAGACAGCTTGAAGTTCAAACAGATGCAATTCCCCATCCAGTGGATAAAAAGGAGGAACAACCCACACACAGTCCTGCCCAGTTAGAAACGTTGACGGGAACCTCCAGTTATCCTCTAACATCCTCCACAAACAGACAAATAGATGCACAGGATGAAGTTTCACTTCCTACACCTCCCATCACAACAGATGAACCAGACAAGgatgTCTCTTAAGTCCCAAGAGACTGTGACTATAGAGTGTTAAGCATTCATAAGATAGCACACACTACATGGAGCGTGTGAATAAACTGTGAACTGTTTTGCTGATGAGGAGCCCTGAACCTGAGGAAGGACTTCTTTCCACACAGAGACGAAGTCACTGACCCAAAGCTATGGCCAAAGTTCATATCTTGTATGATGGCTTTTATTTCAAGTAGCACTCTATAGAAAATCAGGCACTGCTGTTAAATTATCAGAATTTTTTTCTCATGTCCGGGTTATTTTCATTCTTCACTTTGTTTAAAGTAAACCACAGTGTAGCCTTTACCTCATCTACAActactaatttatttattaagacAAATCTGTAACAAATAAATATCACATcagataaaacacaaaaaccttgtgccaacaattttaataaatttaCTTTTGACAAGTTGTATtgaaattttatttattgtttttattattgtgtttttactTCACCGAACACCTTTGAACGCCAATGATATTACTCAGAATGTAGTGGCATATAAGCATATCTGTAGCCAGAACAAACCAATTTTTCACTGGTGAAAATGTTCTGTTATTatgttgttttgtctgtttaaCCTCTGTGCATGTATCCTTCagtaaaaaaatttcaaataac

Function

NR:

description
PREDICTED: collagen alpha-1(VII) chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791002.1 True 7666 mRNA 0.49 81 12353644 12412870

Neighbor

gene id symbol gene type direction distance location
si:dkey-117n7.5 LOC103382769,LOC107385417 coding downstream 4384 12333944 ~ 12349260 (-)
ucn3l LOC103371858,LOC106936223,LOC103146475,LOC103460978 coding downstream 23645 12327666 ~ 12329999 (-)
copg2 copg2 coding downstream 27874 12316147 ~ 12325770 (-)
LOC120553762 LOC103374597,LOC102209562,LOC104923710,LOC101480655,LOC100694855 coding downstream 255339 12093538 ~ 12098305 (-)
iqsec3a iqsec3,LOC102789444,LOC102305902 coding downstream 269854 11981998 ~ 12083790 (-)
lrguk NA coding upstream 2944 12415814 ~ 12433137 (-)
exoc4 exoc4 coding upstream 21026 12433896 ~ 12554663 (-)
zc3hc1 zc3hc1 coding upstream 654543 13067413 ~ 13075321 (-)
cax1 LOC103382807 coding upstream 670370 13083240 ~ 13094167 (-)
smo smo,LOC102780724 coding upstream 686367 13099237 ~ 13108249 (-)
G227407 NA non-coding downstream 384166 11966652 ~ 11969478 (-)
LOC120553250 NA non-coding downstream 404443 11944330 ~ 11949201 (-)
LOC120553249 NA non-coding downstream 446824 11895643 ~ 11906820 (-)
G227384 NA non-coding downstream 521967 11831029 ~ 11831677 (-)
G227314 NA non-coding downstream 530940 11812483 ~ 11822704 (-)
G227488 NA non-coding upstream 226564 12639434 ~ 12639775 (-)
LOC120553123 NA non-coding upstream 487444 12900314 ~ 13004473 (-)
G227627 cpsf6 non-coding upstream 994966 13407836 ~ 13454828 (-)
G227629 cacna2d4a,cacna2d4 non-coding upstream 1027122 13439992 ~ 13441507 (-)
G227636 NA non-coding upstream 1051240 13464110 ~ 13472016 (-)
G227429 LOC104958361,LOC103370548 other downstream 65490 12284926 ~ 12288154 (-)
cracr2ab LOC102301749,LOC103365394 other downstream 504703 11837248 ~ 11848941 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other downstream 676812 11617355 ~ 11676832 (-)
hgfa LOC103365344,LOC104958230 other downstream 871066 11458581 ~ 11482578 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other downstream 1372385 10980198 ~ 10981259 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other upstream 625281 13038151 ~ 13066528 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other upstream 713298 13126168 ~ 13344461 (-)
LOC120553407 napepld,LOC106940535 other upstream 1073016 13485886 ~ 13508247 (-)
LOC120553470 wnk1 other upstream 1103637 13516507 ~ 13617756 (-)
LOC120553486 NA other upstream 1230713 13643583 ~ 13659272 (-)

Expression


Co-expression Network