kera (kera,LOC103355179)


Basic Information

Item Value
gene id kera
gene name kera,LOC103355179
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10696480 ~ 10703162 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791003.1
AGTAGGCAACACAAATTCTGAAAGGACATCCCAACTAACACAATCGTCCTCCCACCAACAACACATGCTCCATCCTCTCTGTTCAACCGGCGGCCAAGGTGCAGTATCCTAAGGGGAATCAAACCAAGAAGTCTAACTGGGCTAGACAGTGACACTGTGGACAATCATAAGAGCTATTCATGAGAGAAGCAGAAGAACCAAACCAAACCATACCTGGCTGCATGCAGACCACTCACACTAATTGGAGGAGCAGTTTGGGCAGCGAAATGGCACTTCTCCTGAGTCTTCTCTGCACCTTGTGCCTGGTGGGGCAAGTTCTTGGCCAGGACATGCCTTATGAGGAATATATGGCCCAGATTCAAGCCTGCCCTAAAGAGTGTCGCTGCCCCCCCAACTTCCCTCGTGCTGTCTACTGTGATAATAAAGCCCTGAAGAGCATCCCCAAAATCCCTACACACACATGGTATCTCTACCTGCAGAACAATCTAATTGAGGTCCTGTCAGCAGATGCCCTGCGTAACGCCACACAGCTGCGCTGGCTGAACCTAAACCGCAACAAAATTTCCAGTGAGGGAGTGGAAGAAGGTGTCCTAAGTACAATGTCTCACCTGGCGCACCTTTACATGGATGACAACCTCTTGTCCTCTGTGCCATCTCCCCTGCCAGCTAGCCTAGAGCATCTACTTCTCTCTCGCAATCGAATTTCCAAGATCCCTGCTGGTGTCTTCATTGGTCTGGATAAGCTCAACCTCTTGGACCTCCAGGGGAACAAGCTGATGGATGAACATGTGACTGAGGTGAGCCTGAAGGGTCTAAACAACCTGGTACAGATCAATCTAGCCAAGAACCAGCTGAGTAGTATGCCACTTGGCTTACCACCCACCACTACACAACTTTTCCTTGATGGCAACAACATTGAGAAGATCCCAGCTGGCTACTtcaaaagtttgccaaaagtgGCATTTCTGAGGCTCAACCACAACAAGCTTGGCAGCAGTGGAGTTCcgaaaaatgtgtttaatgtctCCAGCATTTTGGACTTGCAGCTGTCCCACAACCAGCTGACTGAGGTTCCCCTCATTCCCTCTGGCCTTGAACACCTTCACCTTGACCACAACAATATCAAAAGTGTAAGTGGCGCCATCTGTCCTGTCGCCGTCGACACTTTGGATGACTCTATCAATGAAAGTGTTCCTCGACTGCGCTACCTTAGACTGGATGGCAATGATATTAAGCCACCGATTCCCAGGGATGTCATTCTGTGCTTCCGTCTCCTGAGGTCCATTGTCATCTAAAATAAATCCTAATTAAATTCTAATTTCCTTCAACGGATGATGATATGTGAATCCATGCAACAATGGTGATATGAGTaatgtttgcatgtttgtgaaGCTCAAATATTTGACACTAGTTGGCATCAACTTGTTTCATTGCTGTGAATTAGGAAAACGTTCCTTTCAGTTCCAGAAAACATTGATCTTTTTATTGATATCTGAATAAAATCTAAAAGAAAGTACAAAATTTACAAGGAACTGATGGGTTAGAAGCTTTACTGACGCTGCAATCTGTTGACAATTAGATGTGCCTTATTTTGGTGTAAACATCTGCATGTACAATTCAGAATGAAATCTGATTATAATATAGCATGACAGTGATTTAGACAGATAGGAGGACaaaatgtgttgatgacatGTTGAGGACTCATTGTCATTATGCTTCTTTGAGCAGGAGGCAAAGCTTATTAATACATAGGCAAaatatcactttttatttttttctaatatttcaggaaaaccTTTGCTTTATACTTGTAGACTTAAAGCCAAATGAATGATCTTGTGTTCTAGGTTTATGGTCTCTCTACTCTATTCTATAACATGCTTATTTACTGTaggtaatttatttttatttaatattgtggGGAAATAAGTAGAAACCTGTGAATATTCATGGCCAATATTCCTTAAAGTTTTGtaactgtttttaaaaaatgcCAACACACTTTTTAATTCTGGTTATTATTCTGAATAAACTGAGTAAGAGATTTCA
>XM_039791004.1
TGAATGAAATAACTAGTGGTACAAATACAGGGAAGAGAGAGGTACAGCCTCATTATTTGGGACTACGCTTGGTAACTTGCTGAGGAGGAACATAGGCAAGAGGGAATTTACAGAGTTTAAGTTTGGGCAGCGAAATGGCACTTCTCCTGAGTCTTCTCTGCACCTTGTGCCTGGTGGGGCAAGTTCTTGGCCAGGACATGCCTTATGAGGAATATATGGCCCAGATTCAAGCCTGCCCTAAAGAGTGTCGCTGCCCCCCCAACTTCCCTCGTGCTGTCTACTGTGATAATAAAGCCCTGAAGAGCATCCCCAAAATCCCTACACACACATGGTATCTCTACCTGCAGAACAATCTAATTGAGGTCCTGTCAGCAGATGCCCTGCGTAACGCCACACAGCTGCGCTGGCTGAACCTAAACCGCAACAAAATTTCCAGTGAGGGAGTGGAAGAAGGTGTCCTAAGTACAATGTCTCACCTGGCGCACCTTTACATGGATGACAACCTCTTGTCCTCTGTGCCATCTCCCCTGCCAGCTAGCCTAGAGCATCTACTTCTCTCTCGCAATCGAATTTCCAAGATCCCTGCTGGTGTCTTCATTGGTCTGGATAAGCTCAACCTCTTGGACCTCCAGGGGAACAAGCTGATGGATGAACATGTGACTGAGGTGAGCCTGAAGGGTCTAAACAACCTGGTACAGATCAATCTAGCCAAGAACCAGCTGAGTAGTATGCCACTTGGCTTACCACCCACCACTACACAACTTTTCCTTGATGGCAACAACATTGAGAAGATCCCAGCTGGCTACTtcaaaagtttgccaaaagtgGCATTTCTGAGGCTCAACCACAACAAGCTTGGCAGCAGTGGAGTTCcgaaaaatgtgtttaatgtctCCAGCATTTTGGACTTGCAGCTGTCCCACAACCAGCTGACTGAGGTTCCCCTCATTCCCTCTGGCCTTGAACACCTTCACCTTGACCACAACAATATCAAAAGTGTAAGTGGCGCCATCTGTCCTGTCGCCGTCGACACTTTGGATGACTCTATCAATGAAAGTGTTCCTCGACTGCGCTACCTTAGACTGGATGGCAATGATATTAAGCCACCGATTCCCAGGGATGTCATTCTGTGCTTCCGTCTCCTGAGGTCCATTGTCATCTAAAATAAATCCTAATTAAATTCTAATTTCCTTCAACGGATGATGATATGTGAATCCATGCAACAATGGTGATATGAGTaatgtttgcatgtttgtgaaGCTCAAATATTTGACACTAGTTGGCATCAACTTGTTTCATTGCTGTGAATTAGGAAAACGTTCCTTTCAGTTCCAGAAAACATTGATCTTTTTATTGATATCTGAATAAAATCTAAAAGAAAGTACAAAATTTACAAGGAACTGATGGGTTAGAAGCTTTACTGACGCTGCAATCTGTTGACAATTAGATGTGCCTTATTTTGGTGTAAACATCTGCATGTACAATTCAGAATGAAATCTGATTATAATATAGCATGACAGTGATTTAGACAGATAGGAGGACaaaatgtgttgatgacatGTTGAGGACTCATTGTCATTATGCTTCTTTGAGCAGGAGGCAAAGCTTATTAATACATAGGCAAaatatcactttttatttttttctaatatttcaggaaaaccTTTGCTTTATACTTGTAGACTTAAAGCCAAATGAATGATCTTGTGTTCTAGGTTTATGGTCTCTCTACTCTATTCTATAACATGCTTATTTACTGTaggtaatttatttttatttaatattgtggGGAAATAAGTAGAAACCTGTGAATATTCATGGCCAATATTCCTTAAAGTTTTGtaactgtttttaaaaaatgcCAACACACTTTTTAATTCTGGTTATTATTCTGAATAAACTGAGTAAGAGATTTCA

Function

symbol description
kera Predicted to act upstream of or within visual perception. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; corneal epithelial cell; epidermis; and eye. Human ortholog(s) of this gene implicated in arcus senilis; cornea plana; and corneal dystrophy. Orthologous to human KERA (keratocan).

NR:

description
PREDICTED: keratocan-like

GO: NA

KEGG:

id description
K08123 KERA; keratocan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791003.1 True 2049 mRNA 0.43 3 10696480 10703162
XM_039791004.1 False 1917 mRNA 0.42 3 10696480 10699782

Neighbor

gene id symbol gene type direction distance location
epyc LOC104967728,LOC104925085 coding downstream 2184 10674459 ~ 10694296 (-)
si:ch211-244b2.4 NA coding downstream 25296 10666502 ~ 10671184 (-)
si:ch211-244b2.3 NA coding downstream 30994 10660920 ~ 10665486 (-)
LOC120553733 NA coding downstream 60560 10634748 ~ 10635920 (-)
tcp11l2 tcp11l2,LOC102777109 coding downstream 64103 10624020 ~ 10632377 (-)
lum lum coding upstream 4525 10707687 ~ 10712180 (-)
dcn dcn,LOC103382665 coding upstream 22203 10725365 ~ 10745791 (-)
LOC120553735 LOC103355188,LOC104967726,LOC103399077 coding upstream 69094 10772256 ~ 10776872 (-)
btg1 btg1 coding upstream 139410 10842572 ~ 10851811 (-)
fam3c fam3c,LOC103355174 coding upstream 207175 10910337 ~ 10916577 (-)
LOC120553135 NA non-coding downstream 35981 10639747 ~ 10660499 (-)
G227127 NA non-coding downstream 37553 10602594 ~ 10658927 (-)
G227089 NA non-coding downstream 158064 10538204 ~ 10538416 (-)
LOC120553506 NA non-coding downstream 158643 10509731 ~ 10537837 (-)
G227021 pacsin2,LOC102778832 non-coding downstream 470583 10223494 ~ 10225897 (-)
LOC120553801 NA non-coding upstream 237216 10940378 ~ 10942825 (-)
G227190 LOC104968094 non-coding upstream 245496 10948658 ~ 10949164 (-)
LOC120553014 samd3,LOC101476819 non-coding upstream 257198 10960360 ~ 10975333 (-)
G227211 NA non-coding upstream 320246 11023408 ~ 11023880 (-)
G227215 NA non-coding upstream 326682 11029844 ~ 11031005 (-)
G227082 anks1b other downstream 173518 10513494 ~ 10522962 (-)
dram1 dram1 other downstream 1882040 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 1902570 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 2805169 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 3202173 7422165 ~ 7494307 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 277036 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 755419 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 914193 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 1134086 11837248 ~ 11848941 (-)
G227429 LOC104958361,LOC103370548 other upstream 1581764 12284926 ~ 12288154 (-)

Expression


Co-expression Network