caprin2 (caprin2)


Basic Information

Item Value
gene id caprin2
gene name caprin2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27560924 ~ 27599908 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791014.1
CTGGAATTTGACAGGAAATTAACAAGGATCAGATGGCTGCTTTGGAAAAGTACGAGGAGGTGCTGCATAACCTGGCATTTACACGGGAGCTGCACAAAACTCTGGATAGCTTGACTCAGACGCTGCTGAGAGCCCAGAGGAAGgtgaagaagaagcagcagctgGTGAAGGAGGAGGCGGAGAGGAGGCGTCTGAGCACCGTGCTGCAGGTCCAGCACCTCCTCAGCAGCATGCAGCAGGAGCACATCAGGCAGGACCTGCTGGCTGGACGCAACCAGGCGCCCCTCATCTCAGCCAAACGGCTGCACAGCCTGGGTCAGCTCGCCGCCCTGCTGGGAGTCAACAGGGATAACAGGCTGAGTTTAGAGGAGCAGATGGAGCAAGCGGCTCTGGCCTACTGGGACCTGCTAGAGGGGAAAGACAAGCCTGTGGCTGGATCCACATTTAAGCTGTTCAAAGAAGAAGTCACCAGGCTGTTGAACTGCAAGTACTTCAGTTGTCTTCCACCGCCACCCACCAAGTCTCCAGAGGTGCTGCTGAAGTCAAACTGCCACAGCACCACATCAAAGTCAAAACCAAATGAAGATCCTAAGGAGTTTTTCAACAGACTGTACCTGACCGATACGGAGACTCATCCCACTCCGAACTGGAAGGGGGACTTCCAGACCACGAGGGAGCCTCCTGACTCCTGGGATATGGACTTCTCAGATGGACCCACATCACCCCAAGCTGCAGTCCACAAACCATGGAGAGGAGCTGCCACTTTTATCCCCAAAGTCCCAGTCACTACCAAGAAGCAATATGCTGACTGCAAACAGagaaaagaaaggagagtCAAAGGAGAGCAACATGCCAAGTTGGCAGTTGACATGGATATGCCTGCGGAGGTTTTCAACTTTCCATATGCCTTGCCCAAAGACCCTGTCCTGAGGAAGCAGCACCTAGAGGACCTCATGACAAAGATCCATGGCTCCTTCAGTTTTATGCAGGACTCTCTTCTGGATGGTGAGATCTCCCCCACTAATGGCCACCCTAGACTGAAGAGACGGCCGTCTGGCTCTCCATCTCCTCTGGGTCGCACAGACTTGAGAAGCCCAGTCGAAGACCTGTCTGAACCAATGCATTCCACCCCACTGCCTGCCAGGCTTATAGAGTGCAAAGCCAGCCTGACAAATGGGGATCAGTGCCTGGAGACCTGTGACCAGACTTTTTCCTCAATGGACCTACCTCATGAGCCACTGCAGTTGGCTGAAATAAAGAAGTTTTCTTCACCACCGCTGTACCGCAGGGAGTCTATCATCTCGGTTGCTCAGGAGGAGAAGAGCAGTCCTCAGACACCAGTAACGGAGTCAGGGAAGCACTCTCCCTGTAATGGGGTGGCATCTGGCACCTCCACCCCCCCTCAGGGACAAAGTTTCTCTACACCCCCCACCAGGCGAACTCTGACGTCTGCACAGTTTGACAACATCCAGTCAGTCTTCAAGGCGAATGCCTCTTTACCTCAAAATGGGGAATTGAACTACAAACCAGATTCTGCAGTTTTCAATGAACCCAGGTACAGCAATGCCAGTACCCAAACACCACCGGAGATGGCTCCCTCAGAAGACGAACTACAGCTGGTGTACCAGGCAGATTATACGGTGGGTAATGGAGGACCGATCTTCCTGTCCCCTGGCCAATCAAGTGGAAGCGTGGGTCGTCCTGGCCAGTCGTACTACACCAGAGGATCTGTGAGAGGAGGATCCTACCTCCCACAGACTAATCTAAGGGACTCTGGACCTGTCCTCTATGCTGCTAGAGATTCTGGATATCAACACAGCTATAGACGTGGAGGAGGAAGGCGTCACTCGAGTGCAACCTGGAGTGACTCTTCCCAGGTGAGCACCCCAGACAGGGAGGGAACGTTTACAATTGTGGGTCATGACTCTGGTCATGGGGATTCCCTGTCGGTTTCCACCGTGGATGTCCCTCTCACTCCCCACGGCCACCATCACGCCCTGCTTCCCATGCAACTCTACCCGCTCTCCCAGCCGATGAGAGTGGCCTTCAACGCCTCTCGCACTGCCAACTTTGCCCCAGGCAACCTCGACCAGCCCATAGTGTTCGACCAGCTGCACAGCAACCTAGGGGAGATGTACGACACCCACATCGGCCGCTTCACTTGCCCCGTCAATGGAACCTATGTCTTTATCTTTCACATTCTGAAGCTTGCCATCAATGTGCCCCTCTACATTAACCTCATGCGCAACGAAGAGGTGATGGTGTCAGCGTACGCCAACGATGGAGCCCCAGATCATGAGACGGCCAGCAACCACGCCATCCTGCCACTCTTCCAAGGAGATCAGGTGTGGCTCCGGTTGCATCGTGGTGCCATCTATGGCAGCACCTGGAAGTACAGCACCTTCTCCGGCTTCCTGCTGTACCAGGATTGAACTTTTGGTCAAACAAATGGCTCTCTTCTTCCAGTGTGTGGACGGTTTACTTTGTACTAAATGGTGATTTAAACTGACATTTCAGTTTTGTGGTCGGGCTGCATGGCAATGGCCTTTTCACCATAAAGCTCATTCATAAATAAGTTGTCAGTTGCCAAATGATATGATCTGTCCTCTCAGCCATTATCTATATTTGAAATGGGGACTGTGACTACTTGACATAAACCAAATGTAAGATTCCATATGAATGTATACATGATGGTGGTGCTCCCTGTGAATAAGTATAACTGATAACCTGTCATCTTGCTGTGAATCAACCCGTAGTATATCACCTGTTCAGCCCACAGGTCACTTATTTCAGTGAGCACTCCAATGCAATGTTGTGAATTTGTGCCTTGTTTTCTGATTGGCTTTGGATGACTGACCAGATGTTAAATGGCTAATGAACTGAATTATTGGCTGGTTTATCCGATGAATAATAGTTGACCCTACTGTCGCTTGTTGCTGGGCTCCTATGCATTCAGTCTCGCCTTACTGTATGTGAAGCTGAGAAAGGAAAGATTGTGTTCTTGGTGGTGGGTATGGTGTTAAAACACTTAAGGCCAAATTGTTGCACTAACAGACTACTGTGGAGAGATGGAAGTGGTTCCTTGATGTGCCTAAATAAAAGACTCTGTGAAGTTTGA
>XM_039791015.1
GGGTGGGTCTTGTCGCCCCCggcggagcgtgtgtgtgccgGTGGCCGGGTATATAAAGCTATGAGCGGACGCCGGCGTGGCCTCTGCGAGTCAAACATCACGGTTGGCCAGAGGTCGCCCAGTTCGCCACTGTCGGATGTCCAGCGGCTCTCCGGAGAGGATTCAACGCTACAAGTGTGGAGCTCAACATGGTGCAGCTGTCTCCTTCCCCTACCCTGGTTGTCACCCCTCCACCTGAGCGCtcagaggagggggaggaggaccAGGTGATGGCTGAAAGCCCCAAGGTGGGCTCGCCCGGTGGCCTGAGTGCCCTGCAGCTCAGCCTGGAGGCCTGCACTGCCTACCACGGCTATGAGGCCTACATAGAAGATGGTCTCATCTGCCTCAAACACAAAGTCCGCAACTTGGAGAAAAAGAAGGTAGGATTGTTTTGGGGCAGAGAAATTAACAAGGATCAGATGGCTGCTTTGGAAAAGTACGAGGAGGTGCTGCATAACCTGGCATTTACACGGGAGCTGCACAAAACTCTGGATAGCTTGACTCAGACGCTGCTGAGAGCCCAGAGGAAGgtgaagaagaagcagcagctgGTGAAGGAGGAGGCGGAGAGGAGGCGTCTGAGCACCGTGCTGCAGGTCCAGCACCTCCTCAGCAGCATGCAGCAGGAGCACATCAGGCAGGACCTGCTGGCTGGACGCAACCAGGCGCCCCTCATCTCAGCCAAACGGCTGCACAGCCTGGGTCAGCTCGCCGCCCTGCTGGGAGTCAACAGGGATAACAGGCTGAGTTTAGAGGAGCAGATGGAGCAAGCGGCTCTGGCCTACTGGGACCTGCTAGAGGGGAAAGACAAGCCTGTGGCTGGATCCACATTTAAGCTGTTCAAAGAAGAAGTCACCAGGCTGTTGAACTGCAAGTACTTCAGTTGTCTTCCACCGCCACCCACCAAGTCTCCAGAGGTGCTGCTGAAGTCAAACTGCCACAGCACCACATCAAAGTCAAAACCAAATGAAGATCCTAAGGAGTTTTTCAACAGACTGTACCTGACCGATACGGAGACTCATCCCACTCCGAACTGGAAGGGGGACTTCCAGACCACGAGGGAGCCTCCTGACTCCTGGGATATGGACTTCTCAGATGGACCCACATCACCCCAAGCTGCAGTCCACAAACCATGGAGAGGAGCTGCCACTTTTATCCCCAAAGTCCCAGTCACTACCAAGAAGCAATATGCTGACTGCAAACAGagaaaagaaaggagagtCAAAGGAGAGCAACATGCCAAGTTGGCAGTTGACATGGATATGCCTGCGGAGGTTTTCAACTTTCCATATGCCTTGCCCAAAGACCCTGTCCTGAGGAAGCAGCACCTAGAGGACCTCATGACAAAGATCCATGGCTCCTTCAGTTTTATGCAGGACTCTCTTCTGGATGGTGAGATCTCCCCCACTAATGGCCACCCTAGACTGAAGAGACGGCCGTCTGGCTCTCCATCTCCTCTGGGTCGCACAGACTTGAGAAGCCCAGTCGAAGACCTGTCTGAACCAATGCATTCCACCCCACTGCCTGCCAGGCTTATAGAGTGCAAAGCCAGCCTGACAAATGGGGATCAGTGCCTGGAGACCTGTGACCAGACTTTTTCCTCAATGGACCTACCTCATGAGCCACTGCAGTTGGCTGAAATAAAGAAGTTTTCTTCACCACCGCTGTACCGCAGGGAGTCTATCATCTCGGTTGCTCAGGAGGAGAAGAGCAGTCCTCAGACACCAGTAACGGAGTCAGGGAAGCACTCTCCCTGTAATGGGGTGGCATCTGGCACCTCCACCCCCCCTCAGGGACAAAGTTTCTCTACACCCCCCACCAGGCGAACTCTGACGTCTGCACAGTTTGACAACATCCAGTCAGTCTTCAAGGCGAATGCCTCTTTACCTCAAAATGGGGAATTGAACTACAAACCAGATTCTGCAGTTTTCAATGAACCCAGGTACAGCAATGCCAGTACCCAAACACCACCGGAGATGGCTCCCTCAGAAGACGAACTACAGCTGGTGTACCAGGCAGATTATACGGTGGGTAATGGAGGACCGATCTTCCTGTCCCCTGGCCAATCAAGTGGAAGCGTGGGTCGTCCTGGCCAGTCGTACTACACCAGAGGATCTGTGAGAGGTATGGCACGTGGCGCCAAGGGACTGGCACAAACCTTTCGCTCTTCTGGTTGGCATCGAGGAGGATCCTACCTCCCACAGACTAATCTAAGGGACTCTGGACCTGTCCTCTATGCTGCTAGAGATTCTGGATATCAACACAGCTATAGACGTGGAGGAGGAAGGCGTCACTCGAGTGCAACCTGGAGTGACTCTTCCCAGGTGAGCACCCCAGACAGGGAGGGAACGTTTACAATTGTGGGTCATGACTCTGGTCATGGGGATTCCCTGTCGGTTTCCACCGTGGATGTCCCTCTCACTCCCCACGGCCACCATCACGCCCTGCTTCCCATGCAACTCTACCCGCTCTCCCAGCCGATGAGAGTGGCCTTCAACGCCTCTCGCACTGCCAACTTTGCCCCAGGCAACCTCGACCAGCCCATAGTGTTCGACCAGCTGCACAGCAACCTAGGGGAGATGTACGACACCCACATCGGCCGCTTCACTTGCCCCGTCAATGGAACCTATGTCTTTATCTTTCACATTCTGAAGCTTGCCATCAATGTGCCCCTCTACATTAACCTCATGCGCAACGAAGAGGTGATGGTGTCAGCGTACGCCAACGATGGAGCCCCAGATCATGAGACGGCCAGCAACCACGCCATCCTGCCACTCTTCCAAGGAGATCAGGTGTGGCTCCGGTTGCATCGTGGTGCCATCTATGGCAGCACCTGGAAGTACAGCACCTTCTCCGGCTTCCTGCTGTACCAGGATTGAACTTTTGGTCAAACAAATGGCTCTCTTCTTCCAGTGTGTGGACGGTTTACTTTGTACTAAATGGTGATTTAAACTGACATTTCAGTTTTGTGGTCGGGCTGCATGGCAATGGCCTTTTCACCATAAAGCTCATTCATAAATAAGTTGTCAGTTGCCAAATGATATGATCTGTCCTCTCAGCCATTATCTATATTTGAAATGGGGACTGTGACTACTTGACATAAACCAAATGTAAGATTCCATATGAATGTATACATGATGGTGGTGCTCCCTGTGAATAAGTATAACTGATAACCTGTCATCTTGCTGTGAATCAACCCGTAGTATATCACCTGTTCAGCCCACAGGTCACTTATTTCAGTGAGCACTCCAATGCAATGTTGTGAATTTGTGCCTTGTTTTCTGATTGGCTTTGGATGACTGACCAGATGTTAAATGGCTAATGAACTGAATTATTGGCTGGTTTATCCGATGAATAATAGTTGACCCTACTGTCGCTTGTTGCTGGGCTCCTATGCATTCAGTCTCGCCTTACTGTATGTGAAGCTGAGAAAGGAAAGATTGTGTTCTTGGTGGTGGGTATGGTGTTAAAACACTTAAGGCCAAATTGTTGCACTAACAGACTACTGTGGAGAGATGGAAGTGGTTCCTTGATGTGCCTAAATAAAAGACTCTGTGAAGTTTGA

Function

symbol description
caprin2 Predicted to enable RNA binding activity and metal ion binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification and positive regulation of canonical Wnt signaling pathway. Acts upstream of or within dorsal/ventral pattern formation and positive regulation of Wnt signaling pathway. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human CAPRIN2 (caprin family member 2).

NR:

description
PREDICTED: caprin-2-like isoform X1

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process

KEGG:

id description
K18744 CAPRIN2, EEG1; caprin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791014.1 False 3118 mRNA 0.51 19 27560924 27597377
XM_039791015.1 True 3607 mRNA 0.52 21 27560924 27599908

Neighbor

gene id symbol gene type direction distance location
tmtc1 tmtc1 coding downstream 84022 27288852 ~ 27476902 (-)
LOC120553064 NA coding downstream 385875 27167430 ~ 27175049 (-)
cog5 cog5,LOC102792593 coding downstream 395807 27051271 ~ 27165117 (-)
tmem178b tmem178b,LOC107725619 coding downstream 1196255 26261625 ~ 26364669 (-)
tmem121b cecr6,LOC102790305 coding downstream 1389671 26169109 ~ 26171253 (-)
recql recql coding upstream 13468 27613376 ~ 27634574 (-)
gys2 gys2,LOC101474059 coding upstream 50795 27650703 ~ 27692724 (-)
ldhba ldhb coding upstream 104887 27704795 ~ 27732941 (-)
slc25a3a slc25a3 coding upstream 162975 27762883 ~ 27779183 (-)
LOC120553860 NA coding upstream 164486 27764394 ~ 27764592 (-)
G230826 NA non-coding downstream 6425 27553761 ~ 27554499 (-)
G230818 NA non-coding downstream 63359 27497191 ~ 27497565 (-)
G230815 NA non-coding downstream 80557 27480102 ~ 27480367 (-)
G230760 NA non-coding downstream 338500 27222225 ~ 27222424 (-)
G230757 NA non-coding downstream 338911 27210747 ~ 27222013 (-)
G230853 NA non-coding upstream 5551 27605459 ~ 27605806 (-)
G230920 NA non-coding upstream 161547 27761455 ~ 27761660 (-)
G230933 NA non-coding upstream 341124 27941032 ~ 27947477 (-)
G230946 NA non-coding upstream 374777 27974685 ~ 27976238 (-)
G230947 NA non-coding upstream 376602 27976510 ~ 27976727 (-)
ipo8 ipo8 other downstream 10212 27502100 ~ 27550712 (-)
G230730 NA other downstream 442327 27117206 ~ 27118597 (-)
G230594 mrps33 other downstream 1179559 26375692 ~ 26381365 (-)
mkrn1 mkrn1 other downstream 1364414 26171320 ~ 26196510 (-)
LOC120553115 NA other downstream 1959544 25595578 ~ 25601380 (-)
LOC120553767 LOC104927640,LOC103363517 other upstream 741174 28341082 ~ 28430526 (-)
G231126 NA other upstream 1144695 28744603 ~ 28745246 (-)
G231136 NA other upstream 1192097 28792005 ~ 28792745 (-)
G231143 NA other upstream 1234358 28834266 ~ 28837740 (-)

Expression


Co-expression Network