ldhba (ldhb)


Basic Information

Item Value
gene id ldhba
gene name ldhb
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27704795 ~ 27732941 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791027.1
gcctcctccccctcccccactgAAACCCGTTGGGCTCCACACGGACCACACCAGCCTTCTCCTCCCATTTATCTGCCAGCAGCTGGACTCCGCACGCTCTCCTCCACCGGACCAGATAACGGATCATATCAGTCTGCGGAAACGTGTGTAAAAACCTGTGATCATGTCCTCAGTGCTACAGAAGCTGATCAGCCCTCTGGCCAGCAGCCCTGCTGAGCCCCCCAGGAACAAGGTGACCGTGGTCGGGGTGGGCCAGGTGGGCATGGCCTGCGCCATCAGCATCCTGCTGCGGGACCTGTGTGATGAGCTGGCCCTGGTGGATGTGATGGAGGACCGTCTTAAGGGAGAGATGATGGACCTGCAGCATGGCAGCCTCTTCCTCAAGACCTCCAAGATAGTTGCTGACAAAGacTATGCCGTCACAGCCAACTCTCGCCTGGTTGTGGTGACGGCCGGCGTTCGCCAGCAGGAGGGTGAGAGCCGCCTTAACCTGGTGCAGAGGAACGTCAATGTCTTTAAGGCCATCGTCCCCCAGATCGTCAAGTACAGCCCCAACTGCACAATCATCGTGGTCTCCAACCCTGTTGACGTGTTGACCTATGTGACCTGGAAGCTGAGTGGTCTGCCCAAGCACCGCGTCATCGGCAGTGGCACCAACCTGGACTCAGCCCGCTTCCGCTACATGATGGCCGAACGCCTCGGCATCCACGCCAGCTCCTTTAACGGCTGGGTGCTGGGCGAGCATGGAGACACCAGTGtgccAGTGTGGAGCGGTGCTAACGTGGCAGGAGTCAACCTGCAGAAGCTGAATCCTGATATTGGCACTGATGGCGATAAAGAACAGTGGAAGGCCACACACAAGGCTGTAGTGGACAGTGCCTACGAGGTGATCAAGCTGAAAGGCTACACTAACTGGGCCATCGGTCTGAGCGTGGCAGACCTGACTGAGAGCATCGTCAAGAACATGAGCCGTGTCCACCCTGTTTCCACCATGGTCAagGACATGTATGGTATTGGTGAGGAGGTCTTCCTGTCTCTGCCCTGCGTGCTGAACAGCAGCGGCGTGAGCAGCGTGGTCAACATGACCCTGACGGATGGCGAGGTGGGCCAGCTGAAGAGGAGCGCCGACACGCTCTGGGGCATCCAGAAGGACCTGAAGGACATCTGAACACACCCTGGCGCGCATAATACAACCCCATGATGCAGAGAGGCTTGtcgacacgcacacacactccttttAGAACGTCCCTCTCTCTTAGACTAACACTCTTATTTTGAAGGAGAATACCAGTGATTTTTAGAGTTTGTGCCAGGGAGAATTTCAGGTTTACACATATGTCATCCAGGCTGGTTTGTCATTAGGTCACCATCTACTTCCTGCAAATCACCTTCAAGTCTAAACTGGTAtgctccttttaaaaaaaaaacaaaaaaaaatacccaaATTGGCTACCCAACAGTTAGAAGGCTGAAGTTGCTGTGTTAGTGTTAAGAGATGTAAGCCAACCTGTGTACTTTCAACTGTTTGGACCAGGATCAAACCCAACCCTCAAAAATGGTCACTGTCTTCCTCCAGCACTTAGTGTACTGCGTTGTTCCTTTAGTTCCCTACAGGGACTCACTAAGAGAAAGACCCTTAACGTATAGAGAAAGACCCTTAAAGGACGCTGTTTTCCTCCCGCCTTCGTCTAAAAGTGGTACGCCCGCACACTTGGGTCAACACTGTGTGACCTTGTGAGTGTGAAGGTGGATTTTTCTTGCCCTCCTGTTTCCTCAGTGTTAGCAAAGGCAGATGGAGTAGCAGGAGAGGAATGGAAACGTCAGGTGTTACTGTCTGaccttgtgttgtgtgtaactTAATAAATTTGAACCTGATAAAGGgta

Function

symbol description
ldhb Enables L-lactate dehydrogenase activity and identical protein binding activity. Predicted to be involved in carbohydrate metabolic process and carboxylic acid metabolic process. Located in cytosol; membrane raft; and mitochondrial inner membrane.

NR:

description
PREDICTED: L-lactate dehydrogenase B chain isoform X2

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791027.1 True 1884 mRNA 0.53 8 27704795 27732941

Neighbor

gene id symbol gene type direction distance location
gys2 gys2,LOC101474059 coding downstream 12071 27650703 ~ 27692724 (-)
recql recql coding downstream 70221 27613376 ~ 27634574 (-)
caprin2 caprin2 coding downstream 104887 27560924 ~ 27599908 (-)
tmtc1 tmtc1 coding downstream 227893 27288852 ~ 27476902 (-)
LOC120553064 NA coding downstream 529746 27167430 ~ 27175049 (-)
slc25a3a slc25a3 coding upstream 29942 27762883 ~ 27779183 (-)
LOC120553860 NA coding upstream 31453 27764394 ~ 27764592 (-)
LOC120553859 NA coding upstream 40362 27773303 ~ 27773505 (-)
tmpoa tmpo coding upstream 65568 27798509 ~ 27848163 (-)
LOC120553236 strap coding upstream 115638 27848579 ~ 27862086 (-)
G230853 NA non-coding downstream 98989 27605459 ~ 27605806 (-)
G230826 NA non-coding downstream 150296 27553761 ~ 27554499 (-)
G230818 NA non-coding downstream 207230 27497191 ~ 27497565 (-)
G230815 NA non-coding downstream 224428 27480102 ~ 27480367 (-)
G230760 NA non-coding downstream 482371 27222225 ~ 27222424 (-)
G230920 NA non-coding upstream 28514 27761455 ~ 27761660 (-)
G230933 NA non-coding upstream 208091 27941032 ~ 27947477 (-)
G230946 NA non-coding upstream 241744 27974685 ~ 27976238 (-)
G230947 NA non-coding upstream 243569 27976510 ~ 27976727 (-)
G230965 NA non-coding upstream 291071 28024012 ~ 28024491 (-)
ipo8 ipo8 other downstream 154083 27502100 ~ 27550712 (-)
G230730 NA other downstream 586198 27117206 ~ 27118597 (-)
G230594 mrps33 other downstream 1323430 26375692 ~ 26381365 (-)
mkrn1 mkrn1 other downstream 1508285 26171320 ~ 26196510 (-)
LOC120553115 NA other downstream 2103415 25595578 ~ 25601380 (-)
LOC120553767 LOC104927640,LOC103363517 other upstream 608141 28341082 ~ 28430526 (-)
G231126 NA other upstream 1011662 28744603 ~ 28745246 (-)
G231136 NA other upstream 1059064 28792005 ~ 28792745 (-)
G231143 NA other upstream 1101325 28834266 ~ 28837740 (-)

Expression


Co-expression Network