golt1ba (golt1b,LOC101473753,LOC106532178,LOC103459552,LOC106907182,LOC105929813,LOC102297447)


Basic Information

Item Value
gene id golt1ba
gene name golt1b,LOC101473753,LOC106532178,LOC103459552,LOC106907182,LOC105929813,LOC102297447
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27637088 ~ 27644879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791028.1
TTCCGGAAGACGTGGCTGTTGCTCTGTTGCTGCAGTTAGCAGCTGTCATCCAAATTATTGTTAGAGAAGTACTTGAATGCTACTttaatattttctctttttctattttatctTCACCCGTTTATTCGGCGTCAAGATGATTTCGCTCACGGACTCCCAAAAGATTGGAATGGGATTAACAGGCTTCGGCgtgtttttcctcttcttcgGGATGATCCTGTTCTTTGACAAAGCACTCCTGGCTATTGGAAATATCCTGTTTGTTGCTGGACTTGCTTTTGTCATCGGGCTGGAAAGGACCTTCCGCTTCTTCTTCCAGAAGCACAAGATGAAGGCCACCAGTTTCTTCCTGGGAGGTGTGTTTGTGGTGCTGATTGGCTGGCCCATCGTCGGAGTCGTGCTGGAGTTCTACGGCTTTTTCCTCCTGTTTAGGGGTTTCTTCCCAGTTGTCGTGGGCTTTATCAGAAGAATACCAGTCCTCGGCTCCATCCTGAACCTGCCCTTCATCAGTGCAtatGTGGACAAAGTGGGCGAGAGCAACACCATGGTATAAAGGTGACTTTTTGTACCCAGACAAGGCTGTTTGAGGACAGCAGGTTTTTTAAAGCAACACGATCTCCCATCGGGCTGATTTAAAACAGCTAAGGTTATACATTCAGATTCCTCCCCCCCTCCAGCAGGCAAAGActgctttctgtctgtctgcaatTTCATTGGTCAGTGCTACCAATCAAAGGTTCATCAGAGTGAGCGTCGCACCACCAGTCTGTTACTAAAGGGTGGAGTTTCTAAGGTCACTACAATAAATATTCCAAATGCTATTGATCCTTCACCGTTGAGTGCATCTGGCATGAAAATGGACGGAGGATGGAAGACCCCCTCAAAGCTTTGACTCCGTCTGCGTGACTTTCTTACTCTGtggaacaaaaagacaaaaccacTGACCCTCCACAAGGATGAGAAGGGGATCGACAGCTTGCCATGTTGCCACATTTCTGTGCCTGTGCTTTGACTTCATTTGGACAAAAGCTTTTGTCATTTTGTCTCTTTGCAGATATTCTGTGACACTTTATTAATTTTTGTCCCGCAGCTGTTCAAATACAAAGCGTGGCGAGTATAATAATTTCCCTTTGTTACATGTCATTTCTGTTTTACGGTTGGCTAATGAGTACTTCtgtataaattattttttaaacgatcTGTGCTTTACTTCATGTATGGTGAGGTGCTATGGTatttgttactattgttattactactattattaAAGTCTGGTCCCACCAGAAA
>XM_039791029.1
TTTTCTAACGGATATGTCTCTGGATCAAATTGCCACGTTGAATGCAACACGGCGCTGTTCCGGAAGATGACATCGCTAGAAGATGATTTCGCTCACGGACTCCCAAAAGATTGGAATGGGATTAACAGGCTTCGGCgtgtttttcctcttcttcgGGATGATCCTGTTCTTTGACAAAGCACTCCTGGCTATTGGAAATATCCTGTTTGTTGCTGGACTTGCTTTTGTCATCGGGCTGGAAAGGACCTTCCGCTTCTTCTTCCAGAAGCACAAGATGAAGGCCACCAGTTTCTTCCTGGGAGGTGTGTTTGTGGTGCTGATTGGCTGGCCCATCGTCGGAGTCGTGCTGGAGTTCTACGGCTTTTTCCTCCTGTTTAGGGGTTTCTTCCCAGTTGTCGTGGGCTTTATCAGAAGAATACCAGTCCTCGGCTCCATCCTGAACCTGCCCTTCATCAGTGCAtatGTGGACAAAGTGGGCGAGAGCAACACCATGGTATAAAGGTGACTTTTTGTACCCAGACAAGGCTGTTTGAGGACAGCAGGTTTTTTAAAGCAACACGATCTCCCATCGGGCTGATTTAAAACAGCTAAGGTTATACATTCAGATTCCTCCCCCCCTCCAGCAGGCAAAGActgctttctgtctgtctgcaatTTCATTGGTCAGTGCTACCAATCAAAGGTTCATCAGAGTGAGCGTCGCACCACCAGTCTGTTACTAAAGGGTGGAGTTTCTAAGGTCACTACAATAAATATTCCAAATGCTATTGATCCTTCACCGTTGAGTGCATCTGGCATGAAAATGGACGGAGGATGGAAGACCCCCTCAAAGCTTTGACTCCGTCTGCGTGACTTTCTTACTCTGtggaacaaaaagacaaaaccacTGACCCTCCACAAGGATGAGAAGGGGATCGACAGCTTGCCATGTTGCCACATTTCTGTGCCTGTGCTTTGACTTCATTTGGACAAAAGCTTTTGTCATTTTGTCTCTTTGCAGATATTCTGTGACACTTTATTAATTTTTGTCCCGCAGCTGTTCAAATACAAAGCGTGGCGAGTATAATAATTTCCCTTTGTTACATGTCATTTCTGTTTTACGGTTGGCTAATGAGTACTTCtgtataaattattttttaaacgatcTGTGCTTTACTTCATGTATGGTGAGGTGCTATGGTatttgttactattgttattactactattattaAAGTCTGGTCCCACCAGAAA
>XM_039791030.1
GCGCTGTTCCGGAAGATGACATCGCTAGAAGAGATTGGAATGGGATTAACAGGCTTCGGCgtgtttttcctcttcttcgGGATGATCCTGTTCTTTGACAAAGCACTCCTGGCTATTGGAAATATCCTGTTTGTTGCTGGACTTGCTTTTGTCATCGGGCTGGAAAGGACCTTCCGCTTCTTCTTCCAGAAGCACAAGATGAAGGCCACCAGTTTCTTCCTGGGAGGTGTGTTTGTGGTGCTGATTGGCTGGCCCATCGTCGGAGTCGTGCTGGAGTTCTACGGCTTTTTCCTCCTGTTTAGGGGTTTCTTCCCAGTTGTCGTGGGCTTTATCAGAAGAATACCAGTCCTCGGCTCCATCCTGAACCTGCCCTTCATCAGTGCAtatGTGGACAAAGTGGGCGAGAGCAACACCATGGTATAAAGGTGACTTTTTGTACCCAGACAAGGCTGTTTGAGGACAGCAGGTTTTTTAAAGCAACACGATCTCCCATCGGGCTGATTTAAAACAGCTAAGGTTATACATTCAGATTCCTCCCCCCCTCCAGCAGGCAAAGActgctttctgtctgtctgcaatTTCATTGGTCAGTGCTACCAATCAAAGGTTCATCAGAGTGAGCGTCGCACCACCAGTCTGTTACTAAAGGGTGGAGTTTCTAAGGTCACTACAATAAATATTCCAAATGCTATTGATCCTTCACCGTTGAGTGCATCTGGCATGAAAATGGACGGAGGATGGAAGACCCCCTCAAAGCTTTGACTCCGTCTGCGTGACTTTCTTACTCTGtggaacaaaaagacaaaaccacTGACCCTCCACAAGGATGAGAAGGGGATCGACAGCTTGCCATGTTGCCACATTTCTGTGCCTGTGCTTTGACTTCATTTGGACAAAAGCTTTTGTCATTTTGTCTCTTTGCAGATATTCTGTGACACTTTATTAATTTTTGTCCCGCAGCTGTTCAAATACAAAGCGTGGCGAGTATAATAATTTCCCTTTGTTACATGTCATTTCTGTTTTACGGTTGGCTAATGAGTACTTCtgtataaattattttttaaacgatcTGTGCTTTACTTCATGTATGGTGAGGTGCTATGGTatttgttactattgttattactactattattaAAGTCTGGTCCCACCAGAAA
>XM_039791031.1
TTCCGGAAGACGTGGCTGTTGCTCTGTTGCTGCAGTTAGCAGCTGTCATCCAAATTATTGTTAGAGAAGTACTTGAATGCTACTttaatattttctctttttctattttatctTCACCCGTTTATTCGGCGTCAAGATGATTTCGCTCACGGACTCCCAAAAGATTGGAATGGGATTAACAGGCTTCGGCgtgtttttcctcttcttcgGGATGATCCTGTTCTTTGACAAAGCACTCCTGGCTATTGGAAATATCCTGTTTGTTGCTGGACTTGCTTTTGTCATCGGGCTGGAAAGGACCTTCCGCTTCTTCTTCCAGAAGCACAAGATGAAGGCCACCAGTTTCTTCCTGGGAGGTGTGTTTGTGGTGCTGATTGGCTGGCCCATCGTCGGAGTCGTGCTGGAGTTCTACGGCTTTTTCCTCCTGTTTAGGGGTTTCTTCCCAGTTGTCGTGGGCTTTATCAGAAGAATACCAGTCCTCGGCTCCATCCTGAACCTGCCCTTCATCAGTGCAccTTCGTAAGGCTCTGAGGACAAT

Function

symbol description
golt1b Involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Located in endoplasmic reticulum. Part of protein-containing complex.

NR:

description
PREDICTED: vesicle transport protein GOT1B

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791028.1 True 1287 mRNA 0.44 5 27637176 27644879
XM_039791029.1 False 1233 mRNA 0.45 6 27637088 27644879
XM_039791030.1 False 1157 mRNA 0.45 5 27637139 27644879
XM_039791031.1 False 538 mRNA 0.47 5 27637176 27642836

Neighbor

gene id symbol gene type direction distance location
LOC120553763 NA coding upstream 364873 27253416 ~ 27272215 (+)
LOC120553521 NA coding upstream 405697 27224262 ~ 27231391 (+)
gpr22a gpr22,LOC103362561,LOC104950263 coding upstream 490297 27138046 ~ 27146791 (+)
ndufa5 ndufa5 coding upstream 585806 27046066 ~ 27051282 (+)
aebp2 LOC103362558,LOC104950851 coding upstream 592671 27019362 ~ 27044417 (+)
spx spx coding downstream 3124 27648003 ~ 27651082 (+)
kiss2 NA coding downstream 50745 27695624 ~ 27696717 (+)
LOC120553234 LOC104948514,LOC103363512 coding downstream 204858 27849737 ~ 27959398 (+)
LOC120552999 NA coding downstream 371964 28016843 ~ 28023618 (+)
LOC120553593 LOC104927640,LOC103363517,LOC102305443 coding downstream 504853 28149732 ~ 28293546 (+)
G230858 recql non-coding upstream 6045 27628951 ~ 27631043 (+)
G230844 NA non-coding upstream 26085 27610407 ~ 27611003 (+)
G230843 NA non-coding upstream 29529 27607011 ~ 27607559 (+)
G230791 NA non-coding upstream 96842 27501846 ~ 27540246 (+)
G230790 NA non-coding upstream 139487 27497235 ~ 27497601 (+)
G230866 NA non-coding downstream 11141 27656020 ~ 27738199 (+)
LOC120552997 NA non-coding downstream 54184 27699063 ~ 27702637 (+)
G230878 NA non-coding downstream 114719 27759598 ~ 27760115 (+)
G230879 NA non-coding downstream 117997 27762876 ~ 27779078 (+)
G230881 NA non-coding downstream 134477 27779356 ~ 27800032 (+)
G230842 NA other upstream 33386 27603005 ~ 27603702 (+)
LOC120553194 NA other upstream 564536 27069077 ~ 27072552 (+)
LOC120553759 NA other upstream 665235 26693356 ~ 26971853 (+)
mrps33 mrps33,LOC106591474 other upstream 1255979 26372714 ~ 26381109 (+)
arhgef39 arhgef39 other upstream 1530265 26038188 ~ 26106823 (+)
G230904 NA other downstream 296442 27941321 ~ 27947473 (+)
G230975 NA other downstream 412852 28057731 ~ 28058218 (+)
trnat-ugu_41 NA other downstream 825927 28470806 ~ 28470878 (+)
trnak-uuu_24 NA other downstream 826227 28471106 ~ 28471178 (+)
LOC120553833 NA other downstream 856355 28501234 ~ 28501419 (+)

Expression


Co-expression Network