amdhd1 (amdhd1)


Basic Information

Item Value
gene id amdhd1
gene name amdhd1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7323070 ~ 7332259 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791041.1
CAAATATTTGCCTGTTCCCAAACTAGTTGAAAGCCAGTCACTCTGAAGAGAAGTGTTTCTGCTTTGGATGaatcaaaatgtccaaaaattaTAGACTCCTGGTGAAGAATGCCAAACAGGTGGTCCTGATCTGCAACAACGGAGAGAAGTTCATGACTAAACCAGGGATGCAAAATCTTTCTGTGATTGAAAATGGGAGCGTAGTGATAGGGAGTGATGGGCTCATTAAAGCCGTGGGGCCTGCAGAAATCATCAGAGCCCAGTATCCAGAAGCGTCCTTTGATAAAGTGATTGATGCTTCAGGAATGTGTGTCCTGCCTGGGTTGGTTGACGCCCACACCCATCCAGTCTGGGCTGGTGACAGGGTGCATGAATTTGCAATGAAGCTGGCAGGTGCCACCTACATGGACGTGCACCGGGCCGGTGGAGGGATCCACTTCACTGTGGAGCACACCCGAGCTGCCAGGTCCTCGGAGCTGCTGGCCTCCCTCAGCAGCAGGCTGGTCCGGATGCAGCGAGCAGGTACAACCCTGGTGGAGTGTAAGAGCGGGTACGGACTGGATCTGCAGACTGAGCTTAAGATGCTGGAGGTGATCGAGGAGGCCAGGCACACCCTGCCCATCAACATCTCCTCAACCTACTGTGGAGCCCACGCAGTGCCCAAAGGGAAGACAGTTGCAGAAGCAACAAAGGACATCCTGCAGGTTCAGCTGCCACGACTGAAGGAACAGATGTCTGCTGGGACTCTGAGGGTCGACAACATCGACGTGTTCTGTGAGCAGGGGGTGTTTGACCTCAGCTCTACTCGTTCCATCCTGCAGGCCGGCAAAGACATGGGCCTCAACATCAACTTCCACGGAGATGAGCTTCACCCCATGAACTCTGCTCAGTTGGGTGCAGAGCTCGGAGCCTTGGCCATCAGTCACCTGGAGGAGGTCACAGACGAGGGGATTGCTGCCATGGCAACAGCAAGAACCGCCGCTGTCCTTTTACCAACTACAGCTTACATCCTACGGCTGCCTCAGCCTCGGGCCAGAGATATGTTGGAAGCTGGAGTTGTTGTCGCCCTCGGCAGCGACTTTAACCCCAACGCCTACTGCTGCTCCATGCCAATAGTCATGCACCTGGCCTGTGTCAACATGAGGATGTCCATGCCTGAGGCTTTGGCTGCGGCCACCATCAACGCAGCCTACGCCCTGGGGCGCTCCCACACACATGGCTCCCTGGAGGTCAACAAACACGGAGACCTGCTGGTCCTCAACACCACGCGATGGGAACATCTTATCTACCAGCTGGGAGGACATCAGGAGTTGATCCGTTACGTCGTCATTAAAGGAAACATAGTCGTTGATAATGGCAAAACTATGGACTTATAATCAGAAAGAAATAGTGAAGGTGCTATCAATAATTGTGATAGACAGCTAGAATATATTAAGCtaatactttgacattttttgaaaCGTGTGTTTCTGGAAACGGGGAGACCAGTTGTAGCCTAGCTCTGTCCACTGTTTTTAGATAAATGTCATCTTAACTGTTGATTAAAATCTGCCTCTCTATTCATCTATCGCTGTTTCTGTAAATCAGTTATTCAGGgactacagcagcagcagaagaatTTTCATTATCACCTCAGAAAACAGGTAAAATATTTCGCACCTCAAGTGATCAAACAGGTTATTGATTGACATGATgtgaatagtatgtcgaaattcagtttaaaaaaagtcatagtatagtatgtcg
>XR_005638075.1
CAAATATTTGCCTGTTCCCAAACTAGTTGAAAGCCAGTCACTCTGAAGAGAAGTGTTTCTGCTTTGGATGaatcaaaatgtccaaaaattaTAGACTCCTGGTGAAGAATGCCAAACAGGTGGTCCTGATCTGCAACAACGGAGAGAAGTTCATGACTAAACCAGGGATGCAAAATCTTTCTGTGATTGAAAATGGGAGCGTAGTGATAGGGAGTGATGGGCTCATTAAAGCCGTGGGGCCTGCAGAAATCATCAGAGCCCAGTATCCAGAAGCGTCCTTTGATAAAGTGATTGATGCTTCAGGAATGTGTGTCCTGCCTGGGTTGGTTGACGCCCACACCCATCCAGTCTGGGCTGGTGACAGGGTGCATGAATTTGCAATGAAGCTGGCAGGTGCCACCTACATGGACGTGCACCGGGCCGGTGGAGGGATCCACTTCACTGTGGAGCACACCCGAGCTGCCAGGTCCTCGGAGCTGCTGGCCTCCCTCAGCAGCAGGCTGGTCCGGATGCAGCGAGCAGGTACAACCCTGGTGGAGTGTAAGAGCGGGTACGGACTGGATCTGCAGACTGAGCTTAAGATGCTGGAGGTGATCGAGGAGGCCAGGCACACCCTGCCCATCAACATCTCCTCAACCTACTGTGGAGCCCACGCAGTGCCCAAAGGGAAGACAGTTGCAGAAGCAACAAAGGACATCCTGCAGGTTCAGCTGCCACGACTGAAGGAACAGATGTCTGCTGGGACTCTGAGGGTCGACAACATCGACGTGTTCTGTGAGCAGGGGGTGTTTGACCTCAGCTCTACTCGTTCCATCCTGCAGGCCGGCAAAGACATGGGCCTCAACATCAACTTCCACGGAGATGAGCTTCACCCCATGAACTCTGCTCAGTTGGGTGCAGAGCTCGGAGCCTTGGCCATCAGTCACCTGGAGGAGGTCACAGACGAGGGGATTGCTGCCATGGCAACAGCAAGAACCGCCGCTGTCCTTTTACCAACTACAGCTTACATCCTACGGCTGCCTCAGCCTCGGGCCAGAGATATGTTGGAAGCTGGAGTTGTTGTCGCCCTCGGCAGCGACTTTAACCCCAACGCCTACTGCTGCTCCATGCCAATAGTCATGCACCTGGCCTGTGTCAACATGAGGATGTCCATGCCTGAGGCTTTGGCTGCGGCCACCATCAACGCAGCCTACGCCCTGGGGCGCTCCCACACACATGGCTCCCTGGAGGTCAACAAACACGGAGACCTGCTGGTCCTCAACACCACGCGATGGGAACATCTTATCTACCAGCTGGGAGGACATCAGGAGTTGATCCGTTACGTCGTCATTAAAGGAAACATAGTCGTTGATAATGGCAAAACTATGGACTTATAATCAGAAAGAAATAGTGAAGGTGCTATCAATAATTGTGATAGACAGCTAGAATATATTAAGCtaatactttgacattttttgaaaCGTGTGTTTCTGGAAACGGGGAGACCAGTTGTAGCCTAGCTCTGTCCACTGTTTTTAGATAAATGTCATCTTAACTGTTGATTAAAATCTGCCTCTCTATTCATCTATCGCTGTTTCTGTAAATCAGTTATTCAGGgactacagcagcagcagaagaatTTTCATTATCACCTCAGAAAACAGAACTGAATACTCTTCCCAGCgcacctgaggcagatctcatcaggagagatgctggaggaacACGGAACGCGCTCCAACACACCGGGagcattttgataatgaatggctgagacacaaggaggaaagaggagcggaTAGAGAGCGAAAAAGAAACGTTGGGGACGCTACAGGAGTGCAGAacggagcacagatagacggggcaggacagcggagccggagccggaggacagctgtggatgtttggcggaTCGGCGCGTTGGCTAGTACTGTACAACATTGCTGAAGAAGGTCCTCTCCTTCCCAAGGGTGTCAAAACAGTTGCCCGTTCAAATATCCCAAAATAGTGTCACACCATATGATTTTGATTTGTGTGACAAAATCTTTTTGATTAGAACTGACTCAAAACATGCTTGGACTTTGAAAAGAGTAGGCTCACAAATAGACATCTGtattatttttctgtatttttttgagaatttgtgcatttatttttcttagTTTTATTCAAGTTCTCACTTTGAGAAACAAGTGCCGGacagtcacagtcacaccaTATgagttttgttatgtttggttgaaaattctgaaaaaatgaGTGATGaactgttttaatgttgaa

Function

symbol description
amdhd1 Predicted to enable imidazolonepropionase activity. Predicted to be involved in histidine catabolic process. Predicted to act upstream of or within histidine catabolic process to glutamate and formamide. Predicted to be located in cytoplasm. Orthologous to human AMDHD1 (amidohydrolase domain containing 1).

NR:

description
probable imidazolonepropionase isoform X2

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K01468 hutI, AMDHD1; imidazolonepropionase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791041.1 False 1746 mRNA 0.50 9 7323070 7330021
XR_005638075.1 True 2262 transcript 0.49 10 7323070 7332259

Neighbor

gene id symbol gene type direction distance location
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding upstream 55620 7257270 ~ 7267450 (+)
vezt vezt coding upstream 67185 7240852 ~ 7255885 (+)
trnaw-cca_35 NA coding upstream 175730 7147269 ~ 7147340 (+)
lamb1b lamb1,LOC103364103 coding upstream 179065 7115962 ~ 7144005 (+)
dclre1c dclre1c,LOC106595997 coding upstream 223066 7089340 ~ 7100004 (+)
pah pah coding downstream 177705 7509964 ~ 7524419 (+)
LOC120553155 pah coding downstream 214169 7546428 ~ 7562205 (+)
LOC120553589 parpbp,LOC102779589 coding downstream 260620 7592879 ~ 7605838 (+)
LOC120553463 LOC103356656 coding downstream 537502 7869761 ~ 7887525 (+)
tnnt2c LOC102777397 coding downstream 563286 7895545 ~ 7897483 (+)
G226319 usp44 non-coding upstream 50754 7272077 ~ 7272316 (+)
G226318 NA non-coding upstream 51363 7271317 ~ 7271707 (+)
G226317 NA non-coding upstream 52317 7269104 ~ 7270753 (+)
G226316 NA non-coding upstream 54312 7267509 ~ 7268758 (+)
G226306 ndufa12 non-coding upstream 106684 7213392 ~ 7216386 (+)
G226352 NA non-coding downstream 2795 7335054 ~ 7346162 (+)
G226452 igf1 non-coding downstream 283929 7616188 ~ 7707570 (+)
LOC120553625 NA non-coding downstream 559150 7891409 ~ 7955485 (+)
G226505 NA non-coding downstream 692102 8024361 ~ 8028661 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding downstream 715520 8047779 ~ 8057617 (+)
snrpf snrpf,LOC106576293 other upstream 1881 7318517 ~ 7321189 (+)
prkcq prkcq,LOC102789446 other upstream 636431 6660520 ~ 6686639 (+)
abcc9 abcc9,LOC107387088 other upstream 1949433 5281258 ~ 5373637 (+)
G225894 NA other upstream 2665101 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 3384116 3935674 ~ 3938954 (+)
klhl42 klhl42 other downstream 31066 7363325 ~ 7368216 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 38183 7370442 ~ 7400399 (+)
ascl1a ascl1 other downstream 91359 7423618 ~ 7426254 (+)
LOC120553154 LOC104945813,LOC103356648 other downstream 193633 7525892 ~ 7532077 (+)
LOC120553156 LOC104945813 other downstream 234396 7566655 ~ 7569303 (+)

Expression


Co-expression Network