arl1 (arl1)


Basic Information

Item Value
gene id arl1
gene name arl1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19396856 ~ 19407358 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791046.1
TCGAAAGTTGCGAATCAAAATCGAAGCGAGAGTTGGTGATAGTTCAGCGACACGTCAACCACACGGAAGAAGGTGTCTGCCTCACCTGCCACTGTATTGCTGATTAACACCGTTGTCTTGTCGAAATGGGTGGTTTCTTCTCTAGTCTCTTCTCGGGCCTGTTCGGCACCAGGGAGATGAGGATTCTGATCCTGGGTTTGGACGGTGCAGGAAAAACCACTATTCTATACCGGCTGCAGGTTGGAGAGGTGGTCACCACAATCCCCACAATTGGCTTCAACGTCGAGACAGTCACATACAGAAATCTGAAGTTCCAGGTGTGGGATCTGGGAGGACAGACAAGTATCagGCCCTACTGGCGGTGTTACTACTCCAACACAGATGCGGTCATCTACGTGGTTGACAGCAGCGACCGCGACAGGATGGGCATCTCAAAGTCTGAGCTGGTGGCCATGTTGGAGGAGGAAGAGCTGAAGAAAGCTATCCTGGTGGTATTTGCAAACAAACAGGACATGGACCAGGCCATGACTCCCACTGAGGTGGCCAACTCTCTGGGCCTTCCCGCCCTCAAAGACAGAAAATGGCAGATCTTCAAGACCTCGGCCACAAAGGGCACAGGCCTGGATGAGGCAATGGAATGGCTGGTGGATTCCCTGAAGAGTCGGCAGTAAAGGCTCCCACCCATTCTGTATATACTCCTGACCTTTTGACCCCTCTGTATGAAGCCTTGTGACTGACCCATCTCCACGACCCACTGGACCAGTAATTGCACTCCTCCCCATCTCCAACCCAACGGAAGCCTTGGCCAAGCCCTCCCCAATGCCTTTCATGCCTGGGACTTAAAAGAGAAGGCTGCAGTAACATCTGGTTGCCTGAGGAAGTGAAGGTTTTAGAGAGCATGTATGACAGAGCGGTGGACAAGTTAGTAactacatttttgtgttttgtaaatGCAAACAAAGTGTTAAACGACGTGCTAAATGTTTCTAATTTTACAATTCCATTTGTTAAGCGTCGACACTAAAATAAGGCTCTGTGAAAATGCTGTCCACTCTAACATTTCTTCGCTGATCAATGCATGTTAGCTTTATCTTCTCTCAGAGGGGTTATGTAGTTTGCATGTAGTAAAGTCAGCAAGATGCAGTGAAGATCCACTGGGTGGCAGTGTTTCCCTtatatgcacacacagtatCACTGAGAAGCAGCTACCTGATTGCACGAAATGTTCAGATTCACTTTTGAAAATTCAGTCTTAATTAGTAGAAAAAAAACTACTATACCTCCTCTGGCCAAGTGTTACTGCAGCCTGGGCTGTTTTTGTACTATATAGTTAGGTAGATACAATGTCATGGATTTATATTGTTATTTCCCTCCTgttatttaaaagataatttagtAGTTGAAGCCTTTTTCCATCGAAACCCTCGAGTGCAGCTTTGGCATATTAGTCATTTAGTTACTGAACACTAACTGTATGCTCAAAGTTTTATGGTTGCATATTTATATCTGCTTGTACAGTGAAAATGATTCTCAGTAAAGATTGCTATCAATGATTGTA

Function

symbol description
arl1 Predicted to enable GTP binding activity; GTPase activity; and enzyme activator activity. Predicted to be involved in several processes, including activation of phospholipase D activity; protein localization to Golgi apparatus; and retrograde transport, endosome to Golgi. Predicted to be located in trans-Golgi network. Predicted to be active in Golgi apparatus. Is expressed in anterior axial hypoblast; axial chorda mesoderm; axis; notochord; and polster. Orthologous to human ARL1 (ADP ribosylation factor like GTPase 1).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 1

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0031584 activation of phospholipase D activity biological_process
GO:0007030 Golgi organization biological_process
GO:0009404 toxin metabolic process biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0034067 protein localization to Golgi apparatus biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
K07942 ARL1; ADP-ribosylation factor-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791046.1 True 1558 mRNA 0.46 6 19396856 19407358

Neighbor

gene id symbol gene type direction distance location
slc5a8 slc5a8 coding downstream 34746 19355872 ~ 19362110 (-)
dnai7 NA coding downstream 43365 19346318 ~ 19353491 (-)
bcat1 NA coding downstream 87172 19297922 ~ 19309684 (-)
LOC120553632 abcd2 coding downstream 665190 18711014 ~ 18731666 (-)
LOC120553351 NA coding downstream 691619 18667121 ~ 18705237 (-)
LOC120553005 NA coding upstream 10883 19418241 ~ 19428429 (-)
trnal-cag_18 NA coding upstream 31159 19438517 ~ 19438599 (-)
trnal-cag_19 NA coding upstream 35874 19443232 ~ 19443314 (-)
trnal-cag_20 NA coding upstream 39663 19447021 ~ 19447103 (-)
trnal-cag_21 NA coding upstream 40706 19448064 ~ 19448146 (-)
G228839 NA non-coding downstream 21061 19375459 ~ 19375795 (-)
G228838 NA non-coding downstream 21495 19374204 ~ 19375361 (-)
G228836 NA non-coding downstream 31328 19365124 ~ 19365528 (-)
G228835 NA non-coding downstream 32440 19364156 ~ 19364416 (-)
G228834 NA non-coding downstream 33475 19363172 ~ 19363381 (-)
G228855 NA non-coding upstream 6972 19414330 ~ 19414602 (-)
G228851 NA non-coding upstream 73463 19480821 ~ 19481084 (-)
G228869 LOC104924522 non-coding upstream 73866 19481224 ~ 19481477 (-)
G228870 NA non-coding upstream 74814 19482172 ~ 19482617 (-)
G228871 NA non-coding upstream 75509 19482867 ~ 19483153 (-)
sox5 sox5 other downstream 126520 19028609 ~ 19270336 (-)
LOC120553633 slc2a13,LOC103369283 other downstream 573766 18738396 ~ 18823090 (-)
gramd4a gramd4,LOC103376144 other downstream 975449 18363259 ~ 18421407 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other downstream 1295861 17830616 ~ 18100995 (-)
G228465 NA other downstream 2094658 17295122 ~ 17302198 (-)
G228934 fam19a2,LOC103364248 other upstream 325744 19733102 ~ 19807098 (-)
etv6 etv6 other upstream 399456 19806814 ~ 19839350 (-)
rerg rerg other upstream 659537 20066895 ~ 20122393 (-)
cdk17 LOC104930593 other upstream 893734 20301092 ~ 20354627 (-)
G229199 NA other upstream 1550299 20957657 ~ 20958220 (-)

Expression


Co-expression Network