cdpf1 (cdpf1)


Basic Information

Item Value
gene id cdpf1
gene name cdpf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17114008 ~ 17116453 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791082.1
AACGTTACCGAAGGATTAGTTTTCACTATGAAAATAAGCCATGTTTATAATTGTGGCTGCTTCACTTAACTACTTTCTATACAAATATATTTCCACATGCATTAGTTTGAAACGTCCTAATACTTCTGCATCCCCAGTCCAATAGGTGGCGCTAAAACTTCATGAAACAACATTGATGATTGGACTCGATATGAAAACCAGGAAGTAACTATTGTGCTCCTCTGctttgaaagatggagaaaaCTATGAGCGAGACCCGTCAAAAAACATTTACGTGCCAGTTGTGTGGTTTAAGCAGTCCCTTTACTTACGTCGGCCAGAAACCACCAAACACCAGAGCCATTGTGTTGCTTGAGGAGTGTTTTGTGACTCAGGACCCCTTTAGTCCGGACAAGGAAAAGTTCCTTGTTTTAGGCTCTACCTGCAGCGTGTGCAGCATGTGTGTCTGCGTTGGATCGGACTGCAGCCTTTTCTACACCAAGAGGTTTTGCATGCAGTGTGTGAGCAAGCACTTGGACCAGTTCCCCCGTCAAATCCAGGCTGAGCTGGCCAAGAAGAAGCAGAGCTCCAAGGCTGCCGTCTCGTGACATCTGACAAGAGGTCCATAGTATTCTCATCAATAGAAGAGAAATGTTTGATTGGTGATATAAAGCGTCCTAAATGTGCCAAGGTGCTTTACCGGCACTCTTTTATCCAAGTCCTACTGAACCAAACTCTATATGAAAAACTGGAACATCCTAGAAATGCCTTTTATTTAAGTGCAAAATGAACTCCACACATCAGTAAAGTACTAGGTTATGCTTAGTAAGGTTAGACTGTTGTATTAGCTTTCAGggtgttatttgtttttgtttccagaGAGTTTACTAGAAGCAAGCAACGGGTGTGACTAGTGTTGCTGGACCCTTGATGGATTGTGGTTACTGGCTACAGTGGTTTGCAGCAATTAAAAATGGCTCCCAATTAAAATTCTGAagtcatgtactgtatgtgcatagTTGCCCTGCAGTTGCTCTGAAttttaggttaaaaaaaacaaacttatcttatcacttatttttttaagattatttttggggcattttaggcatttattttgacaggacagctgaagacatgaaagagaagagagaggggagaatgacatgcagcaaaggcccGCAGGTctgagtcgaacccgggcctgctgcgttgaggagtaaacctctatatatgggcgcctgttCTGCCAACTGAGCTATACGGGCACCCCACTTATTTCTAATTCTTAAACCATGATGGTCAATTTTTGCCCATTGCTTGTTCAGCCCAATTCAGCAACTATTCTGGGCTTTTTACCAACTGTTTtaacattatcattattattattattattattattattattattattattattagtatgtaCGACTCAAAAGAAGATGTGGAGGTAATAGCGTTTCCCAAGACCAGTTGCTGGGCTGATTAAAAACCAGATTCATTTCTCCACTGCTCTTGCAATGTTAAGAAATTAATAAGTTACCTATAATGTATTCTTGCACTTGATAAATGATGCCTGTTGTACAGTGTTTTAATGacacccccccttttttttttttttataagaaaaCATGACTTTTCAGTAACAtatgttaatgtttacatttatgACTAATTATCTCTAACTATAGACACGTTATTGTTGACATGACCATCACTGTTAGCCAGCTTATCTCTGCGTCTATGGTCAGAGGGGGCACTGTTGACTTCTGTGGAGTCACAAAGTTTTTCTGTTATcttaaactattaaaaaac

Function

symbol description
cdpf1 Orthologous to human CDPF1 (cysteine rich DPF motif domain containing 1).

NR:

description
cysteine-rich DPF motif domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791082.1 True 1794 mRNA 0.40 3 17114008 17116453

Neighbor

gene id symbol gene type direction distance location
LOC120553682 NA coding downstream 1565 17109537 ~ 17112443 (-)
sapcd1 NA coding downstream 126453 16983903 ~ 16987555 (-)
prdm4 prdm4,LOC102777312 coding downstream 134973 16972532 ~ 16979035 (-)
tmem209 tmem209 coding downstream 141561 16965571 ~ 16972447 (-)
ahcyl2b ahcyl2,LOC103371314 coding downstream 149064 16917305 ~ 16964944 (-)
pparaa ppara coding upstream 300 17116753 ~ 17135130 (-)
atxn10 atxn10 coding upstream 80488 17196941 ~ 17207454 (-)
LOC120553673 NA coding upstream 92173 17208626 ~ 17220357 (-)
trim24 LOC103366983 coding upstream 105881 17222334 ~ 17234693 (-)
LOC120553454 LOC104933464,LOC108241015,LOC102202158 coding upstream 189770 17306223 ~ 17331378 (-)
G228363 NA non-coding downstream 107008 16952943 ~ 17007000 (-)
G228360 NA non-coding downstream 164202 16914607 ~ 16949806 (-)
G228295 NA non-coding downstream 282769 16824829 ~ 16831239 (-)
G228290 NA non-coding downstream 366968 16746743 ~ 16747040 (-)
G228283 NA non-coding downstream 577715 16536018 ~ 16536293 (-)
G228401 NA non-coding upstream 20817 17137270 ~ 17138275 (-)
G228423 NA non-coding upstream 104752 17221205 ~ 17222228 (-)
G228439 kdm5a non-coding upstream 127012 17243465 ~ 17243980 (-)
G228474 NA non-coding upstream 156495 17272948 ~ 17275477 (-)
LOC120552976 NA non-coding upstream 285795 17402248 ~ 17402832 (-)
slc37a3 slc37a3 other downstream 93273 17007724 ~ 17020735 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 290576 16748842 ~ 16823432 (-)
G228191 NA other downstream 1322155 15771238 ~ 15791853 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other downstream 2024025 15055475 ~ 15089983 (-)
grm8a grm8 other downstream 2060723 14634110 ~ 15053285 (-)
G228465 NA other upstream 178669 17295122 ~ 17302198 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other upstream 714163 17830616 ~ 18100995 (-)
gramd4a gramd4,LOC103376144 other upstream 1246806 18363259 ~ 18421407 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 1621943 18738396 ~ 18823090 (-)
sox5 sox5 other upstream 1912156 19028609 ~ 19270336 (-)

Expression


Co-expression Network