LOC120553034


Basic Information

Item Value
gene id LOC120553034
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 22920182 ~ 22942119 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791091.1
GATTTCGGAGGCAAAATCCGGGATATTTTCAGTTCAGAAGCGTAAATACCTCCAAAACAGTACTGGAGGAAGTGCTCACAGTGCTAAGCTGCAGCCATAGACGAAGACTATCATGAAGGCCAGAGCTTGTATAAGAAAGGAGTACAgcgtcctcttcctctgtctggCTGTGGTCGTTTTAATCCTTGTTCTACGCAACATGGAGACCTCCAGCCAGTTTCAGCATGAGGTGAACTCCACCATCATGGCCCCGAGAGTTTCCACTGACCCTGACGTGCATCAGGGCTTCTGCACCTTCCAGCCACTGTCCCCTGAGGACGCTCTGGAGGAACGCCTCCTACTGGACTCCATTGCTTGGCCTGAAACTCCACTATTGCCAACTCCTCTTATCCTGGAGCAGACCAGTGACCCAGCTCACAGCACCTTCACCATTCTcccagggagggggaggagacaGTGGCACGTAGGGGGGGATCAGCTGGAGGTTAGGATCAATATGTCTGATTTCCAGGGCCGTCCCAAGAAGTCTGGGGGAGACTTGTTACTCGCCCGGCTGCACAACCAGACGCTTGGTGCGGGTGTGGCTGGACAGGTGGTGGATCATCTGAATGGCAGCTACTCTGCTGTATTCTCTTTACTCTGGGAAGGAGACGCGCAGGTTGAGGTGATGCTGGCTCACCCTAGTGAGGCTATCACAGTACTGAAGAGGCTGAACAGTGAAGAACCTGACAGGATTGGCTTCAAGAGCCTCTTCCGCTCAGGCTCAATCTCTGAAACTACCAGCTGTAATGTCTGCCTACGTCCAACCCAGCAGCCGCTGTGCAACCACACTGACCTCCGTACAGGCGAGCCTTGGTTCTGTTACAAGCCGAAGAACCTGAGCTGTGATGCCAGGATCGACCACTCATTGggatacaacacacaaaacctCAGGCCCAACGAGGACAAACTCTTTCAAAgTGGTGTCAACTTGAAAGTGTACATACAGGCTTCAGGACCTGCCAGTGTCACAGTATCGCCAAAAAAGGAAGGTCAACCAGAGGTGGAGAGCAGCACTGTCAAGGTTGGACCCTCTGGCTATTACTACCAGGGTGTTTGGCAAGCACTAGGTGGCACCACAGTTCGCCAATTCAACGCAGCTGCTATCAGTCAGTGTCTGAAAGGCAAGGTGGTCCACATGCATGGGGACTCCACCGTCAGGCAGTTTTTTGAATTCCTCGATGCGACACTACCAGGTCTTAGGGTGTTTGACCTGCACGGTGTGGCGAACACTGGACCTTTCATAGCCTTGGACTATGCAAACAACATCTTGATGAAATTCCGCTTCCACGCTCCTCCTATCCATAGTGTGCATAGTATCTCAACCCGCGAGTTTCGTTACATTGCCAATGAAATTGATGAAATAATCGGAGGCACCAACATTGTTGTAGTTTTTGACATCTGGGCTCACTTTGGCACTTACCCGATGCAGATCTACATCCAGCGGCTGCAGAGCATCCACAGGGCGGTGGTGCGGCTGCTGGACAGGGCTCCAGGCACGCTGGTCGTCATCCGGACCGGGGCCCCCAGAGAGTTGACACTTTATTATGGGCTAATTAACAGCGACTGGCAGTCGCTGCAGTGTTATAAGGTGCTCAGAACCATGTTCAAAGGACTCAACGTTCATCTGATCGATGCCTGGGAGATGGTCCTTGCCCACCACCTGCCGCACAATATCCATCCACCACCTCCCATTATTGAGAATATGATTAACGTTCTCTTGTCCTACACGTGTCCTCAAATGGGCGgctagatgtgtgtgtgtgtgttggggagaGAAGTGGAGATTCAAGCACACGCTGAGTTTACATCTTATCTTTTGTTgcaattttctttattttgtatctACAAAACCTGGGAAATATAAGTAAAATCCAACTGGAATAATCATATGACGTGAGGAGTATTTTTCTTTAAAGTATGTATATAAAATGGTTGTTTGAAGTTGAACTTAATGTGAAGTGTACTTACTTTTAATTACACAATTACAgtgttttttgtaatgtaaCCGTCGGCTGCAGTAGTTTTAGGGGCAGGCTTACAGAAATAATGTGTAGTTTGAGTTGGCTTTGGTTTCATATCTACTTTAGTGATTTAGTTCAGTGAGTTAGTTCATTTTATGTTTGCACAGGGAATGACTGACAAGCAACTGTGTTGTTTCTAGGTGACTCGCAACACAGACAATGTAAATTTATGTCCAAAATGTTACTTATCCTCGcgatttttaagtgggtatatggaaattcTTGACCTTTCCTCATGGGTAAAaggtagagatgttccgatactgcctaaaacgctggtatcggtaagtactggagtttatgcaccaatccgataccacgtaataaagccctaaaggaAAGAAATCTACATTAAAAAGttgtttatttgttctttttccattatgactgtcaaactagataataaaaga

Function

GO: NA

KEGG:

id description
ko04310 Wnt signaling pathway
ko04390 Hippo signaling pathway
ko04550 Signaling pathways regulating pluripotency of stem cells
ko05200 Pathways in cancer
ko05226 Gastric cancer
ko05217 Basal cell carcinoma
ko05224 Breast cancer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791091.1 True 2473 mRNA 0.48 7 22920182 22942119

Neighbor

gene id symbol gene type direction distance location
LOC120553033 LOC103354931,LOC102080527,LOC102775588,LOC101467455 coding downstream 27001 22875923 ~ 22893181 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 346277 22534254 ~ 22573905 (-)
nav3 nav3 coding downstream 741075 21948736 ~ 22179107 (-)
LOC120553803 LOC103357126 coding downstream 974607 21937338 ~ 21945575 (-)
si:ch211-214j24.10 LOC103357125,LOC104922658 coding downstream 984786 21928239 ~ 21935396 (-)
LOC120553037 NA coding upstream 150700 23092819 ~ 23116421 (-)
LOC120553577 NA coding upstream 235067 23177186 ~ 23187762 (-)
cmah LOC101476433,LOC102306063,LOC100691852,LOC101466628,LOC102209249,LOC102786627,LOC103459632 coding upstream 286964 23229083 ~ 23275543 (-)
phax NA coding upstream 587638 23529757 ~ 23531807 (-)
dnajc2 dnajc2 coding upstream 620041 23562160 ~ 23588760 (-)
G229626 NA non-coding downstream 59771 22860118 ~ 22860411 (-)
G229624 NA non-coding downstream 73099 22846854 ~ 22847083 (-)
G229616 NA non-coding downstream 175083 22741374 ~ 22745099 (-)
G229610 NA non-coding downstream 241638 22677850 ~ 22678544 (-)
G229609 osbpl8 non-coding downstream 250914 22666693 ~ 22669268 (-)
G229748 NA non-coding upstream 104476 23046595 ~ 23120429 (-)
LOC120553038 NA non-coding upstream 142460 23084579 ~ 23085594 (-)
G229782 NA non-coding upstream 341410 23283529 ~ 23284051 (-)
G229784 NA non-coding upstream 343448 23285567 ~ 23286896 (-)
G229774 NA non-coding upstream 356590 23298709 ~ 23313086 (-)
LOC120553090 NA other downstream 1109085 21771088 ~ 21811097 (-)
slc38a2 slc38a2 other downstream 1445580 21461076 ~ 21474602 (-)
ptprz1b NA other downstream 1774649 21063691 ~ 21145533 (-)
G229199 NA other downstream 1961962 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 2565555 20301092 ~ 20354627 (-)
G229716 NA other upstream 162641 23104760 ~ 23239573 (-)
glipr1a NA other upstream 261649 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 748400 23690519 ~ 23711804 (-)
G229907 NA other upstream 757578 23699697 ~ 23700198 (-)
LOC120553046 NA other upstream 916100 23858219 ~ 23863974 (-)

Expression


Co-expression Network