LOC120553050


Basic Information

Item Value
gene id LOC120553050
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4093660 ~ 4107645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791110.1
gcggggcATGACCTCGCCATTCTAGGGTGGAAAATTGGTTGCGATAACTTCTCAAGTCCGTCATGGCGGCTGGACGAGGGGAGTTTTTTCGGAGTTTCCAGGAATCTTTCGAGTCTTTGGAGAAGAAACCCACCCAGCCGGCTCTGGGTAGACGACAGCCGGTTCGTGGAAGAGGAAAGCCGGGTCCGGGCGGGATACAATCGGGTCAAACGGGCggaaagagaaggaagagaagacCAAAGGCAGCACCAAGCTCGGTTAGCGGGAATAGTCTCAGCTTTCCACAACCGAGACCAAAGGAAAATAAAGCAAGTTCTCCCAAAATAAAAACTTCTCCATCCAAGGAAAACTTATTGGAGAGGCTCCCGTCTGAGATTCTGGTTAAGATTCTGTCGTACCTGGACCCCTCCTCGCTGTCCTGCATCAGCCACGTCAGCAAGCTCTTCTACCAGCTTGCCAACGATGATGCCGTGTGGCATAAGATTTACACGTCAGAGTTCGGGAGTCAAACGTGGAAGCCGAAGGCGTTGGCGGGTGACGCGGCGCAGAAGGTTGACCCGGTGGAGGGGGAGGTAGAGGATCGGTCGCCGGGCCGCTGGAAGAAGATGTACTTCAGGACCCTCGCTGGACAGGAAGTGAACAAGTGGAGGAGAGAGCTGAGATACGACAACAGCCCGTACACCGGCTTACCAAGGCAAACGGAGAGGGTCCTCAGaAACCTGAACGTGAGCTGGGAGCTGACGCTGTGTGATTATCGCGGGCGGGAGATCACGATGGAGCAGAGCCGAGCGTACTTCTTCGAGTCGTCCGTGGTCGTCCGCTGGAGTGGACCGAGCTTCCTCACATACCCTCAGATCAGCAGCATCCAGCTGTACGGAGTCCGGAAGGAGACCCTGAAGAGCCCCAAAGCCCGGAGGCCTGGCTGGCGCTCTCTGATCATAAAGCAGGACACCAGGGTTCCTGTTCGCTACATTGGCAAAGACAAACTAGTCAAGCTGAGGCATCTGCGGCCCTGCTTCCTCATAGGCACCTGGAGGGCTAACCACGGTATAGCCTTCATCATGGTCAGCCTGCACTTCCACAAGTTGGTGGAGAAGAGTCTCCTGGGATCTCCAGTCTGCCCGTTCTCGGAGCCTGTGGACCCCCCGCCCGCGGATAACTCGGACCCTGACTTTGGTCTGCACGGCTACACTCTGCACTTCGTCCTGCACAACACCGGCGCTGAGATCATGTCGGGACACTTCCGCGAGCTCTCCTGCCGCACAATTCAGATCCGGGCCGGACTGGTGGAGCTGAGGGTCATCAACCGGACCAACCTGTCCGAGCACAGACCGCTGTCTGGGAACATCAAGATGCCCTGGAAGAGCGAGGAACTGGAGGGCGTAGTGGAGAACTGCTGCATCGTATCGCTGACTCTGCTGGACGAGTTCCAGAAACCCTTCTGGTGCGTCAGCTCGCCCATTTGCATCATGATGGCCATGAAGCAGCAGTCCTTCGACTACAGCGGCGAGCACTTTGTGATGGATTTCAAAGACTCGGACGGTCAGGTGAAGATGAAACTGGTCTGGTTTAAGGAGCAGAAGCAGTTCTTCCTCATCAGCCTCACcgtctacatttctgtttggaaaatcaacaagcatTTCAGCCGAGCGTACTGAAGCAGAACTGGAGCGCTcgcaagttttggtttttaCAGTTCTGATGCAGTGACTTTGACGTTTTTGTTCAGTGTTACATCAGTTGTTTACAAAAATGTCCTACTTTTGTAGGCTTGTTTACGTATTTATCGTACAAAAATATTCTGTAAGAAGTGGGTAAAAGAGAATTAATTACAAGCTTATCCTGTTAAGGCTTCATGTTAAAAATTTTAAACTTCTAAAattctttatttgtattttgttcaCAATACAGGAAGTGTGTcactgtttttgtgtttctatTACACTTGTAGAATAAAAGTACAtgttatatgtaaatatatctgaGTAAATCCTAAGAAGAGGGttacattttaagtttgtttttaatttcagtATAAACTGAGTCATTTCAGTAAGTTATTTTGTTAGTTATGTTGTACAAAAGCAAGTCTCATTCTgtaaaaatggaaataaagaCAGGAGTTAATGCTGTTGAAGCTTCATGTGTTAGTCAGACAGTTGTCAgtagaaaaatacaaacaaatgtttggaagaaaagctAAAATGAGTTTGAGTTTTGTTCACAATACAGgaagtgtgtctctgtttttgtttctatTACACCTGAAGAATAAAGGTACATGTAATGTGTAAATATAAAGGATGAGATCCTGAAAAAGCACTTACGTTTATTTTGAATTTCCTTATTTACAGAGTACATATTCATTTCaagttattttagtttttgatCAGACATGGCAGAATTTCATGTTACTTACAAGCTGCTTTAAAAAGGGAaaactctttgttttttttctgctcagaaaataaatatttgtgtcacCAA
>XM_039791111.1
ggcggggcATGACCTCGCCATTCTAGGGTGGAAAATTGGTTGCGATAACTTCTCAAGTCCGTCATGGCGGCTGGACGAGGGGAGTTTTTTCGGAGTTTCCAGGAATCTTTCGAGTCTTTGGAGAAGAAACCCACCCAGCCGGCTCTGGGTAGACGACAGCCGGTTCGTGGAAGAGGAAAGCCGGGTCCGGGCGGGATACAATCGGGTCAAACGGGCggaaagagaaggaagagaagacCAAAGGCAGCACCAAGCTCGGTTAGCGGGAATAGTCTCAGCTTTCCACAACCGAGACCAAAGGAAAATAAAGCAAGTTCTCCCAAAATAAAAACTTCTCCATCCAAGGAAAACTTATTGGAGAGGCTCCCGTCTGAGATTCTGGTTAAGATTCTGTCGTACCTGGACCCCTCCTCGCTGTCCTGCATCAGCCACGTCAGCAAGCTCTTCTACCAGCTTGCCAACGATGAaAACCTGAACGTGAGCTGGGAGCTGACGCTGTGTGATTATCGCGGGCGGGAGATCACGATGGAGCAGAGCCGAGCGTACTTCTTCGAGTCGTCCGTGGTCGTCCGCTGGAGTGGACCGAGCTTCCTCACATACCCTCAGATCAGCAGCATCCAGCTGTACGGAGTCCGGAAGGAGACCCTGAAGAGCCCCAAAGCCCGGAGGCCTGGCTGGCGCTCTCTGATCATAAAGCAGGACACCAGGGTTCCTGTTCGCTACATTGGCAAAGACAAACTAGTCAAGCTGAGGCATCTGCGGCCCTGCTTCCTCATAGGCACCTGGAGGGCTAACCACGGTATAGCCTTCATCATGGTCAGCCTGCACTTCCACAAGTTGGTGGAGAAGAGTCTCCTGGGATCTCCAGTCTGCCCGTTCTCGGAGCCTGTGGACCCCCCGCCCGCGGATAACTCGGACCCTGACTTTGGTCTGCACGGCTACACTCTGCACTTCGTCCTGCACAACACCGGCGCTGAGATCATGTCGGGACACTTCCGCGAGCTCTCCTGCCGCACAATTCAGATCCGGGCCGGACTGGTGGAGCTGAGGGTCATCAACCGGACCAACCTGTCCGAGCACAGACCGCTGTCTGGGAACATCAAGATGCCCTGGAAGAGCGAGGAACTGGAGGGCGTAGTGGAGAACTGCTGCATCGTATCGCTGACTCTGCTGGACGAGTTCCAGAAACCCTTCTGGTGCGTCAGCTCGCCCATTTGCATCATGATGGCCATGAAGCAGCAGTCCTTCGACTACAGCGGCGAGCACTTTGTGATGGATTTCAAAGACTCGGACGGTCAGGTGAAGATGAAACTGGTCTGGTTTAAGGAGCAGAAGCAGTTCTTCCTCATCAGCCTCACcgtctacatttctgtttggaaaatcaacaagcatTTCAGCCGAGCGTACTGAAGCAGAACTGGAGCGCTcgcaagttttggtttttaCAGTTCTGATGCAGTGACTTTGACGTTTTTGTTCAGTGTTACATCAGTTGTTTACAAAAATGTCCTACTTTTGTAGGCTTGTTTACGTATTTATCGTACAAAAATATTCTGTAAGAAGTGGGTAAAAGAGAATTAATTACAAGCTTATCCTGTTAAGGCTTCATGTTAAAAATTTTAAACTTCTAAAattctttatttgtattttgttcaCAATACAGGAAGTGTGTcactgtttttgtgtttctatTACACTTGTAGAATAAAAGTACAtgttatatgtaaatatatctgaGTAAATCCTAAGAAGAGGGttacattttaagtttgtttttaatttcagtATAAACTGAGTCATTTCAGTAAGTTATTTTGTTAGTTATGTTGTACAAAAGCAAGTCTCATTCTgtaaaaatggaaataaagaCAGGAGTTAATGCTGTTGAAGCTTCATGTGTTAGTCAGACAGTTGTCAgtagaaaaatacaaacaaatgtttggaagaaaagctAAAATGAGTTTGAGTTTTGTTCACAATACAGgaagtgtgtctctgtttttgtttctatTACACCTGAAGAATAAAGGTACATGTAATGTGTAAATATAAAGGATGAGATCCTGAAAAAGCACTTACGTTTATTTTGAATTTCCTTATTTACAGAGTACATATTCATTTCaagttattttagtttttgatCAGACATGGCAGAATTTCATGTTACTTACAAGCTGCTTTAAAAAGGGAaaactctttgttttttttctgctcagaaaataaatatttgtgtcacCAA
>XM_039791112.1
gcggggcATGACCTCGCCATTCTAGGGTGGAAAATTGGTTGCGATAACTTCTCAAGTCCGTCATGGCGGCTGGACGAGGGGAGTTTTTTCGGAGTTTCCAGGAATCTTTCGAGTCTTTGGAGAAGAAACCCACCCAGCCGGCTCTGGGTAGACGACAGCCGGTTCGTGGAAGAGGAAAGCCGGGTCCGGGCGGGATACAATCGGGTCAAACGGGCggaaagagaaggaagagaagacCAAAGGCAGCACCAAGCTCGGTTAGCGGGAATAGTCTCAGCTTTCCACAACCGAGACCAAAGGAAAATAAAGCAAGTTCTCCCAAAATAAAAACTTCTCCATCCAAGGAAAACTTATTGGAGAGGCTCCCGTCTGAGATTCTGGTTAAGATTCTGTCGTACCTGGACCCCTCCTCGCTGTCCTGCATCAGCCACGTCAGCAAGCTCTTCTACCAGCTTGCCAACGATGATGCCGTGTGGCATAAGATTTACACGTCAGAGTTCGGGAGTCAAACGTGGAAGCCGAAGGCGTTGGCGGGTGACGCGGCGCAGAAGGTTGACCCGGTGGAGGGGGAGGTAGAGGATCGGTCGCCGGGCCGCTGGAAGAAGATGTACTTCAGGACCCTCGCTGGACAGGAAGTGAACAAGTGGAGGAGAGAGCTGAGATACGACAACAGCCCGTACACCGGCTTACCAAGGCAAACGGAGAGGGTCCTCAGaAACCTGAACGTGAGCTGGGAGCTGACGCTGTGTGATTATCGCGGGCGGGAGATCACGATGGAGCAGAGCCGAGCGTACTTCTTCGAGTCGTCCGTGGTCGTCCGCTGGAGTGGACCGAGCTTCCTCACATACCCTCAGATCAGCAGCATCCAGCTGTACGGAGTCCGGAAGGAGACCCTGAAGAGCCCCAAAGCCCGGAGGCCTGGCTGGCGCTCTCTGATCATAAAGCAGGACACCAGGGTTCCTGTTCGCTACATTGGCAAAGACAAACTAGTCAAGCTGAGGCATCTGCGGCCCTGCTTCCTCATAGGCACCTGGAGGGCTAACCACGGTATAGCCTTCATCATGGTCAGCCTGCACTTCCACAAGTTGGTGGAGAAGAGTCTCCTGGGATCTCCAGTCTGCCCGTTCTCGGAGCCTGTGGACCCCCCGCCCGCGGATAACTCGGACCCTGACTTTGGTCTGCACGGCTACACTCTGCACTTCGTCCTGCACAACACCGGCGCTGAGATCATGTCGGGACACTTCCGCGAGCTCTCCTGCCGCACAATTCAGATCCGGGCCGGACTGGTGGAGCTGAGGGTCATCAACCGGACCAACCTGTCCGAGCACAGACCGCTGTCTGGGAACATCAAGATGCCCTGGAAGAGCGAGGAACTGGAGGGCGTAGTGGAGcTCTGATGGTTGTTTCTTGCGCTGCGTAGAACTGCTGCATCGTATCGCTGACTCTGCTGGACGAGTTCCA

Function

GO: NA

KEGG:

id description
K10298 FBXO15; F-box protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791110.1 True 2487 mRNA 0.47 10 4093661 4107645
XM_039791111.1 False 2239 mRNA 0.46 9 4093660 4107645
XM_039791112.1 False 1461 mRNA 0.57 10 4093661 4106590

Neighbor

gene id symbol gene type direction distance location
LOC120553047 NA coding upstream 74618 3998734 ~ 4019042 (+)
il22 NA coding upstream 205480 3882173 ~ 3888180 (+)
mdm1 NA coding upstream 220341 3841996 ~ 3873319 (+)
cand1 cand1 coding upstream 293065 3736482 ~ 3800595 (+)
LOC120553119 LOC104957567 coding upstream 526067 3546739 ~ 3567593 (+)
LOC120553052 NA coding downstream 47650 4155295 ~ 4175824 (+)
trnal-caa_13 NA coding downstream 78916 4186561 ~ 4186671 (+)
trnal-caa_14 NA coding downstream 80524 4188169 ~ 4188279 (+)
trnal-caa_15 NA coding downstream 80973 4188618 ~ 4188728 (+)
trnal-caa_16 NA coding downstream 82584 4190229 ~ 4190339 (+)
G225721 NA non-coding upstream 42537 3996965 ~ 4051123 (+)
G225725 NA non-coding upstream 51934 4041405 ~ 4041726 (+)
G225707 NA non-coding upstream 151233 3885713 ~ 3942427 (+)
G225708 NA non-coding upstream 166695 3886624 ~ 3926965 (+)
G225607 NA non-coding upstream 261130 3831438 ~ 3832530 (+)
G225785 NA non-coding downstream 30883 4138528 ~ 4140277 (+)
G225790 NA non-coding downstream 56784 4164429 ~ 4165021 (+)
G225804 NA non-coding downstream 104433 4212078 ~ 4212312 (+)
G225805 NA non-coding downstream 163148 4270793 ~ 4271236 (+)
G225807 NA non-coding downstream 201462 4309107 ~ 4309388 (+)
LOC120553793 NA other upstream 154706 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 252486 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 558988 3534600 ~ 3534672 (+)
trnat-ugu_39 NA other upstream 559999 3533589 ~ 3533661 (+)
trnat-ugu_38 NA other upstream 561580 3532008 ~ 3532080 (+)
G225894 NA other downstream 549799 4657444 ~ 4657969 (+)
abcc9 abcc9,LOC107387088 other downstream 1173613 5281258 ~ 5373637 (+)
prkcq prkcq,LOC102789446 other downstream 2552875 6660520 ~ 6686639 (+)
snrpf snrpf,LOC106576293 other downstream 3210872 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 3215425 7323070 ~ 7332259 (+)

Expression


Co-expression Network