LOC120553052


Basic Information

Item Value
gene id LOC120553052
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4155295 ~ 4175824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791116.1
AGAGAGGAGGGGTGAGCCTGGGAGCGATACACTTTCTGTTGTTAACGCACTTATTTCGACTCACATTTAGTAACTGCAGGGctagttgtattttacgtgCGGAGGAATAAATCATTACAATACAACCTGGAGCGCGTCACGGTGTGATTACGCATCTCTCAGTGTTTGGTGTCTCgcggcagcactttgttggactgcGAAGAAGATCAGGTgtaggaaaggaaaggaggggcacagggaaggaaaggaggaagtGAGAGGAAACCGGTAAAGCAGGGTAGGTCTGTGTAGTAGCCCGAGGGAGTCTCTCTGCCCACTCTGTAGGAAACTTGTCTCTGTTGAAGCGAGTCGTGAGCCAGAAGCTGCTGAGAACGAAGGAATTAAGGACAACCAAAAGCCATGGCTGTGAATAAATGCATCAAAtacctcctcttcttcttcaacCTTCTTTTCTGGcTTAGTGGATGCCTCATCCTGGGCGTGTCCATCTACCTGAAAGTCGGCAAGGCTGGAAATCAGATCACCAGTAACTCTCTCCCCGGCGTGGACCTGCTGATCGCCATCGGCGTGATCATCATGGTGCTGGGCTTCCTGGGCTGCTGCGGAGCCATCCGAGAGAACCGCTgcttgctgctgctgTTCTTCATCAGCCTTctcatcatcttcatcctcctggtGGTGGCGGGCATCCTGGGAGCCGTGGGGGAGAACAAGGTGAATGACTGGGCGAAAGAGAATCTGGATAAACTCACCCCACTGTCATCACAACAGGCTAGTGTGCAGAACGACATGCAGGAACTGCAGCAGGAGTTGCAATGTTGTGGTCTGCTGAACGGAGCATCCGACTGGGGTGTAGGTCCTGCCCCCTGCAACTGCAACGCCACTTTAACTGCAAGTGTCTGCAAGTCCACCCCCATCTTCACCACGCCCTGCGGCACCAAACTCATCAGTTTGATACAGAGCAACTTGACTGTGGTGCTGGGCATCGCCTTTGGAATCGCCCTCCTGCTGATTTTCGGCATGGTCTTCTCCATGATTCTCTACTGTCAGATTGGCAGAAAGGATGGCGCCACTTCCACtgcctgaacacccacacatgGCCACGCCCACTCGCTGCCTGGCAACAGCCAATTAGCAGAGTGCAAATGACCCATTTAACACATAACCTCAGTGCTAATGTATCTTAACCTGTGCTTTTACTGTGGAGGAACACGCTGATATTTTGGTTGAAATATCATGATGTTAATAGAGTTAATACACATGTGGTGTGTACTGTATGGAGTCTCAATCGTGACAAAAGTTCAATATATAAATATCTTGAGCAAACATGAGAATTTCTGCTTCTTGAAGGTGTTAAATTAACCAATAAGATATTGGGGGAGTAAAATAAATGGGGTTTAAaattaacttaaaaaataaaaaagtttggtTCTTTTAAACAAATGTGTTTCTACCCGAAATATCAGTGTGTTCCTTTAACCTTACAGCAAACCTGTGATAAttatcacttctttttttcttttttaccaaacaaacaaatccaAACATTAGTCTTTCTTTCCGTTCACAATGTGGCCTCAAAGAACAAAATCTATAAACATTGTCaaaacaatttgtgttgtctggGGCTTATTTCGATGGAAGCCAATTACCCccaaaatcaaatcaataaaTACACTGTTAggtatggttaaaaaaaatgtcattagtATCTGTATGATTTATACATAAGTCAATATTATGACATCTTCTCATAATTATGATACATTCTCTAAAAATGTTACTTACATATTCGTAAATCTAAAATTACATAAGTTTTTTTCTCGAACATTGTGTTaatatagttgtttttttgctcttttctaTATGTAAACTGTCAACTTTTTTTGAAAAGTCCTGAATCATAGTTTTCTTACGATTTCTGCCATGCCTTATTTTGTATTTGATATTTAATTTGTATCGTATGAAGGAATGGGCTTCCATAGCTTTATGTCCAAAAATATACTGCCATAGCTGTCTGTCACAACATCTGCTGCCATTTCTGATAAATGTTCCAAAATAATCCTTATGAAGTTAAAGTTGTGGTGTGTTCCTGTGTTGTTCCGTTTATAACTCCATAAACCTTTtagaaatacaagaaataattaaataatattgCCATTATAAAGCCTTAACTTCCATATATATATTCAACCACATTGTTATATTACTGTTTAACTTATAATCGTGTTATAAAAGTGAAAGTGGTTTAATACTGTGGAACAGACTTCACCTGTTCACTCGGAATCTCATTGCTGTTGTCTTTGTCATTTTTACGGCACTGTCTGAAAACTGTaaggatgtttttatttttgtttttgtccctgAGCTGAGTTTAGTTTGAGGACAACATCAAGTGTCATACTATCCTGCTTGAAGAAGGGAAATAAAAACTACTGAATTAAAATAACA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17349 TSPAN8; tetraspanin-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791116.1 True 2451 mRNA 0.41 8 4155295 4175824

Neighbor

gene id symbol gene type direction distance location
LOC120553050 NA coding upstream 47650 4093660 ~ 4107645 (+)
LOC120553047 NA coding upstream 136253 3998734 ~ 4019042 (+)
il22 NA coding upstream 267115 3882173 ~ 3888180 (+)
mdm1 NA coding upstream 281976 3841996 ~ 3873319 (+)
cand1 cand1 coding upstream 354700 3736482 ~ 3800595 (+)
trnal-caa_13 NA coding downstream 10737 4186561 ~ 4186671 (+)
trnal-caa_14 NA coding downstream 12345 4188169 ~ 4188279 (+)
trnal-caa_15 NA coding downstream 12794 4188618 ~ 4188728 (+)
trnal-caa_16 NA coding downstream 14405 4190229 ~ 4190339 (+)
trnal-caa_17 NA coding downstream 14852 4190676 ~ 4190786 (+)
G225785 NA non-coding upstream 15018 4138528 ~ 4140277 (+)
G225721 NA non-coding upstream 104172 3996965 ~ 4051123 (+)
G225725 NA non-coding upstream 113569 4041405 ~ 4041726 (+)
G225707 NA non-coding upstream 212868 3885713 ~ 3942427 (+)
G225708 NA non-coding upstream 228330 3886624 ~ 3926965 (+)
G225804 NA non-coding downstream 36254 4212078 ~ 4212312 (+)
G225805 NA non-coding downstream 94969 4270793 ~ 4271236 (+)
G225807 NA non-coding downstream 133283 4309107 ~ 4309388 (+)
G225802 NA non-coding downstream 274236 4450060 ~ 4453432 (+)
G225842 NA non-coding downstream 297787 4473611 ~ 4475127 (+)
LOC120553793 NA other upstream 216341 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 314121 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 620623 3534600 ~ 3534672 (+)
trnat-ugu_39 NA other upstream 621634 3533589 ~ 3533661 (+)
trnat-ugu_38 NA other upstream 623215 3532008 ~ 3532080 (+)
G225894 NA other downstream 481620 4657444 ~ 4657969 (+)
abcc9 abcc9,LOC107387088 other downstream 1105434 5281258 ~ 5373637 (+)
prkcq prkcq,LOC102789446 other downstream 2484696 6660520 ~ 6686639 (+)
snrpf snrpf,LOC106576293 other downstream 3142693 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 3147246 7323070 ~ 7332259 (+)

Expression


Co-expression Network