si:dkey-117n7.5 (LOC103382769,LOC107385417)


Basic Information

Item Value
gene id si:dkey-117n7.5
gene name LOC103382769,LOC107385417
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 12333944 ~ 12349260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791120.1
AAAAAGGCACTCTAGGTATTAAAGGAGCTCCTGGGCATTTAGGTCTAAAAGGCTTGCCTGGCAGCAGAGGTGAAAAGggtgAACGTGGGTTAGCTGGAGTCAGGGGCGAAAGGGGGAGTGTGCTTCAAATCCAAGGACCCCGTGGATCTAAGGGTTCCAAAGGAGAAGCGGGTGAGCGAGGCCCACCAGGTTTTGATGGTGACAAAGGAGAAAAGGGCGAGGACGGTCCTCCTGGAGTCAAGgGCATAAAGGGTGACGCAGGCACTAAGGGGGCATTAGGGCGTTTTGGAGCACGAGGACCAGTAGGCCAGAAGGGAGATCCAGGAGAGCCGGGACTCAATGGAGTAATGGGTCGCAATGGGGATCATGGAGGGGACGGGGCCAAGGGGGACAAAGGAGACATGGGACTGCTGGGCCAGAAGGGCAATCAGGGTGATCCAGGAGAACCAGGCTTACCAGGAGACAGAGGGGAGAAGGGGGAGAAGGGTTTCAGAGGTTTACCTGGACGTATTGGGAGTCCAGGCCTGGATGGAGAAAAGGGCGATATGGGGTTTCACGGCACCCCTGGTATACCTGGGCTGAACGGACTCACAGGGCGCAAGGGAGATAAGGGACAGGGAGGCACCAATGGTGTTGATGGTGATCCAGGAGTGAAAGGACACAAGGGTGCTGCAGGTTTCCCAGGTTTCCCAGGTTTTAAGGGGTCAGCAGGGAATCCAGGAATGGATGGAGATCAGGGACCACCAGCACCCCCAGGACCCCGTGGGGACACAGGGCCTAAGGGGGACAGGGGCAGAAGGGGCAAAACCAAACCATGTCAGAGGGGAGCACCCGGGGCTCCAGGACTAAgaggagagagtGGTACACTGGGTATTGAAGGAGGAAAAGGGGAGAAGGGGGAGCCTGGACTCTCAGCTGAAGAAGTGAAGGAGCTAGTCACCCTGGAGGTGGTAGAAAAGTGTGGGTTGGAATACAAGTTCATGGTAAAGTCTGTGGATCCAGATGGAACAACTGCAGTGACTGAGAGTAAAAATGAGCCAGATGATGTGGTGATATCCCTCCACCATCACCTCCATAAAGAAGAGAtggaagaagaaggtgaagaagTGGAAGAATATGGAGACAAGCTGGGAGAAATTACCAGTCCTGCCCCTGTGATCCGACCAAACCGCACTgATTCTCTTGAGTCAGGACATAGGAAGAAAAGAAGCGTATTTGGAACAAACACTGCTGTTTCAGCAGCAGACCGCTGCCTGGAGCCGATGTCAGAGGGGGCTTGTTCAGAATATGTTCTGCTCTGGTACTTCCACCCTCGCTCAGGGGAATGCAGGCCATTTGTGTATGGGGGCTGTGGTGGCAACAGAAACAGATTCCCCACAAGACATGAGTGCCAGAGTTGGTgtgagaaggagaggagagGTACCGAGGCCTGGAGATGAAACTAGCAACCCCATACAAGAAAATAACTTTTGTACATAACTGTGTAAAATGTCATAactttgtattttatattggatttatttatacattttaacagtggtttcattattgttttgttttatggaCAAAGTGTTGAAAGTCAAAAtgtgaatttatttttaatgtttttgaaatgtcaAAAGTGATCAATATTCACACTACTGAAAAATTAAATCTGTcttctttttgtgtgtctgttgtgctCGTCTCGTGTCTCTCCTCTCGAGTCTCTCCTCTCGAGTCTCTTTATGTAACGCTCAGTCCCCTTTCTTATGTTTTGTCAGTTGCCCTGCATTCTGTGCAGTGAGAGAAATAAGAAGCCGGTAGCTGATT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(VII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791120.1 True 1812 mRNA 0.50 20 12333944 12349260

Neighbor

gene id symbol gene type direction distance location
ucn3l LOC103371858,LOC106936223,LOC103146475,LOC103460978 coding downstream 3945 12327666 ~ 12329999 (-)
copg2 copg2 coding downstream 8174 12316147 ~ 12325770 (-)
LOC120553762 LOC103374597,LOC102209562,LOC104923710,LOC101480655,LOC100694855 coding downstream 235639 12093538 ~ 12098305 (-)
iqsec3a iqsec3,LOC102789444,LOC102305902 coding downstream 250154 11981998 ~ 12083790 (-)
LOC120553245 parp11,LOC103365400,LOC100707536,LOC107085973,LOC102790985,LOC101482593,LOC104955166 coding downstream 390705 11936414 ~ 11943239 (-)
col7a1l LOC103371861,LOC108235101,LOC106515058 coding upstream 4384 12353644 ~ 12412870 (-)
lrguk NA coding upstream 66554 12415814 ~ 12433137 (-)
exoc4 exoc4 coding upstream 84636 12433896 ~ 12554663 (-)
zc3hc1 zc3hc1 coding upstream 718153 13067413 ~ 13075321 (-)
cax1 LOC103382807 coding upstream 733980 13083240 ~ 13094167 (-)
G227407 NA non-coding downstream 364466 11966652 ~ 11969478 (-)
LOC120553250 NA non-coding downstream 384743 11944330 ~ 11949201 (-)
LOC120553249 NA non-coding downstream 427124 11895643 ~ 11906820 (-)
G227384 NA non-coding downstream 502267 11831029 ~ 11831677 (-)
G227314 NA non-coding downstream 511240 11812483 ~ 11822704 (-)
G227488 NA non-coding upstream 290174 12639434 ~ 12639775 (-)
LOC120553123 NA non-coding upstream 551054 12900314 ~ 13004473 (-)
G227627 cpsf6 non-coding upstream 1058576 13407836 ~ 13454828 (-)
G227629 cacna2d4a,cacna2d4 non-coding upstream 1090732 13439992 ~ 13441507 (-)
G227636 NA non-coding upstream 1114850 13464110 ~ 13472016 (-)
G227429 LOC104958361,LOC103370548 other downstream 45790 12284926 ~ 12288154 (-)
cracr2ab LOC102301749,LOC103365394 other downstream 485003 11837248 ~ 11848941 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other downstream 657112 11617355 ~ 11676832 (-)
hgfa LOC103365344,LOC104958230 other downstream 851366 11458581 ~ 11482578 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other downstream 1352685 10980198 ~ 10981259 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other upstream 688891 13038151 ~ 13066528 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other upstream 776908 13126168 ~ 13344461 (-)
LOC120553407 napepld,LOC106940535 other upstream 1136626 13485886 ~ 13508247 (-)
LOC120553470 wnk1 other upstream 1167247 13516507 ~ 13617756 (-)
LOC120553486 NA other upstream 1294323 13643583 ~ 13659272 (-)

Expression


Co-expression Network