alg12 (alg12)


Basic Information

Item Value
gene id alg12
gene name alg12
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17570902 ~ 17576427 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791143.1
AGTTAtacgcatcacacacacacacacatctttcaGCTGTCATGGCTGAAAAGAGGAATGCATCAGGGCTGCCACTGCTCTCTTTATTAATAACTGTGGCTCttttgcatttattcatttgtcCGTTTACTAAAGTTGAGGAGAGCTTTAATTTACAAGCGACGCACGACATTCTGTATCACAGGCTTAACTTTGACAAGTATGACCATCACGAGTTCCCCGGTGTGGTGCCACGGACTTTCCTTGGCCCTCTGTTTCTCTCCATCCTCTGCTCCCCCGTTGtgtttctgtcctctctgctgGATGCACCCAAATTCTACACACTGCTGACGGTCCGAGCTTCCCTGGGAGTGTGCGTTGTCGGTGCACTGTGGCACATGCAGAGGGAGGTGAGGAGGCAGTTTGGCTCCACAGTTGCAGGGCTCTTCTGTCTGACGTGTGCTTCTCAGTTTCACCTAATGTTCTACAGCACCAGGACGCTCCCTAATGTATTTGCACTGCCAATAGTTCTGGTAGCATTCACATCGTGGATGGCTCAGAAATATGGCCGGTTCATCAGCCTCTCTGCTCTAGTCATCATTGTGTTCCGGTCAGAGCTCTGCATCTTCCTGGGTCTCATGCTACTGACATCGCTGTTGAGCAGGAAGCTAGgactgctgcagctgctttATTATGCTGTTCCTGCTGGGATCTCGTCACTGGCTCTGACGGTGGCCATTGACACCTTCTTTTGGAGAAAGTTGTTGTGGCCTGAAGGTCAGGTTTTGTGGTACAACACTTTTCTCAACAAAAGTTCCAACTGGGGAACCTCTCCCTTCCTGTGGTACTTTTACTCTGCCGTGCCCCGCGCCCTGGGCTGCACGCTGCTCTTCGTCCCCCTGGGGCTCCTGGACCGGCGggtgaggctgctgctgctccccACCGTGGGCTTCATCCTCATCTATTCGCTGCTGCCCCACAAGGAGCTGCGCTTCATCATATACACGTTCCCTGTGCTCAGCTTGGTGGCTGCCCGAGGCTGTTCTTTCATTTTGTGCAACTACCGGAAATCCTGGATGTATAAACTGGGCGCTGCAGTTGTGGTTGGCCAGCTGTTGACCAACGCAGCGTACTCTAGTATTAGTCTCTACGTTTCCCACCACAACTACCCAGGGGGCCGAGGACTGCAGGAATTACACAGGCTGTTGCCAGTCACAGCAGATGTCTTTGTTCATATTGACACATATGCTGCTGAAACGGGAGTGTCTCGCTTCTTAGAGCAGAACAGAACCTGGAGataTGACAAACGTGAGGACATGAACCACACGAATCCTGACATCAAAATGTACTCCCACCTACTGATGGAGGCTAATGTCACCAAGATACAGCTACTCCAGGACACCCATCAGCCTCTGGCCTTCATTGAAGGGTACAGCAACATTGCTTTCGACGCGTTTCACTTTCCCCACATCAGTGTGCGATTAGAGAGAAAAGCCGTGCTCATGGAGAGAAAGATTGCAACCGGACAACAAAAAGAGTGACTTTAACAGGAATGTGTTGGATTAAGGCATTTTTAGTGACCAAAAAAATAAGACTAAAGCAACCCAAAGCAGTGTTCTCAAAGGATATAATGGGATAGATTGGAATATTATTTGTATGAAAAGAATACCACGGGTCCATCGTGTGTCTCATTCACCTACACATCAACTGCTGACATGTGCTACCCAAGTAGATAAATACATTGCATTGAACTGTCATACATCTTTTCAGATGTTTGAAATGGTTCGTTCTTCTGATACTGATGTGTAATGCATTGCTTTTCTCATGAATCGCAAGCAAAGAATTCCAAGTTTTCTTGCAGACACGAAACCATTTTCTTACAGAcagctttgtgtgtttttttttttgtttttttttacctcaggctgttatttgtatattttgtaaaatagaTTTTATAGATGAATAAAGCTGAAACTGAGTGGAGGAAACCAGATTCCTAAATTGGATAAATTTGATTCTAATTGATAACCAAAGACAAACCTCTTAGATATTGCATAAggaaaacctttatttaaaaatgacCACAACATTTGCATGGGTCCAGTCTCAATGCTAAAACATTTATCAAATTAGGTTCAGAAgtcatttaatataaaaatgtacagtacatcgTTTTACTCAATAATAAACCCATAATTTAATCCCCTGGACATAAACTTAAATTGTGCTTAAGAGACAAATTGTATATTCCAAACAAACTGCTTATTCTGAAAATACAGCAATATTATACATGATcttattaaaaacatttcagcaagtaaaaaaaaaaaaaa

Function

symbol description
alg12 Predicted to enable alpha-1,6-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ig. Orthologous to human ALG12 (ALG12 alpha-1,6-mannosyltransferase).

NR:

description
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase

GO: NA

KEGG:

id description
K03847 ALG12; alpha-1,6-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791143.1 True 2315 mRNA 0.44 9 17570902 17576427

Neighbor

gene id symbol gene type direction distance location
pim3 pim3 coding upstream 51385 17514539 ~ 17519517 (+)
il17rel NA coding upstream 221943 17331520 ~ 17348959 (+)
LOC120553489 usp15 coding upstream 273248 17276013 ~ 17297654 (+)
LOC120553077 LOC107383981,LOC106521814 coding upstream 295445 17262646 ~ 17275457 (+)
kdm5a NA coding upstream 310034 17237935 ~ 17260868 (+)
brd1a brd1,LOC101475857 coding downstream 8150 17584577 ~ 17601721 (+)
trnak-cuu_15 NA coding downstream 13664 17590091 ~ 17590163 (+)
cerk cerk,LOC103356477 coding downstream 697994 18274421 ~ 18313706 (+)
alg10 alg10,LOC108244056 coding downstream 959302 18535729 ~ 18539427 (+)
LOC120553631 NA coding downstream 1155277 18731704 ~ 18738370 (+)
LOC120553531 NA non-coding upstream 269882 17299723 ~ 17301020 (+)
G228392 NA non-coding upstream 365262 17187926 ~ 17205640 (+)
G228384 NA non-coding upstream 432551 17137271 ~ 17138351 (+)
LOC120553376 NA non-coding upstream 450318 17119099 ~ 17120584 (+)
G228375 NA non-coding upstream 455559 17113825 ~ 17115343 (+)
LOC120553790 NA non-coding downstream 25765 17602192 ~ 17800250 (+)
G228571 NA non-coding downstream 786823 18363250 ~ 18368382 (+)
G228581 NA non-coding downstream 852698 18429125 ~ 18465053 (+)
LOC120553397 NA non-coding downstream 905661 18482088 ~ 18485638 (+)
G228593 NA non-coding downstream 956874 18533301 ~ 18534349 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 648079 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 653974 16880276 ~ 16916928 (+)
stmp1 NA other upstream 703106 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 739659 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 1290841 16267136 ~ 16280061 (+)
srr srr,LOC105936311,LOC103459528 other downstream 953709 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1246405 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 1776556 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 1834063 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 2055510 19631937 ~ 19839382 (+)

Expression


Co-expression Network