LOC120553071


Basic Information

Item Value
gene id LOC120553071
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10100696 ~ 10103605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791146.1
ACTTCCTGTCGACAGTGATGAGCGTATACTATAAAAGCCCTGCAGGTTAGCACAGGcaggcagagcaacaaagagaacaggacaacTGCTGGGATCTTAACCAAGCAAGCTAAAAACAACTTCTAATCTACTGATCTTAACAGatttttttttttaattcagaaaACGATGGAATCCAAAATGACATGCAACGTGAGCAACATGTGGAGCCCCAAGTTACCCAAGGGACTGGACTTTGAGATTTCCCATCATCCACTGACCATGAAGCACGTGGTCAACCTCATCGTCGCCATGGAGAGGTTTAAGGGCAGCAGATCAACTTCGGCGCTGAGCACCGAATTCACAGATGCAAACCTGATCAACTTCATGCTAGAGAACTTAGTGGAAGAGAAaatggtgtgcgtgtgtgagtcaACTCCACAACAACAGATCATCAGGCAAAATGAGTACACGTACAGCGTGACTGACAGCGAGAAGAGGAGCTTAGTTCTGGTCCGAAACAGCATGGAGCTCCACGCAGTGACGCTGCAAGGAGGTGCTGACACCACAAAAGTTCACCTCAGCATGGCGACTTACTTGCACCCTGCATCCAGCGTTACGGGCATAACTGTGGCTCTGGGCATTAAGGAATCACCAAATCTTTACCTGTCTTGCCGCAAGGATGGTGCCGAGCCAACCTTGCATCTTGAGGTTGTGGAGGCAGACCGTCTGTGGAGGATCAGCTCGGACAGCGACATGGTGCGATTTCTCTTCTACAGACAGACCACCGGGGTGAACATCAGCACCCTCATGTCTGTTGCCTTCCCCAACTGGTACATCAGCACAGCAGCGCAAAACAACAAGCCAGTGGAAATGTGCTTGGAGTCCGCCAGTCGCCACCGAATGTTCAACATCCGTGAGATTTAACACCTGCCAAACAAACCCAACGTGGAAGGTGCATCTGGAGATCAAGTTAGACCTTCAtaagaagaaaatttggatatTGAACCAAATGTAAAATATACTGCACTTCTGCTAATTTGAATCAAAAACGCAAcaaataatttgttgtttttacaaaaGCACAACTTGTCCGCTACTAAGACTTCTGCAGGTATTACAGAGCATCTATTTACTGTATGTACCATGTACAGAAAGTGAAATGCTTAGTGTATTGACATAAGTCAAGGTTCACCAGAAGGTGGCATTATTGACCGCTAAATGACATGAGACACTGTTAATGCTTTTATctattaatgtatttatatatttatacaccatttttacgtttttatttatttgtaaatcTGCTTAATAACAACTATTTAAATTATGcacattcaaatatttaataaatctTTATAATAACT

Function

GO: NA

KEGG:

id description
K04519 IL1B; interleukin 1 beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791146.1 True 1349 mRNA 0.43 5 10100696 10103605

Neighbor

gene id symbol gene type direction distance location
chrm2a chrm2,LOC103140231,LOC106927335,LOC100534441,LOC102208075 coding upstream 70792 9952600 ~ 10029904 (+)
cd36 NA coding upstream 420881 9673991 ~ 9679815 (+)
LOC120553346 ergic2 coding upstream 826788 9268198 ~ 9273908 (+)
guca1a LOC103358093,LOC102788764 coding upstream 980711 9116805 ~ 9119985 (+)
llph llph coding upstream 1011148 9087173 ~ 9089548 (+)
LOC120553783 LOC104962829,LOC102309285,LOC102208629,LOC100697441,LOC102795594,LOC101464871 coding downstream 1326 10104931 ~ 10107801 (+)
LOC120553300 NA coding downstream 4714 10108319 ~ 10116627 (+)
foxm1 foxm1 coding downstream 37177 10140782 ~ 10147571 (+)
LOC120553731 LOC105357099,LOC107105006,LOC108233212,LOC103459183 coding downstream 57126 10160731 ~ 10161654 (+)
def6c LOC103371612 coding downstream 61892 10165497 ~ 10174114 (+)
LOC120553125 NA non-coding upstream 164103 9934175 ~ 9936593 (+)
G226930 LOC104947167 non-coding upstream 232611 9867575 ~ 9868085 (+)
G226921 mtpn non-coding upstream 274171 9796473 ~ 9826525 (+)
G226922 NA non-coding upstream 294094 9806242 ~ 9806602 (+)
G226918 NA non-coding upstream 346580 9751944 ~ 9754116 (+)
G227088 NA non-coding downstream 434591 10538196 ~ 10538689 (+)
G227107 tcp11l2,LOC102777109 non-coding downstream 521841 10625446 ~ 10627982 (+)
G227108 NA non-coding downstream 525203 10628808 ~ 10630212 (+)
G227116 NA non-coding downstream 562104 10665709 ~ 10667280 (+)
G227139 NA non-coding downstream 602305 10705910 ~ 10709545 (+)
ndufb2 ndufb2,LOC102790702 other upstream 859347 9237226 ~ 9241349 (+)
lhfpl3 lhfpl3,LOC101483460 other upstream 927476 9134594 ~ 9173220 (+)
rps16 rps16,LOC103382554 other upstream 1667999 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 2531393 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 2568619 7525892 ~ 7532077 (+)
G227121 kera other downstream 593649 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 628464 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 844680 10948285 ~ 10986201 (+)
G227216 NA other downstream 999231 11102836 ~ 11112905 (+)
G227278 LOC104928793 other downstream 1585564 11689169 ~ 11757317 (+)

Expression


Co-expression Network