LOC120553077 (LOC107383981,LOC106521814)


Basic Information

Item Value
gene id LOC120553077
gene name LOC107383981,LOC106521814
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17262646 ~ 17275457 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791155.1
CTCCTGTCCTGTTAAAATCCTAAAACATGAGCATTCACACATAAACCTCTAGAGAATGCTTCAGCCTTGAGACGAGAGTTATACACACAAGAGCAGGTGCCATGGCAATGAAAGACGATGCTGCCAAAGCGGGCCTCTCCAATGGCATCAGCCAAGCCAAGGACCAGACGCCCTCTTtggaggagaagatggaggaacGGGGCCAGTGGAGCAACAAGATAGAGTTTATTCTGTCAGTCGCCGGCTCCATCATCGGCCTGGGCAACATGTGGCGCTTCCCGTACCTCTGCTACAAAAATGGAGGAGGTGCGTTCCTCATCCCCTACATGATCTTCCTGTTCACCTGTGGTGTTCCCGTCTTCTTCCTGGAGACAGCCCTGGGCCAGTACACCAGCGAGGGAGGCATTACCTGCTGGAGAAAAATCAGTCCCCTGTTTGAAGGTCTTGGCTATGGCACCCAGGTGATCGTGACTCTGTTGAACTTCTACTACATCATTGTTCTGGCCTGGGGGATTTTCTACCTgtacttctccttctcctcggACCTGGCCTGGTCGTCCTGTAACAACACATGGAACACAGAAAACTGCATGGAGTTTCAGAGGAGAAACACCTCAATCAACCAAACGATGCACCTAAACGCCACCTCTCCTGTCATCGAGTTCTGGGAGAGAAGAGCACTAAGGATTTCCCCAGGCCTTGACCACATGGGCTCTTTGAACTGGGACCTGGCCCTGTGTCTGTTCATCGCCTGGGTCATGTGCTACTTCTGCATCTGGAAGGGGGTGAAATCCACTGGAAAGGTGGTCTACTTCACTGCGACCTTCCCCTATCTGATGCTAATTGTGCTGTTGGTCAGAGGGCTCACGCTGCCTGGAGCTGGGATTGGAATCCAGTTCTACCTTTATCCAGACCTGGGACGACTGGCAGACCCACAGGTGTGGATGGATGCTGGCACCCAGATCTTCTTCTCCTATGCCATTTGTTTAGGGTCGCTGACTGCTCTGGGAAGctacaacaaatacaacaataactGTTACAGAGATTGCCTGGCGTTGTGCTTTCTGAACAGTGGCACCAGTTTTGTGGCAGGCTTTGCAATCTTCTCCATCCTGGGTTTCATGTCATTTGAACAGAATGTTCCCATTTCAGAGGTGGCAGAATCTGGTCCTGGCCTGGCCTTCATAGCTTACCCCCGAGCTGTGAGCATGATgcctttctctcctctgtgggCCGCCCTCTTCTTCATCATGATTGTTTTTCTGGGGCTTGACAGCCAGtttgtgtgtgtcgaGAGCCTTGTGACTGCGATAGTCGACATGTACCCTGCTGTGTTCAGACGTAAAAACCGCAGGGAGCTCTTCCTGTTAGGTGTggtcttcttctccttcttcatggGCCTCATCATGCTGATGGAGGGAGGCATGTATGTTTTCCAGCTCTTTGATTACTACGCAGCCAGTGGCATGTGTCttctcttcatgtccatctttGAGACTGTCTGCATTGCATGGGTCTATGGTGCAGATCGCTTTTATGATAACATTGAGGACATGATCGGCTACCGCCCAGGACCTTACATCAAATACTGTTGGTTGTTCTTCACCCCAGCCACATGCATTGGTACCTTTGCCTTCTCTCTCATCAAATATACCCCTCTAAAGTACAACAATGAGTATGTGTACCCGTGGTGGGGCTATGTCATTGGCTGGCTGCTCGCTCTTTCCTCCATGGTCTGTATTCCGCTTTGGATGGTGTACAAGATCAGCACCACCCAAGGGACTTTCAGAGAGCGCATCCAGTTGCTTATCACACCATCTGACACCTTACCCAAAACCAAGAGGGAGCaggaaaggttactggccatCTTTGCTCCTGAGGGAGACGTTTCCATGGCTAGAAATGGCTACTTACCTGTCTTAGAGACAGACTCCAACTTATGAGGCCCCAGTGGGGATGGGAAAGACATGTGGGTTTTCCATCCTTGACTCGCTGCACCATTGCCTTCATCCTAAAGACACTGCAGGGAAAGATACAAGATGTCACATTGTCTACTTAAATGCATAACAGAATATGGGAGGACTCAGGAGATAATAGGACTACAGTATGTTTGGCAGTGCCTGTAAATTTCAGGGATGGCAGCAATGTGATAAAAGAaggataaagaaaataaaaagtcatcTATTGGATTACTTAGAAGCTTTAGAGGGAACAAAGGTATTTTTTTCAGGGATACAAGTTATTTACGCTACTTAATCTGACATCTATTAATACATTGTCATATGCTGTTCAGCTCTGCATTTCACAGATGATGTAAATGAAGTGATTCAGGGTCAGCTGAAATCTACTAGTCAGCCTTGTTGTTGAAAATGTTACAATGTTATAATAGAGGTtaatggcatttaaaaaaaatctcattcaAGGGTGTTAATTGTAGAGACTAACATACAGGTTACACTAAAAGTTTAATAATAAATCTTATAGTTTGCATAATAAGGATGACGTTTGTGCAAATGTAACACTAAGACAGCAAAATCAGTATGGAACAGGTTAACCATTTGTTACCGCTACATGTATGTTGTGGTATGTTACTTTTTAAACTAAAGTATCATGTGTATCTGACGTCACTTCATGGCTACTTTGCCACATTTGTATCATCTATTGTATTATCATAAACTGATTGGGGaaagttttcttttgtattgacaagaaataaaaatgttgtatttCACATGACTAGACCTTGTAGTGAAAGGATATAATATCAGTGAAAGTTATAATACTGTACCACTGCAAAAGTCGTAGAACTAACATGACATATACAATGTACAAACGTAGTTTCATATTTTGAACTGTAACATTATGCAACTGTACAAAGAAACTTGTAagtatgtttttaaataaacatg

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like

GO: NA

KEGG:

id description
K05046 SLC6A13, GAT2; solute carrier family 6 (neurotransmitter transporter, GABA) member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791155.1 True 2909 mRNA 0.45 15 17262646 17275457

Neighbor

gene id symbol gene type direction distance location
kdm5a NA coding upstream 1778 17237935 ~ 17260868 (+)
LOC120553078 LOC104966316,LOC103366982,LOC104933494 coding upstream 25209 17234012 ~ 17237437 (+)
wnt7ba wnt7b,LOC106575957 coding upstream 65789 17188186 ~ 17196857 (+)
LOC120553296 LOC103372063 coding upstream 229924 17021892 ~ 17032722 (+)
cdkn1d NA coding upstream 257332 17000945 ~ 17005314 (+)
LOC120553489 usp15 coding downstream 556 17276013 ~ 17297654 (+)
il17rel NA coding downstream 56063 17331520 ~ 17348959 (+)
pim3 pim3 coding downstream 239082 17514539 ~ 17519517 (+)
alg12 alg12 coding downstream 295445 17570902 ~ 17576427 (+)
brd1a brd1,LOC101475857 coding downstream 309120 17584577 ~ 17601721 (+)
G228392 NA non-coding upstream 57006 17187926 ~ 17205640 (+)
G228384 NA non-coding upstream 124295 17137271 ~ 17138351 (+)
LOC120553376 NA non-coding upstream 142062 17119099 ~ 17120584 (+)
G228375 NA non-coding upstream 147303 17113825 ~ 17115343 (+)
G228374 NA non-coding upstream 150223 17109768 ~ 17112423 (+)
LOC120553531 NA non-coding downstream 24266 17299723 ~ 17301020 (+)
LOC120553790 NA non-coding downstream 326735 17602192 ~ 17800250 (+)
G228571 NA non-coding downstream 1087793 18363250 ~ 18368382 (+)
G228581 NA non-coding downstream 1153668 18429125 ~ 18465053 (+)
LOC120553397 NA non-coding downstream 1206631 18482088 ~ 18485638 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 339823 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 345718 16880276 ~ 16916928 (+)
stmp1 NA other upstream 394850 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 431403 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 982585 16267136 ~ 16280061 (+)
srr srr,LOC105936311,LOC103459528 other downstream 1254679 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1547375 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 2077526 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 2135033 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 2356480 19631937 ~ 19839382 (+)

Expression


Co-expression Network