LOC120553078 (LOC104966316,LOC103366982,LOC104933494)


Basic Information

Item Value
gene id LOC120553078
gene name LOC104966316,LOC103366982,LOC104933494
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17234012 ~ 17237437 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791156.1
CTGAAGGGGGCCGGGAGACACCTCTTGCAGAAAGAGTGAAGACACGGTAGGAGTTTGGGCTCTCGGTTGTGGAAGCTCAACTTGCAGATAGGACAAGTGTCCATGAGCCCGAAGTTATTTGCCAGTTTGAGTGGGAGGATGCTCTTTCTACCTGGGAGGAGTCATTGCTGTGGGCAAAGTGCAGTAGGACATTGACTGTGTCAACGTCTACCATTTGGCATATATAACCTGGGTCCTTAAATAAAGACACAAACAGCAGCACTGGGAAAGTGACTGACACTTTGATGAGCATGGACTTCACAGCTGAGAATCACTCCATTCCTCTGAGTGATGGAAACAGCATACCTTTGATGGGACTGGGAACTTATGGGGATCCCCGCAGGacCCCTAAAGGAACTACATATGAATCAGTCAAAGTGGCTATTGAAACAGGGTACAGACACCTTGATGGGGCTTTGGTCTATTTCAATGAACATGAGGTGGGACAAGCTATAAGGGAGAAAATTGCAGATGGAACTGTAAAAAGAGAGGACATATTTTACTGTGGAAAGTTGTGGAACACATTCCATCCCCCGGGATTGGTTCGACCTGCTTTGGAGAAAACGTTGAAGACATTACAGCTGGATTACGTCAACCTCTATATTGTAGAAATGCCCACAGCCTTCAAGccagGAGATACATATTACCCCAGAGATGAGAATGGGAAGTACATTTATCACCAAACAGATCTCTGTGCAACATGGGAGGCTTTGGAGGCTTGCAAAGATGCTGGGCTGATAAAATCTCTTGGAGTATCCAACTTCAACAAGAGACAACTGGAGTTGATCCTTAACAAACCTGGGCTGAAACACAAGCCTGTGTCAAACCAGgTTGAATGCCATCCATATTTCACTCAGCCAAAGTTGCTTGAGTTCTGCCAGCAGAATGATATTGTCATTGTGGGATACAGCCCTTTGGGGACATCTAGAGATGCATCCTGGGTGAACCTAAAATGCCCCCCGTTGTTGGAAGATGAGCTACTGGCATCAATTGCTAAAAAGTATAACAAGACCACCGCCCAGGTGGCCTTGAGGTTCAACGTGCAGAGAGGAGTGGTGGTCATCCCAAAGAGCTTCAACCCTGTTCGAATAAAGGAAAACTTTCAGATATTCGACTTCTCTCTTTCTGAGACTGAGATGAAGGCAATTGAGGGATTGAACAAGAATACTCGTTTTGTGGAACTTCTCATGTGGTCTGATCACCCAGAGTATCCATTTCATGATGACTACTAGATGCCATAGATGTCAAGACTTCAGCTAAATTGGATCAAATAAGCTGGCTTGTTCACTTTGTTGCTTTTACAATGTTTTGTGCCTTTACTTGAAAAAGAATTTTTATAGCACTATTATTACAGTACATTTTATGAAATAAATACTTGTATCGATTAAAGCCACTTTATTAAAACAGA

Function

NR:

description
PREDICTED: 3-oxo-5-beta-steroid 4-dehydrogenase-like

GO: NA

KEGG:

id description
K00251 AKR1D1; 3-oxo-5-beta-steroid 4-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791156.1 True 1447 mRNA 0.44 10 17234012 17237437

Neighbor

gene id symbol gene type direction distance location
wnt7ba wnt7b,LOC106575957 coding upstream 37155 17188186 ~ 17196857 (+)
LOC120553296 LOC103372063 coding upstream 201290 17021892 ~ 17032722 (+)
cdkn1d NA coding upstream 228698 17000945 ~ 17005314 (+)
LOC120553739 ascl4,LOC103372058 coding upstream 253255 16980006 ~ 16980757 (+)
tnnt2e NA coding upstream 379138 16833664 ~ 16854874 (+)
kdm5a NA coding downstream 498 17237935 ~ 17260868 (+)
LOC120553077 LOC107383981,LOC106521814 coding downstream 25209 17262646 ~ 17275457 (+)
LOC120553489 usp15 coding downstream 38576 17276013 ~ 17297654 (+)
il17rel NA coding downstream 94083 17331520 ~ 17348959 (+)
pim3 pim3 coding downstream 277102 17514539 ~ 17519517 (+)
G228392 NA non-coding upstream 28372 17187926 ~ 17205640 (+)
G228384 NA non-coding upstream 95661 17137271 ~ 17138351 (+)
LOC120553376 NA non-coding upstream 113428 17119099 ~ 17120584 (+)
G228375 NA non-coding upstream 118669 17113825 ~ 17115343 (+)
G228374 NA non-coding upstream 121589 17109768 ~ 17112423 (+)
LOC120553531 NA non-coding downstream 62286 17299723 ~ 17301020 (+)
LOC120553790 NA non-coding downstream 364755 17602192 ~ 17800250 (+)
G228571 NA non-coding downstream 1125813 18363250 ~ 18368382 (+)
G228581 NA non-coding downstream 1191688 18429125 ~ 18465053 (+)
LOC120553397 NA non-coding downstream 1244651 18482088 ~ 18485638 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 311189 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 317084 16880276 ~ 16916928 (+)
stmp1 NA other upstream 366216 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 402769 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 953951 16267136 ~ 16280061 (+)
srr srr,LOC105936311,LOC103459528 other downstream 1292699 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1585395 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 2115546 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 2173053 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 2394500 19631937 ~ 19839382 (+)

Expression


Co-expression Network