myf6 (myf6)


Basic Information

Item Value
gene id myf6
gene name myf6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8462324 ~ 8464094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791157.1
CCTGTTGCTCTGTTCAAATGCCAGAGTCCCACTGTCAAAACAGAGAGAGGGGCGCAACAATATGATGGACCTTTTTGAGACCAACCCTTATCTTTTCAATGATTTGCGCTATTTGGAAGAAGGGGATCATGGACCACTACAGCACCTGGACATTTCCGGGGTGTCTCCTCTGTACAACGGCAATGACAGCCCGCTGTCCCCGGGCCAGGATAATGTTCCGTCTGAGACCGGGGGGGAGAGCAGCGGGGAAGAGCACGTCCTTGCGCCCCCGGGTCTCCGGACGCACTGCGACGGCCAGTGCCTCATGTGGGCCTGCAAGATCTGCAAGAGAAAGTCAGCGCCGACGGATAGACGCAAGGCCGCCACGCTCCGGGAGAGGAGGAGGCTCAAGAAGATCAACGAGGCCTTCGACGTGCTGAAGAGGAAGACCGTGGCCAACCCCAACCAGAGGCTACCCAAGGTGGAGATTTTACGCAGCGCCATTAGTTACATAGAGAGCTTACAGGATCTGCTGCAGACGCTGGACGAGCAGGAGAAACCGCAAAACGGATCATCCCACAAAGAACACCGTGTGGAGTATCACTGGAAAAAGTCCTCAGAGACCTGGCCGACCTCTGCCGACCATTCCACTGCAGCAATAATAAACCAGAGAGAAGGAACCAGTGAGTCTTCTGCATCCTCCAGCCTCCTGCGTCTGTCCTCCATCGTGGACAGCATCACcaacagcgacaaaaaaaaCTTCTCCACAAACTGAAACATAAGCGAAGACCTCGACTATAGACAACAATTTTCGAATTTCCATTATTTATCTCTAAATTATTTCCACTATATTCAGCCATTCTGGCTTCTGTTTATGTAGTCTTCATTTGTACAGCAGgagcaacaaatttgtacatattttataataatgtttagctttatttattttatattcaaAAGCAGATAAATTCCTTTAAGAAAGCTGATAttgtatttaaatatttgtacatAACTGACCAAGCcaataaattaaacttttgcaATACTCTAAACCACTACTTTCCTAATTCTTCAAGGGCATGCTGGACAGGAAAGTGCATCCATGTATTTGATGTAACAATAGGCAATTCAAGCATCACACCACATATAGAGACTCTTTAAGCTTCTTTACCAttgcaatgttaaaaacaacaatcgTCATGGAGAGTTTAAAATTTCTAC

Function

symbol description
myf6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within skeletal muscle tissue development. Predicted to be located in nucleus. Is expressed in several structures, including Rohon-Beard neurons; adaxial cell; fin; muscle precursor cell; and musculature system. Human ortholog(s) of this gene implicated in congenital structural myopathy. Orthologous to human MYF6 (myogenic factor 6).

NR:

description
myogenic factor 6-like

GO: NA

KEGG:

id description
K18485 MYF6, MRF4; myogenic factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791157.1 True 1200 mRNA 0.46 3 8462324 8464094

Neighbor

gene id symbol gene type direction distance location
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding upstream 449513 7978077 ~ 8012811 (+)
tnnt2c LOC102777397 coding upstream 564841 7895545 ~ 7897483 (+)
LOC120553463 LOC103356656 coding upstream 574799 7869761 ~ 7887525 (+)
LOC120553589 parpbp,LOC102779589 coding upstream 856486 7592879 ~ 7605838 (+)
LOC120553155 pah coding upstream 900119 7546428 ~ 7562205 (+)
myf5 myf5 coding downstream 4567 8468661 ~ 8471034 (+)
acss3 acss3 coding downstream 51494 8515588 ~ 8565355 (+)
washc3 ccdc53 coding downstream 338454 8802548 ~ 8807170 (+)
gnptab gnptab coding downstream 354476 8818570 ~ 8845025 (+)
atp6v1e1b LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460 coding downstream 454140 8918234 ~ 8926796 (+)
G226554 NA non-coding upstream 53665 8341630 ~ 8408659 (+)
G226556 ppp1r12a non-coding upstream 103042 8356330 ~ 8359282 (+)
G226515 NA non-coding upstream 155496 8260333 ~ 8306828 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding upstream 404707 8047779 ~ 8057617 (+)
G226505 NA non-coding upstream 433663 8024361 ~ 8028661 (+)
LOC120553277 NA non-coding downstream 153720 8617814 ~ 8620495 (+)
G226638 NA non-coding downstream 405924 8870018 ~ 8870711 (+)
G226641 mybpc1 non-coding downstream 417723 8881817 ~ 8883677 (+)
G226720 NA non-coding downstream 470956 8935050 ~ 8935551 (+)
LOC120553611 NA non-coding downstream 477747 8941841 ~ 8943537 (+)
rps16 rps16,LOC103382554 other upstream 29627 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 893021 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 930247 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1036070 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1061925 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 670500 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 773132 9237226 ~ 9241349 (+)
G227121 kera other downstream 2233160 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 2267975 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 2484191 10948285 ~ 10986201 (+)

Expression


Co-expression Network