LOC120553085 (LOC103357120)


Basic Information

Item Value
gene id LOC120553085
gene name LOC103357120
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21816182 ~ 21827934 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791161.1
TCAACTTGTTTCTTCGTGAATGGAATGTAGACAGATTCACTCTTATGAGAAACTGATAATAGGGGCAGGATGAACAAAGCTGCTGTTTAGTATGTGCTGTGACGGTGCTTTAGTGAGCTCGGCGGAAAGTGAGGAGTACATCAACTCAAAACCGAAACTGATGCTGCATTTGAACGTTGCTTCTGCCGAAGGATGGACAaagcacaacaacaaaaaggacTGGTTGATCACATGACCAGCTTGGAGAACACCCATGGCTCGTGTCCCGGAGCTGCTCTTGGCCACTTTGGAGGAGCTGCTTGATAAAGAGCTGAGGACTTTCCAGTGGTTTCTGTCCAGTAATGTTCTCGAAGGATTCCCTCATATTCCAAAGTCGCGAGTCGATAGGGTGGACAGGCCGCGCACTGTGGATCTTTTGGTGCAGACTTATGGCTACAACGGTGCCGTTACTGTCACAGTGGATATACTGATGAGAATGAAACTTAAACTGTGGGCTGAAACACTGAAGGAGAACTACGATGAAgTTCCAAGCAATCAAATAGGCAAAGAAATCGACCATCAAGCAATACGAAAAAAACTGAGATCCACCGTGATGACAAAGTACCAAAACATTTACGAGGGGAATGCAGATGAAGGAGACACCATCTACCTGAACAAAATCTACACCGAACTGCGCTTGATCGAAGGAGACTGGGGAGGCTTCAGCAATGAGCATGAGGTCAGACAGCGGAGGTCCAACGATGTGACGACAGAAGAAACCTCCATTAAAGCGAGCAACATTTTCAAACCAACGCACAACCAAGAGAAGCGAATCAGAACTGTGCTTACCCAGGGTATACCTGGAGTGGGTAAAACTGTCTGCACACAGAAGTTTACCCTAAGCTGGGCTGAAGGCGAGGAAAATCAGGACATAACCTTCCTCTTCCCGCTTCCTTTCCGTGAACTGAATCCAAACATCGGCGAGAAAGACTACAGTCTGATGCAGCTGCTCCATCAGTTCTTCCCTGAGATGAAACCTCTTGAGGCGCTGGGAACAGAATGCAAAGTCCTCTTCATCTTCGACGGCCTGGACGAGACTCTCCTCCCCTTGGACTTCAAGCACAACAAGGTCTTGAGAGATGAGACTGAGCCGGCCTCTCTAGATGTGCTGATCACCAACCTCATCACCGGAGATCTGCTTGGCAACGCTCTCATCTGGATCACGTCTAGACCTGCGGCAGCAAGCCGTATCCCCCGAAAGCACATCCACCAATGGACGGAGGTGAAGGGCTTTGCAAATGAACAGAGGGAGGAATACTTTAGGAAGCGTTTGCACAATGATAACCTCGCCACCAGGATCATCAACCATGTGAAGTCATCAAGAAGCCTCGACATCATGTGTCAGATACCAGTTTTCTGCTGGATCACAGTCACCGTAATGAAGAAAGTTTTGCACGACAATGTGACAGGAGGCATGCCCAACACCCTGACCGAGATGTATGCGTATCTCCTTCTCTGCCAGACAGACCGGATGATAGAGGGGCACTACCCAATGTCAAGTGACAATGTTGTCTTGAAGCTAGCGGAGCTGGCATTCCGCCAACTGGAGAAAGGCAAACTGATCTTCTACGAGACTGACTTGAAAGAGTGCGGCATGGATGTCAAAGAGGCGACCATCTACTCAGGAGTTTGCACAGAGCTGTTTGTGATGGAGGGCCGAAGGAGGAGAGAAGTTTTTAGCTTTGTACATTTAACCATCCAGGAGTTTCTCGCAGCTGTGTATGTCCGTCATTCCTACATGcaaagaaaggaaaatgttcTTCTTGGACACCTGAAAAGGATGTCTACCAGATGGCTCCCCAAGTCTGTGTTCAGTTTTCACAAGACTGCCATCGAAAAAGCCTTGGAGAGTCCAGACGGCCGCTGGGACCTCTTCCTTCGCTTTCTGCTGGGGCTGTCGCTGAAGCCGAACCAAGAGCTCCTCGGTAGAATACTGTCTTTGGGAGCTGAAGGAAAAGAGGATGTGGAGAGAACCGTCCAGTTTATCAAAGAGAAGATTAGAGAGGATCCAGAGTCCAAGCTCAACCTCTTCCACTGCCTGAGTGAGCTCAAAGAGGAGTCTTTGGTGCAGGAGATCCAGAGCTTTGTGAGTTCTGGGAGGCTTGATGCCAAAAAGTTGTCTCCGGTCCAGTGGTCCGCGCTCACTTTCGAACTGATGACATCAGAGGCCACAGAGGAAGAGTTTGACTTGAAGAAGTACATAAGATCAGAAGAAGGGGTAGTAAAGCTGCTGACTGTCATTACTTCCTCCACACGTGCTCTGCTAAATCACTGTAACCTCACTGAGAACTGCTGTAACGATTTGGCCTCCGCGCTGAGCTCGACCTCCTCTCACCTCACAGAACTGGACCTGAGTGACAACAACCTGAAGGATTCAGGGGTGAAACTGCTTTCTGTTGGATTAGGGAGTCCACACTGTAAACTTAGGAGTTTAAGATTACATAAATGTAAACTGGAAGGAGACTGCTGTGAGGTACTGGCTGTTGCTCTCAGCACAGAGTCTACCCAACTCAGAGAACTGGACCTGAGTGCTAATGACTTCCAGGAAGCAGGAGTCAAGGCTCTGTGTGCGGGACTCTGTAGCCACCACTGCAAACTACAAACAGTGAGaaATCCCTGCTGTTTTGATGTACACTCTTACAGGTTCAACCAGTGCAAGCTGAAAGAGAACTGCTGTGCCAATTTGGCTACAGTTTTGAGTTCAGGCGCATCGCACCTGAAATTTCTTGACCTGAGCAACAACAGCCTGAAGGATTCTGGTGTATCTCTGCTTACTGCTGGACTGAGGAGTCCACACTGTAGACTGGAAACACTACGGCTCAGCTGGTGTGGCCTTACACATAAATGCTGCAGTCACATTGGCTCTGCTCTGAGCTCTGACTCTACCTCCAtcagagagctggacctgagtggAAACAACCTGCAGGGTCCAGGCATTCAGCTGCTGTGTGCTGGACTGAGAAGTCCACACTGTAAACTGGAAACACTAAGGTTAAATGAGTGCAATCTCCAGAAATGCTGTGCGGATTCGGCCTCAGTCCTCAGCTGCGACACCTCTCACCTGAAGGAGCTTGATCTGAGTGGGAACGACCTGCAGGACTCTGAAGTGAAGCGGCTCTCTTCTGGATTGGCGAGTCCGGCCTGTAAACTGGAGACGTTAAGGCTGTCATTCTGCGGAGTCACAGAGAAAGGCTGTGTGTATTTGGCTTCAGCGCTGAGCTCCAACCCTTCTCACCTGAAGCAGCTTGACCTCAGCTACAACTACGTGCAGGACTCGGGAGTGAAGCTGATCTCTGTTCATTTGAATGACCCGCTCTATAAACTGGAAAAATTCagTGTGGACAATAATGCAGAGTGCTACCTGAAATCAACACTGAAAAACTATGCATGTACACTCAcgctggacacaaacacagctgccaGATCTCTCTTTCTGTACGACGGAGGAAAGCAGGGGACGTGGGTCAGGGAGAGACAGCAGTACTCAGATCACCCCGAGAGGTTCGAGAGCGTCTCACAGGTGTTGTGTCACCAAGGCCTCACCAAACGCCACtactgggaggtggagtggCGAGGACGCTGGGTGGATGTTGCCGTGGCGCTGAAGGGGATCCGTCGGAGGGCGAGCTCTAACCTCTGCGGGTTTGGCTACACAGATCAATCCTGGAGTCTGTTCTGCTCTGAGGATCACTACAGCGCTCACCACGACCACCAGCCTGTGGAAATACCCGCACCTCCGTCTCGCTCCCACAAGGTGGGAGTCTATCTGGACTGGCCGGGTGGCACcctgtccttctacagcgtctccTTTGGGACCCTCAGCCACCTTCATACGTTCTACAGCAACTTCACTGAGCCTCTCTACCCAGGGTTTGGGATGGAGGAAGATGACTGCTCTGTAACTATTTCTACAGTGGAGGGCTTGCAAGAACTCATTTCTCGGTCAGCTAGTGCAGAAAGAATTGACCAATTCTGAGTGCAGGTTCATTTGGGGAATTGAAGgaaattgtgtttttctgcTCACAGAGAGTGGCAGCAGTGCTGGAGAAAGAGATGTGATGaacaggggggaaaaaaaagaatgctgTATTCTCACTGTATTTTCACTTAGGTTGTCTAAGTTATATTTAAAATCAAACATGAAggacaaaatatatattatgtgaAAACATGGACATTGGAAAAATGTGGATTGGTAGCATCTTTCATTAAAAAGGTTTCTGTTCAACAGCCAATTGTAAACTTCCATCTATAATCTTCCAACCTGCACATAGATGCAC
>XM_039791162.1
TCAACTTGTTTCTTCGTGAATGGAATGTAGACAGATTCACTCTTATGAGAAACTGATAATAGGGGCAGGATGAACAAAGCTGCTGTTTAGTATGTGCTGTGACGGTGCTTTAGTGAGCTCGGCGGAAAGTGAGGAGTACATCAACTCAAAACCGAAACTGATGCTGCATTTGAACGTTGCTTCTGCCGAAGGATGGACAaagcacaacaacaaaaaggacTGGTTGATCACATGACCAGCTTGGAGAACACCCATGGCTCGTGTCCCGGAGCTGCTCTTGGCCACTTTGGAGGAGCTGCTTGATAAAGAGCTGAGGACTTTCCAGTGGTTTCTGTCCAGTAATGTTCTCGAAGGATTCCCTCATATTCCAAAGTCGCGAGTCGATAGGGTGGACAGGCCGCGCACTGTGGATCTTTTGGTGCAGACTTATGGCTACAACGGTGCCGTTACTGTCACAGTGGATATACTGATGAGAATGAAACTTAAACTGTGGGCTGAAACACTGAAGGAGAACTACGATGAAgTTCCAAGCAATCAAATAGGCAAAGAAATCGACCATCAAGCAATACGAAAAAAACTGAGATCCACCGTGATGACAAAGTACCAAAACATTTACGAGGGGAATGCAGATGAAGGAGACACCATCTACCTGAACAAAATCTACACCGAACTGCGCTTGATCGAAGGAGACTGGGGAGGCTTCAGCAATGAGCATGAGGTCAGACAGCGGAGGTCCAACGATGTGACGACAGAAGAAACCTCCATTAAAGCGAGCAACATTTTCAAACCAACGCACAACCAAGAGAAGCGAATCAGAACTGTGCTTACCCAGGGTATACCTGGAGTGGGTAAAACTGTCTGCACACAGAAGTTTACCCTAAGCTGGGCTGAAGGCGAGGAAAATCAGGACATAACCTTCCTCTTCCCGCTTCCTTTCCGTGAACTGAATCCAAACATCGGCGAGAAAGACTACAGTCTGATGCAGCTGCTCCATCAGTTCTTCCCTGAGATGAAACCTCTTGAGGCGCTGGGAACAGAATGCAAAGTCCTCTTCATCTTCGACGGCCTGGACGAGACTCTCCTCCCCTTGGACTTCAAGCACAACAAGGTCTTGAGAGATGAGACTGAGCCGGCCTCTCTAGATGTGCTGATCACCAACCTCATCACCGGAGATCTGCTTGGCAACGCTCTCATCTGGATCACGTCTAGACCTGCGGCAGCAAGCCGTATCCCCCGAAAGCACATCCACCAATGGACGGAGGTGAAGGGCTTTGCAAATGAACAGAGGGAGGAATACTTTAGGAAGCGTTTGCACAATGATAACCTCGCCACCAGGATCATCAACCATGTGAAGTCATCAAGAAGCCTCGACATCATGTGTCAGATACCAGTTTTCTGCTGGATCACAGTCACCGTAATGAAGAAAGTTTTGCACGACAATGTGACAGGAGGCATGCCCAACACCCTGACCGAGATGTATGCGTATCTCCTTCTCTGCCAGACAGACCGGATGATAGAGGGGCACTACCCAATGTCAAGTGACAATGTTGTCTTGAAGCTAGCGGAGCTGGCATTCCGCCAACTGGAGAAAGGCAAACTGATCTTCTACGAGACTGACTTGAAAGAGTGCGGCATGGATGTCAAAGAGGCGACCATCTACTCAGGAGTTTGCACAGAGCTGTTTGTGATGGAGGGCCGAAGGAGGAGAGAAGTTTTTAGCTTTGTACATTTAACCATCCAGGAGTTTCTCGCAGCTGTGTATGTCCGTCATTCCTACATGcaaagaaaggaaaatgttcTTCTTGGACACCTGAAAAGGATGTCTACCAGATGGCTCCCCAAGTCTGTGTTCAGTTTTCACAAGACTGCCATCGAAAAAGCCTTGGAGAGTCCAGACGGCCGCTGGGACCTCTTCCTTCGCTTTCTGCTGGGGCTGTCGCTGAAGCCGAACCAAGAGCTCCTCGGTAGAATACTGTCTTTGGGAGCTGAAGGAAAAGAGGATGTGGAGAGAACCGTCCAGTTTATCAAAGAGAAGATTAGAGAGGATCCAGAGTCCAAGCTCAACCTCTTCCACTGCCTGAGTGAGCTCAAAGAGGAGTCTTTGGTGCAGGAGATCCAGAGCTTTGTGAGTTCTGGGAGGCTTGATGCCAAAAAGTTGTCTCCGGTCCAGTGGTCCGCGCTCACTTTCGAACTGATGACATCAGAGGCCACAGAGGAAGAGTTTGACTTGAAGAAGTACATAAGATCAGAAGAAGGGGTAGTAAAGCTGCTGACTGTCATTACTTCCTCCACACGTGCTCTGCTAAATCACTGTAACCTCACTGAGAACTGCTGTAACGATTTGGCCTCCGCGCTGAGCTCGACCTCCTCTCACCTCACAGAACTGGACCTGAGTGACAACAACCTGAAGGATTCAGGGGTGAAACTGCTTTCTGTTGGATTAGGGAGTCCACACTGTAAACTTAGGAGTTTAAGATTACATAAATGTAAACTGGAAGGAGACTGCTGTGAGGTACTGGCTGTTGCTCTCAGCACAGAGTCTACCCAACTCAGAGAACTGGACCTGAGTGCTAATGACTTCCAGGAAGCAGGAGTCAAGGCTCTGTGTGCGGGACTCTGTAGCCACCACTGCAAACTACAAACAGTGAGGTTCAACCAGTGCAAGCTGAAAGAGAACTGCTGTGCCAATTTGGCTACAGTTTTGAGTTCAGGCGCATCGCACCTGAAATTTCTTGACCTGAGCAACAACAGCCTGAAGGATTCTGGTGTATCTCTGCTTACTGCTGGACTGAGGAGTCCACACTGTAGACTGGAAACACTACGGCTCAGCTGGTGTGGCCTTACACATAAATGCTGCAGTCACATTGGCTCTGCTCTGAGCTCTGACTCTACCTCCAtcagagagctggacctgagtggAAACAACCTGCAGGGTCCAGGCATTCAGCTGCTGTGTGCTGGACTGAGAAGTCCACACTGTAAACTGGAAACACTAAGGTTAAATGAGTGCAATCTCCAGAAATGCTGTGCGGATTCGGCCTCAGTCCTCAGCTGCGACACCTCTCACCTGAAGGAGCTTGATCTGAGTGGGAACGACCTGCAGGACTCTGAAGTGAAGCGGCTCTCTTCTGGATTGGCGAGTCCGGCCTGTAAACTGGAGACGTTAAGGCTGTCATTCTGCGGAGTCACAGAGAAAGGCTGTGTGTATTTGGCTTCAGCGCTGAGCTCCAACCCTTCTCACCTGAAGCAGCTTGACCTCAGCTACAACTACGTGCAGGACTCGGGAGTGAAGCTGATCTCTGTTCATTTGAATGACCCGCTCTATAAACTGGAAAAATTCagTGTGGACAATAATGCAGAGTGCTACCTGAAATCAACACTGAAAAACTATGCATGTACACTCAcgctggacacaaacacagctgccaGATCTCTCTTTCTGTACGACGGAGGAAAGCAGGGGACGTGGGTCAGGGAGAGACAGCAGTACTCAGATCACCCCGAGAGGTTCGAGAGCGTCTCACAGGTGTTGTGTCACCAAGGCCTCACCAAACGCCACtactgggaggtggagtggCGAGGACGCTGGGTGGATGTTGCCGTGGCGCTGAAGGGGATCCGTCGGAGGGCGAGCTCTAACCTCTGCGGGTTTGGCTACACAGATCAATCCTGGAGTCTGTTCTGCTCTGAGGATCACTACAGCGCTCACCACGACCACCAGCCTGTGGAAATACCCGCACCTCCGTCTCGCTCCCACAAGGTGGGAGTCTATCTGGACTGGCCGGGTGGCACcctgtccttctacagcgtctccTTTGGGACCCTCAGCCACCTTCATACGTTCTACAGCAACTTCACTGAGCCTCTCTACCCAGGGTTTGGGATGGAGGAAGATGACTGCTCTGTAACTATTTCTACAGTGGAGGGCTTGCAAGAACTCATTTCTCGGTCAGCTAGTGCAGAAAGAATTGACCAATTCTGAGTGCAGGTTCATTTGGGGAATTGAAGgaaattgtgtttttctgcTCACAGAGAGTGGCAGCAGTGCTGGAGAAAGAGATGTGATGaacaggggggaaaaaaaagaatgctgTATTCTCACTGTATTTTCACTTAGGTTGTCTAAGTTATATTTAAAATCAAACATGAAggacaaaatatatattatgtgaAAACATGGACATTGGAAAAATGTGGATTGGTAGCATCTTTCATTAAAAAGGTTTCTGTTCAACAGCCAATTGTAAACTTCCATCTATAATCTTCCAACCTGCACATAGATGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791161.1 True 4319 mRNA 0.49 11 21816182 21827934
XM_039791162.1 False 4286 mRNA 0.49 11 21816182 21827934

Neighbor

gene id symbol gene type direction distance location
LOC120553490 ano4,LOC102780176 coding downstream 62911 21684210 ~ 21753271 (-)
slc38a4 slc38a4 coding downstream 245069 21518625 ~ 21571113 (-)
gas2l3 gas2l3 coding downstream 451074 21335537 ~ 21365108 (-)
med21 med21,LOC102798687 coding downstream 514926 21295513 ~ 21301256 (-)
LOC120553384 stk38l coding downstream 522946 21269874 ~ 21293236 (-)
selenoo2 LOC106935628,LOC103357121,LOC107081058 coding upstream 1077 21829011 ~ 21836596 (-)
apex1 apex1 coding upstream 62676 21890610 ~ 21894722 (-)
si:ch211-214j24.10 LOC103357125,LOC104922658 coding upstream 100305 21928239 ~ 21935396 (-)
LOC120553803 LOC103357126 coding upstream 109404 21937338 ~ 21945575 (-)
nav3 nav3 coding upstream 120802 21948736 ~ 22179107 (-)
LOC120553093 NA non-coding downstream 38506 21777033 ~ 21777676 (-)
G229413 NA non-coding downstream 133643 21681560 ~ 21682539 (-)
G229392 NA non-coding downstream 160020 21655902 ~ 21656162 (-)
G229390 NA non-coding downstream 173414 21642515 ~ 21642768 (-)
G229351 scaf11,LOC102797309 non-coding downstream 363030 21450463 ~ 21453152 (-)
G229527 LOC108228952,LOC107098074,LOC105922964,LOC106609550,LOC103375704 non-coding upstream 26449 21854383 ~ 21856289 (-)
G229539 NA non-coding upstream 50338 21878272 ~ 21878705 (-)
G229541 NA non-coding upstream 51970 21879904 ~ 21880220 (-)
G229546 NA non-coding upstream 84471 21912405 ~ 21947509 (-)
G229558 NA non-coding upstream 492339 22320273 ~ 22320528 (-)
LOC120553090 NA other downstream 5085 21771088 ~ 21811097 (-)
slc38a2 slc38a2 other downstream 341580 21461076 ~ 21474602 (-)
ptprz1b NA other downstream 670649 21063691 ~ 21145533 (-)
G229199 NA other downstream 857962 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 1461555 20301092 ~ 20354627 (-)
G229716 NA other upstream 1276826 23104760 ~ 23239573 (-)
glipr1a NA other upstream 1375834 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 1862585 23690519 ~ 23711804 (-)
G229907 NA other upstream 1871763 23699697 ~ 23700198 (-)
LOC120553046 NA other upstream 2030285 23858219 ~ 23863974 (-)

Expression


Co-expression Network