selenoo2 (LOC106935628,LOC103357121,LOC107081058)


Basic Information

Item Value
gene id selenoo2
gene name LOC106935628,LOC103357121,LOC107081058
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21829011 ~ 21836596 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791163.1
TAGGCTACAATAGCTAATGACCTAACAACGCCACAGCCCTACCACTGACTGGCTGGGTCGTATTAAACTCCAGTCTTCATGGAGCCCTCCCGATGCGTGTCCACGGCCCTGAAGCGCCTACCTTTCAACAACACCGCGCTGAAAAAGCTGCCGGTGGACGACTCCGAGGAGCCCGGGTCCCGGACGGTCCCAGCGGCATGTTTCTCAAGAATCCGGACTCTCCAGCCCCTGATACGTCCGACCTTCGTGGCCCTGTCCCGGTCAGCGCTGGCTCTGCTCGACCTGAGTGAGCGGGACGTGCTGAGTAATCCCCAGGCTCCGGAGTATCTGAGCGGCTCCCGGCTGCTGCCGGGCTCCGACCCGGCTGCGCACTGTTACAGCGGGCACCAGTTCGGCCTGTTTGCGGGACAACTGGGAGATGGAGCGGTGATGTACCTGGGGGAGGTAGAGTCGGGCACCCATGGGCGATGGGAGATTCAGGTGAAAGGCGCAGGAGTCACACCTTActccagAGATGGTGATGGCAGGAAGGTGCTTCGCTCCAGCATCAGAGAGTTCCTGTGCAGCGAGGCCATGGCCGCCCTGGGGATACCCAGCACCCGTGCAGCCTCGCTAGTCACCTCCGACCTCTACGTCACCAGAGATCCACTCAACAGCGGCAGGCGCATTCCCGAGCACTGCGCAGTCGTCCTGCGTCTCGCCCCGTCCTTCATCAGATTTGGATCTTTTGAGATCTTTCTGGGCCGAGATGAGTTCTCAGGCCTGCAGGGTCCCAGTGCAGGACGGCATGACATTCGCGCTCAGCTGCTGGATTATGTCATTGAGACTTTTTATCCTTATATCCAACAGACTCATAGCAACCGGAAAGACAGGAATATGGTTTTTTTCAGAGAGGTGATGATGCGAACCGCTAAGCTAGTGGCCCAGTGGCAGTGTGTTGGTTTTTGCCATGGCGTTCTCAACACGGACAACATGAGCATCTTGGGTCTTACTCTGGACTATGGACCCTTTGGTTTCATGGACAGGTTTGATCCAGATTTCGTCTGCAACAACTCAGACAAAAGAGGGCGCTACTCGTACCAAGCCCAGCCATCTATGTGCCGCTGGAACCTGGCCCGTCTGGCCGAGGCGTTGGGCTCTGAACTGGATGCAGCCGAGGCCGGGGCTATCCTGGATCAATTCATGCCCACATACGAAGTCTTCTACCTGTGTATCATGAGGAAAAAGCTAGGCCTTGTGGGAAAAGAAGAGCCGGAGGACAGCGAACTCATATCAGACCTACTGCACCTTATGCACAACACTGGTGCAGATTTCACCAACACCTTCCGCCTGCTGAGCCGTGTCCCCTGGCCTGACGAGGGCCACGGTGGGAGGGCCACAGTGGAGCCAGTAGTAGACCTCATCCTAGAGCAGTGTGCATCTATTGAGGAGCTAAAGGTGGCTAATAAGCCAACTATGGAGAACCGTGAATTGGCGATGATTCTGTCCATGGCACAAACTAACCCAGTCATGTTTGGGATGGTGGCCGACAGGCCAGCTGTGTCCCAGCAACTGGAACTGATGGGACGGCTAAAGGAGCTGCTCGAGACAGATCAGGTTGAGCTTAAGAAAAAGCAGCGCGATGACTGGATTCGCTGGGTTAGCCAATACAGGAGGCGTTTACCCAGGGAGTGTGATGGCACAGGGGACCTGTCACTAATAAAAAAGGAGCGGCTCAGTGTGATGAACAGCACCAACCCCAGTGTTGTCCTACGCAACTACATCGCCCAGAATGCAATTCAGGCTGCAGAAAATGGAGACTTCTCTGAGGTCAACACGCTCCTCAAAGTTCTGGAGAATCCATATTCTGATGCATTTGCGGAGCCTTTGGATGGACCTAATGCATGTGCTGAAAAGGAGCAGAACAAGAGGATACTTGCCTATGACAGGAAACCTCCCGCCTGGGCACAAACGATTTGCATCACCTGATCATCGTAGAGCCTTTCAGACAGGTCAGGGAGAGAGGTTTGTTCCAACAGGTGGACCACCTAAGCCTCAGTTTTCAGAGTAAACACAATGTGGGTTGTCAGTACTGTTACTGCTGCTCCTGTTGCTACTCTCTACTTCCACCTCAGACTTTCCTTCCTGCTGCCTGAAAAAAAGATGTTATGTAACCCAGTGTGTTCCCGTGTTCATCAGTATGGTCATGTCCATGTCTGTGTGATCATGATGCTTTTATTGCAGTGTTTAAAGTGGTTGAAGAGTAAAACATAGCCCTGGATTTGACCAAATTTGACCGAATGGTCACCCCTACATGTAATCAACGAATTTGCTGATGAAGTATGACGGCTCAGATGACCAGTCACTCGGTGACCTGTCTGGGTCTGAAACACCAGAAACACACTGATATATTTGaatgattattattttgtttgtttcaaaGTTTGAAATAAAAGTGTGTTCATAAGTTGAGATGTCGGTTATAAACCTATACATACTAGGCATTAGCTCAGTATCTTAAAAGGCCCTGAAACGTCAGTTTCTTACTATAAACTATTAAAATAAGTTGAGTCCGTGTTTTCAGTGTCCCTGGTTTTTCCCTTTCCCTGGGTATTccctattatttttttttaactgcttaCCTTCGTTAATGTTTGGAGTTTGTTTGTTTCCTGCCAGGGACTACGGGCGGAAACTAACAATTTGCTACAACCTGGCACGACATCTATCAATGtttttgtgcactgtccctgttcaaataaataaattaaaatttttggactctgtaa
>XM_039791165.1
CATAGGCTACAATAGCTAATGACCTAACAACGCCACAGCCCTACCACTGACTGGCTGGGTCGTATTAAACTCCAGTCTTCATGGAGCCCTCCCGATGCGTGTCCACGGCCCTGAAGCGCCTACCTTTCAACAACACCGCGCTGAAAAAGCTGCCGGTGGACGACTCCGAGGAGCCCGGGTCCCGGACGGTCCCAGCGGCATGTTTCTCAAGAATCCGGACTCTCCAGCCCCTGATACGTCCGACCTTCGTGGCCCTGTCCCGGTCAGCGCTGGCTCTGCTCGACCTGAGTGAGCGGGACGTGCTGAGTAATCCCCAGGCTCCGGAGTATCTGAGCGGCTCCCGGCTGCTGCCGGGCTCCGACCCGGCTGCGCACTGTTACAGCGGGCACCAGTTCGGCCTGTTTGCGGGACAACTGGGAGATGGAGCGGTGATGTACCTGGGGGAGGTAGAGTCGGGCACCCATGGGCGATGGGAGATTCAGGTGAAAGGCGCAGGAGTCACACCTTActccagAGATGGTGATGGCAGGAAGGTGCTTCGCTCCAGCATCAGAGAGTTCCTGTGCAGCGAGGCCATGGCCGCCCTGGGGATACCCAGCACCCGTGCAGCCTCGCTAGTCACCTCCGACCTCTACGTCACCAGAGATCCACTCAACAGCGGCAGGCGCATTCCCGAGCACTGCGCAGTCGTCCTGCGTCTCGCCCCGTCCTTCATCAGATTTGGATCTTTTGAGATCTTTCTGGGCCGAGATGAGTTCTCAGGCCTGCAGGGTCCCAGTGCAGGACGGCATGACATTCGCGCTCAGCTGCTGGATTATGTCATTGAGACTTTTTATCCTTATATCCAACAGACTCATAGCAACCGGAAAGACAGGAATATGGTTTTTTTCAGAGAGGTGATGATGCGAACCGCTAAGCTAGTGGCCCAGTGGCAGTGTGTTGGTTTTTGCCATGGCGTTCTCAACACGGACAACATGAGCATCTTGGGTCTTACTCTGGACTATGGACCCTTTGGTTTCATGGACAGGTTTGATCCAGATTTCGTCTGCAACAACTCAGACAAAAGAGGGCGCTACTCGTACCAAGCCCAGCCATCTATGTGCCGCTGGAACCTGGCCCGTCTGGCCGAGGCGTTGGGCTCTGAACTGGATGCAGCCGAGGCCGGGGCTATCCTGGATCAATTCATGCCCACATACGAAGTCTTCTACCTGTGTATCATGAGGAAAAAGCTAGGCCTTGTGGGAAAAGAAGAGCCGGAGGACAGCGAACTCATATCAGACCTACTGCACCTTATGCACAACACTGGTGCAGATTTCACCAACACCTTCCGCCTGCTGAGCCGTGTCCCCTGGCCTGACGAGGGCCACGGTGGGAGGGCCACAGTGGAGCCAGTAGTAGACCTCATCCTAGAGCAGTGTGCATCTATTGAGGAGCTAAAGCATTTTGGGGAAAAAGCTTACCAAGACAATATTGAATTGGCGATGATTCTGTCCATGGCACAAACTAACCCAGTCATGTTTGGGATGGTGGCCGACAGGCCAGCTGTGTCCCAGCAACTGGAACTGATGGGACGGCTAAAGGAGCTGCTCGAGACAGATCAGGTTGAGCTTAAGAAAAAGCAGCGCGATGACTGGATTCGCTGGGTTAGCCAATACAGGAGGCGTTTACCCAGGGAGTGTGATGGCACAGGGGACCTGTCACTAATAAAAAAGGAGCGGCTCAGTGTGATGAACAGCACCAACCCCAGTGTTGTCCTACGCAACTACATCGCCCAGAATGCAATTCAGGCTGCAGAAAATGGAGACTTCTCTGAGGTCAACACGCTCCTCAAAGTTCTGGAGAATCCATATTCTGATGCATTTGCGGAGCCTTTGGATGGACCTAATGCATGTGCTGAAAAGGAGCAGAACAAGAGGATACTTGCCTATGACAGGAAACCTCCCGCCTGGGCACAAACGATTTGCATCACCTGA

Function

NR:

description
PREDICTED: selenoprotein O-like isoform X2

GO: NA

KEGG:

id description
K08997 SELENOO, selO; serine/tyrosine/threonine adenylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791163.1 True 2768 mRNA 0.51 9 21829011 21836594
XM_039791165.1 False 1973 mRNA 0.55 10 21829811 21836596

Neighbor

gene id symbol gene type direction distance location
LOC120553085 LOC103357120 coding downstream 1077 21816182 ~ 21827934 (-)
LOC120553490 ano4,LOC102780176 coding downstream 75740 21684210 ~ 21753271 (-)
slc38a4 slc38a4 coding downstream 257898 21518625 ~ 21571113 (-)
gas2l3 gas2l3 coding downstream 463903 21335537 ~ 21365108 (-)
med21 med21,LOC102798687 coding downstream 527755 21295513 ~ 21301256 (-)
apex1 apex1 coding upstream 54014 21890610 ~ 21894722 (-)
si:ch211-214j24.10 LOC103357125,LOC104922658 coding upstream 91643 21928239 ~ 21935396 (-)
LOC120553803 LOC103357126 coding upstream 100742 21937338 ~ 21945575 (-)
nav3 nav3 coding upstream 112140 21948736 ~ 22179107 (-)
zdhhc17 zdhhc17,LOC102798393 coding upstream 697658 22534254 ~ 22573905 (-)
LOC120553093 NA non-coding downstream 51335 21777033 ~ 21777676 (-)
G229413 NA non-coding downstream 146472 21681560 ~ 21682539 (-)
G229392 NA non-coding downstream 172849 21655902 ~ 21656162 (-)
G229390 NA non-coding downstream 186243 21642515 ~ 21642768 (-)
G229351 scaf11,LOC102797309 non-coding downstream 375859 21450463 ~ 21453152 (-)
G229527 LOC108228952,LOC107098074,LOC105922964,LOC106609550,LOC103375704 non-coding upstream 17787 21854383 ~ 21856289 (-)
G229539 NA non-coding upstream 41676 21878272 ~ 21878705 (-)
G229541 NA non-coding upstream 43308 21879904 ~ 21880220 (-)
G229546 NA non-coding upstream 75809 21912405 ~ 21947509 (-)
G229558 NA non-coding upstream 483677 22320273 ~ 22320528 (-)
LOC120553090 NA other downstream 17914 21771088 ~ 21811097 (-)
slc38a2 slc38a2 other downstream 354409 21461076 ~ 21474602 (-)
ptprz1b NA other downstream 683478 21063691 ~ 21145533 (-)
G229199 NA other downstream 870791 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 1474384 20301092 ~ 20354627 (-)
G229716 NA other upstream 1268164 23104760 ~ 23239573 (-)
glipr1a NA other upstream 1367172 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 1853923 23690519 ~ 23711804 (-)
G229907 NA other upstream 1863101 23699697 ~ 23700198 (-)
LOC120553046 NA other upstream 2021623 23858219 ~ 23863974 (-)

Expression


Co-expression Network