myf5 (myf5)


Basic Information

Item Value
gene id myf5
gene name myf5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8468661 ~ 8471034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791202.1
GGCATATAAGGGGGGCCTGGGGCAACAGACTCCTCATATCACTCAGAGgtctcctctctctcaccccACTCCTCtaccctccttccttcctttgcaCCCATCTCAACATCCATTCagacctcttttcttcagcAAACATGGACGTCTTCTCACCATCCCAGGTCTACTACGACTGTGCTTCATCTCCAGACAGCTTGGAGTTTGGCGCAGGCTTGGAGCTCGATGGCTCCGAGGAGGACGAGCATGTGAGGATCCCCGGAGCCCCCCACCAGCCGGGACACTGCCTCCAGTGGGCCTGCAAGGCCTGCAAGCGCAAGTCCAACTTTGTGGACCGCAGACGGGCCGCCACCATGCGAGAGCGCCGGCGGCTGAAGAAGGTCAACCACGCTTTCGAGGCTTTGAGGCGCTGCACCTCGGCCAACCCCAGCCAACGTCTGCCAAAGGTGGAGATCCTGCGCAACGCCATCCAGTACATCGAGAGCCTGCAGGATCTGCTACGAGAGCAGGTGGAAAACTACTACGGCCTACCTGGAGAGAGCAGCTCTGAGCCCGGGAGCCCGCTGTCCAGCTGCTCTGATGGCATGGCTGACAGCAACAGTCCAGTGTGGCACCATCTGAATGCAAACTACAGCAACGGTTATTCATATGCGAGGAACGACAGTTTAGGCGACAAGGCAGCCGGAGCCTCCAGTCTGGAGTGTCTCTCCAGCATCGTGGACCGTCTGTCCTCGGTGGAGTCCAGCTGCGGGCCGCCAGCTCTGAGAGACATGGCCACCTTCTCCCCCGGCAGCTCCGACTCGCAGCCCTGCACGCCGGAGAGCCCCGGATCCAGGCCCGTCTACCACGTCCTGTGAAGGAAACTTTGCTGTGACGTGGATATATTACGGGCAGGCACCCTGCTTTCACCACACACCAGCTGCATTTGCAACAAGAAATGAGAACTAGTGTTGTGCAAATCTGAAGAAGACTCAGCCGTATCTAAAGACCTGCGGCAAGCAGCTTTTATATTGTACATGAGATTGTaaatatgtaatgtaaatgCCCATTTATTCTATACATGCTATTATACCCAATGAGACATATTTAATTATGACAGTTAATGTAATGTTGCATTATTCCAACATGAAGTGGTATTTAagcatttttaattatttacttTACA

Function

symbol description
myf5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including muscle organ development; neural crest cell development; and striated muscle cell development. Located in nucleolus and nucleoplasm. Is expressed in several structures, including mesoderm; musculature system; myoblast; pharyngeal arch; and post-vent region. Orthologous to human MYF5 (myogenic factor 5).

NR:

description
PREDICTED: myogenic factor 5

GO: NA

KEGG:

id description
K18484 MYF5; myogenic factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791202.1 True 1162 mRNA 0.54 3 8468661 8471034

Neighbor

gene id symbol gene type direction distance location
myf6 myf6 coding upstream 4567 8462324 ~ 8464094 (+)
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding upstream 455850 7978077 ~ 8012811 (+)
tnnt2c LOC102777397 coding upstream 571178 7895545 ~ 7897483 (+)
LOC120553463 LOC103356656 coding upstream 581136 7869761 ~ 7887525 (+)
LOC120553589 parpbp,LOC102779589 coding upstream 862823 7592879 ~ 7605838 (+)
acss3 acss3 coding downstream 44554 8515588 ~ 8565355 (+)
washc3 ccdc53 coding downstream 331514 8802548 ~ 8807170 (+)
gnptab gnptab coding downstream 347536 8818570 ~ 8845025 (+)
atp6v1e1b LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460 coding downstream 447200 8918234 ~ 8926796 (+)
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding downstream 456038 8927072 ~ 8932977 (+)
G226554 NA non-coding upstream 60002 8341630 ~ 8408659 (+)
G226556 ppp1r12a non-coding upstream 109379 8356330 ~ 8359282 (+)
G226515 NA non-coding upstream 161833 8260333 ~ 8306828 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding upstream 411044 8047779 ~ 8057617 (+)
G226505 NA non-coding upstream 440000 8024361 ~ 8028661 (+)
LOC120553277 NA non-coding downstream 146780 8617814 ~ 8620495 (+)
G226638 NA non-coding downstream 398984 8870018 ~ 8870711 (+)
G226641 mybpc1 non-coding downstream 410783 8881817 ~ 8883677 (+)
G226720 NA non-coding downstream 464016 8935050 ~ 8935551 (+)
LOC120553611 NA non-coding downstream 470807 8941841 ~ 8943537 (+)
rps16 rps16,LOC103382554 other upstream 35964 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 899358 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 936584 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1042407 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1068262 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 663560 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 766192 9237226 ~ 9241349 (+)
G227121 kera other downstream 2226220 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 2261035 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 2477251 10948285 ~ 10986201 (+)

Expression


Co-expression Network