LOC120553119 (LOC104957567)


Basic Information

Item Value
gene id LOC120553119
gene name LOC104957567
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3546739 ~ 3567593 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791203.1
AGGGTCGACACACCTCGTTCTACATTGACTGAACACACCAGAACAGGTCGACATGTTGTCCATCCCAGATCTGAtcaagaagaagaaagatggAGGAGCGCTCAGTGATGAAGAGATCAAAGCCTTCATCGAAAGTGTTACAGACAAAACTATACAAGACTGTCAGACAGGGGCCATGCTGATGGCTATCTGGCAGAAGGGAATGACAGATAAGGAGATTGTGACCCTGACCAAggagatgatgtcatcaggggaAGTGATGTCATGGCCAAAAGAGTGGGCGGGGCTAGTGGTTGACAAGCACTCAACAGGAGGGGTGGGAGATAAAGTCAGTCTGGTATTAGCGCCTGCGCTAGCTGCCTGTGGCTATAAGGTGCCTATGATCAGTGGGCGGGGCTTGGGTCACACAGGAGGAACTCTGGATAAACTGGAATCAATTCCAGGATTCAACATCCAGCAATCAACAGATCAGATCAAAAACATCATGGACTCAGTGGGCTGTTGCATTGTGGGTCAGACGGAGACGTTGGTTCCTGCGGATCAAGTCCTGTACGGTATGCGGGACGTCACCAGCACAGTGAACAGCTTACCGCTAATTACTGgctcGATTATCTCAAAGAAAGGAGCCgagtctctgtctgctctggtgcTGGATGTGAAGTTTGGACGAGCTGCTCTGTATAAAGACCTGGACAGTGCTAGAGAACTAGCACAGTTATTAGTAAAGGTGGGAAACAGCCTGGGCATGCTTACGGGGGCGGCCCTCAGCTCTATGGACGGTACGATTGGTCGCTGTGTGGGCAACAGTCTGGAGGTGATCGAGTGTCTGGAGACGCTGAAGGGGAAAGGACCCGACGACCTAATGGAGTTGGTCACAACTCTGGGCGCCCTGTTGCTGAAGATGACTGGCTCGGTGTCTGACCTATCAGAGGGCAGAAAGAAGATTTCTGACtctgtgattggtggagctGCTCTGTCCAAGTTCCAGGCCATGATGGAGAAACAGGGCGTGGACAGTGAGGCTGCCCGGACGCTGAGCTCCACCGACACAGATTACTACAGCATCCTGAGAAAATCCAAGCATCAGATCACACTGGAGACGCCTGCAGAtggTGATGTGGTGGATGTCGACGGTATGATCTTAGCTGAAGTTCTCCATAAGTTGGGGGCGGGACGATCGAAGTTCGGAGAATCTGTCAATCACAGCGTAGGGGCGAAGCTGCTGGTGTCGCTGGGTCAGAAGGTCCAGAAAGgcGCCTCCTGGCTGGAGCTCCATTATGAGGATCCGGCTCCGACTGCAGACCAGATCAGTCGACTGCAGAGCGCTCTGACTCTGGGAAcacgcacacaacacaacacacagacacagactgttGTAAAAGAATTATTGTTACCTCAGTAATGTCACTTTTTAACACATAACAACAAACCGCTGCAGACTAGTGATTAATTAGTAAGTATCATCACTCCTTGGTTACCGTTGCTAACCTAACCTGTCAATGTGTCACTCACACGGTACACAATACAGTTTacaacagagctcaacagtgaccgcccactgTTTGAACGTCTCTGTTTCCGTAAGTGTTATTCCCCGTTCTGAGCTTTTATCAAATGACGATATAAAGAGTtgtaagcctggaaccgagccaaccagctacgagatgaatcgtaacaataaaacaatttattcggcacaaattaacattttgaaaCGGCAAAACAGACTTCGCTAGCCGTTTGCAGGTACAGGTACGTACTCGCCTTTATATTGTAGTGAGATCGGGAAGTTATTGTTATGCCAGTCGTAACCATCTCTCGCCACTGTACCAGTCGTAACCATCTCTCGCCATTGCACCGGGCCAGTCGTAACCATCTCTCGCCATTGCACCGGGCCAGTCGTAACCATCTCTCGCCACTGTACCGGGGCCAGTCGTAACCATCTCTCGCCACTGCACCGGGGCCAGTCGTAACCATCTCTCGCCACTGTACCGGGGCCAGTCGTAACCATCTCTCGCCACTGCACCGGGGCCAGTCGTAA
>XM_039791204.1
AGGGTCGACACACCTCGTTCTACATTGACTGAACACACCAGAACAGGTCGACATGTTGTCCATCCCAGATCTGAtcaagaagaagaaagatggAGGAGCGCTCAGTGATGAAGAGATCAAAGCCTTCATCGAAAGTGTTACAGACAAAACTATACAAGACTGTCAGACAGGGGCCATGCTGATGGCTATCTGGCAGAAGGGAATGACAGATAAGGAGATTGTGACCCTGACCAAggagatgatgtcatcaggggaAGTGATGTCATGGCCAAAAGAGTGGGCGGGGCTAGTGGTTGACAAGCACTCAACAGGAGGGGTGGGAGATAAAGTCAGTCTGGTATTAGCGCCTGCGCTAGCTGCCTGTGGCTATAAGATCAAAAACATCATGGACTCAGTGGGCTGTTGCATTGTGGGTCAGACGGAGACGTTGGTTCCTGCGGATCAAGTCCTGTACGGTATGCGGGACGTCACCAGCACAGTGAACAGCTTACCGCTAATTACTGgctcGATTATCTCAAAGAAAGGAGCCgagtctctgtctgctctggtgcTGGATGTGAAGTTTGGACGAGCTGCTCTGTATAAAGACCTGGACAGTGCTAGAGAACTAGCACAGTTATTAGTAAAGGTGGGAAACAGCCTGGGCATGCTTACGGGGGCGGCCCTCAGCTCTATGGACGGTACGATTGGTCGCTGTGTGGGCAACAGTCTGGAGGTGATCGAGTGTCTGGAGACGCTGAAGGGGAAAGGACCCGACGACCTAATGGAGTTGGTCACAACTCTGGGCGCCCTGTTGCTGAAGATGACTGGCTCGGTGTCTGACCTATCAGAGGGCAGAAAGAAGATTTCTGACtctgtgattggtggagctGCTCTGTCCAAGTTCCAGGCCATGATGGAGAAACAGGGCGTGGACAGTGAGGCTGCCCGGACGCTGAGCTCCACCGACACAGATTACTACAGCATCCTGAGAAAATCCAAGCATCAGATCACACTGGAGACGCCTGCAGAtggTGATGTGGTGGATGTCGACGGTATGATCTTAGCTGAAGTTCTCCATAAGTTGGGGGCGGGACGATCGAAGTTCGGAGAATCTGTCAATCACAGCGTAGGGGCGAAGCTGCTGGTGTCGCTGGGTCAGAAGGTCCAGAAAGgcGCCTCCTGGCTGGAGCTCCATTATGAGGATCCGGCTCCGACTGCAGACCAGATCAGTCGACTGCAGAGCGCTCTGACTCTGGGAAcacgcacacaacacaacacacagacacagactgttGTAAAAGAATTATTGTTACCTCAGTAATGTCACTTTTTAACACATAACAACAAACCGCTGCAGACTAGTGATTAATTAGTAAGTATCATCACTCCTTGGTTACCGTTGCTAACCTAACCTGTCAATGTGTCACTCACACGGTACACAATACAGTTTacaacagagctcaacagtgaccgcccactgTTTGAACGTCTCTGTTTCCGTAAGTGTTATTCCCCGTTCTGAGCTTTTATCAAATGACGATATAAAGAGTtgtaagcctggaaccgagccaaccagctacgagatgaatcgtaacaataaaacaatttattcggcacaaattaacattttgaaaCGGCAAAACAGACTTCGCTAGCCGTTTGCAGGTACAGGTACGTACTCGCCTTTATATTGTAGTGAGATCGGGAAGTTATTGTTATGCCAGTCGTAACCATCTCTCGCCACTGTACCAGTCGTAACCATCTCTCGCCATTGCACCGGGCCAGTCGTAACCATCTCTCGCCATTGCACCGGGCCAGTCGTAACCATCTCTCGCCACTGTACCGGGGCCAGTCGTAACCATCTCTCGCCACTGCACCGGGGCCAGTCGTAACCATCTCTCGCCACTGTACCGGGGCCAGTCGTAACCATCTCTCGCCACTGCACCGGGGCCAGTCGTAA

Function

NR:

description
PREDICTED: thymidine phosphorylase-like, partial

GO:

id name namespace
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006206 pyrimidine nucleobase metabolic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0072527 pyrimidine-containing compound metabolic process biological_process
GO:0016763 transferase activity, transferring pentosyl groups molecular_function
GO:0016154 pyrimidine-nucleoside phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00758 deoA, TYMP; thymidine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791203.1 True 2041 mRNA 0.51 10 3546739 3567593
XM_039791204.1 False 1942 mRNA 0.51 9 3546739 3567593

Neighbor

gene id symbol gene type direction distance location
cct2 cct2 coding upstream 198753 3328950 ~ 3347986 (+)
LOC120553725 NA coding upstream 243989 3260679 ~ 3302750 (+)
LOC120553565 NA coding upstream 429099 3110841 ~ 3117640 (+)
trnat-ugu_32 NA coding upstream 614010 2932657 ~ 2932729 (+)
trnat-ugu_31 NA coding upstream 622544 2924123 ~ 2924195 (+)
cand1 cand1 coding downstream 168889 3736482 ~ 3800595 (+)
mdm1 NA coding downstream 274403 3841996 ~ 3873319 (+)
il22 NA coding downstream 314580 3882173 ~ 3888180 (+)
LOC120553047 NA coding downstream 431141 3998734 ~ 4019042 (+)
LOC120553050 NA coding downstream 526067 4093660 ~ 4107645 (+)
G225549 NA non-coding upstream 125782 3420483 ~ 3420957 (+)
G225550 NA non-coding upstream 183810 3353454 ~ 3362929 (+)
G225542 NA non-coding upstream 193929 3352531 ~ 3352810 (+)
G225489 NA non-coding upstream 238695 3307014 ~ 3308044 (+)
G225485 NA non-coding upstream 259402 3274728 ~ 3287337 (+)
G225570 NA non-coding downstream 1929 3569522 ~ 3627258 (+)
G225571 lsm8,LOC106596712,LOC106589648 non-coding downstream 3175 3570768 ~ 3574316 (+)
G225575 NA non-coding downstream 7457 3575050 ~ 3576021 (+)
G225566 NA non-coding downstream 10026 3577619 ~ 3616179 (+)
G225580 NA non-coding downstream 39236 3606829 ~ 3713336 (+)
trnat-ugu_40 NA other upstream 12067 3534600 ~ 3534672 (+)
trnat-ugu_39 NA other upstream 13078 3533589 ~ 3533661 (+)
trnat-ugu_38 NA other upstream 14659 3532008 ~ 3532080 (+)
trnat-ugu_37 NA other upstream 18178 3528489 ~ 3528561 (+)
trnat-ugu_36 NA other upstream 25234 3521432 ~ 3521505 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other downstream 246888 3814481 ~ 3841174 (+)
LOC120553793 NA other downstream 368081 3935674 ~ 3938954 (+)
G225894 NA other downstream 1089851 4657444 ~ 4657969 (+)
abcc9 abcc9,LOC107387088 other downstream 1713665 5281258 ~ 5373637 (+)
prkcq prkcq,LOC102789446 other downstream 3092927 6660520 ~ 6686639 (+)

Expression


Co-expression Network