hcfc2 (hcfc2)


Basic Information

Item Value
gene id hcfc2
gene name hcfc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20272526 ~ 20286587 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791213.1
CACAGGAATCTCCCCACAGTTTTGGATGGTCTGTAACATAACATGACATGTCAGACAGATCTGTATCAACCATTTCTGCACTATGGACTATCCTGTTTATCTTATGACTATTAATAATGTGAGTTCAAAGGCCATCTCAACATCTGATGTGTTGATATTTTACAATTGTCAGGAAAACATAGCATCTTAAAATGGGTACTCAATATAGTATTCGACTTTCATAAAGTTAGGGGACTGCCAAGAGatagattaaaaatataatGGTCTATGCAGCAGAGTTACCCCAACTTTGAGTCCCCTCAAGCACCATCTAATATTCCTCTTTTGTAAGGCTTTGCTCGGTAAATGTCCTCGTATCCAGTTTGTAACACCGTCTGCCTAAATTTGTATTTCCCTAGCCCAGGCCGAGATAACTCTTTTGACATCATCAGCGTTATTTATTAGAATCAGCAAatagttctctctctcttttccagtTATTCATTCACCAAACTCATCTGTAATTCCCTTACAAAGTTAACATTAAATTCCAATCAAAACCAGAGGGAAAAGGCCTAGTGTGAAGAAAagtaagtagtagtagtagaagtaggAAAAAAGCAAGTAACAATAAGCTGGCTGACTATTGGACACATCAACCTAAACAGCCCACATCACATTATAGCATCCAAGtggtttttgtgatcattgtgAGGTACCAGATATATGCaggaaatactgtatgtatcagagagagagaggacatgtTGGAAGAAATTAAACGATTAGGGCTAACAGGAGCAAAAGTAAAGAACATAGGCTACTGTAGTGTGGTAACAGTGGACAAGGCAGAAGATGCTCAGTCAGCTTCCTAATGAAAACAGCACTGATGAGGAAAATCTGACATAGTGGACACTTTAGGAGTTAACTAATTCCAGAAGATGGCAGTAGTGCAACATTAAAGATGCAATCTGCCTTTAAATcccgaagaagaagaagaagaagaagaagaagaagaagaaataataatTCCCTTACATTCCTTTTGATACCCGGTAAACGTAAACGAGGCAGAGTGAGACGTCCTGCCTTGTTTCCACCTCTCTGGTTGAACTTCCTGATTCCTCCTTCGCCCCGCCCTCGTCTTTGAAACGACAACAGCGCCAAACTTCAGGGTCCCAAACGGGAAAATGACTACTGGTGCCAAGGAGCCGCAATGGAGAAAGGTTCATTCCGCCACGGGAGTGATTCCGCGGTCCAGACACGGACACCGAGCAGTTGCCATACGGGAGCTAATTGTTGTATTCGGCGGTGGAAATGAAGGGATAGCGGAGGACCTTCATGTTTACAACACTGTCTCAAGGCAGTGGTTTCTGCCTGCGGTGAGGGGTGACATCCCACCCGGCTGTGCTTCCCATGGCTTCGTCTGTGAAGGCACTCGAATACTGGTCTTTGGTGGCATGGTTGAGTTTGGGAAATACACCAACAGCCTTTATGAACTTCAGGCTAGTCGCTGGCTGTGGAAGAAGCTGAAGCCCAGAGCACCCAGGAATGGCTTGCCTCCCTGCCCTCGGATTGGACACAGCTTCACTCTTGTGGGTAACAAGTGTTACCTGTTTGGAGGGCTGGCCAATGATAGTGAAGACCCCAACGGCAACGTACCAAGATACATGTGCGACTTCTATGAGCTGGAGCTGCAGTCGTCATCGGGGGCAAGAGGCTGGAGCATCCCAGAGACGAAGGGTGGTGGTCCCTCAGCACGGGAGTCCCACACCTCGGTTGCCTACACTGGCCTCGGCTCCCCAAAGCTCTACATCTTTGGAGGGATGCAAGGATGCCGGCTAGATGACCTCTGGCAGCTTGACCTTGACACAATGGTTTGGTCAACGCCTGAAACCAGGGGTTTCAGGCCACTTTCCAGAAGCCTTCACTCTGCCAGTGTCATTGGAAACAAGATGTATGTTTTTGGTGGCTGGATTCCTGTACCAGAGTCAGACGAACACAATGCTTTAGGAACTGAATGGATCTGCAGTGACTCCCTAACTGTACTCAACTTAGACACTATGATCTGGCAGAACCTGGGCCCAGAGCAGCAGGGCAATATCGAGTCCCAGCTGCAGATCCAGGGACCCCAGAGTGAGGATCCGTACGCCTGTAGGCCCAGAGCCAGGGCCGGCCACTGTGCTGCCACTGTCGGGTCCAGGCTTTACATTTGGAGCGGCCGTGACGGGTTCCGTAAGAGCTGGAACTACCAGGTCTGCTGCAAGGACCTCTGGTACCTGGAGACAGATCGACCAGCCGCCCCAGAGGCAGTGTTACTCATCAAATCCACAGTCAGCATGCTTCATGTGGCGTGGCGCCCCCTGGCGGCAGCAGACTGCTACATCCTTCAGATCCAGCCTGCACCTCCACCAGCCAAACCAGTCAGTCCAACTGGACTAGGTGGACTGGACGGGAACGGTAAAGACACTGCAGGTGTCCAGTCTCTTCAGCCTCCAACTGGAGGAACCACTAATAAAGAAGCGAAAGCATCAGCTCAGGATGCTTCAGCACAGCAGGAAACTACAGCGAAACTGTTCAGTGGCTCAGCAGAGACCAAAGCACAAGGAGGGAGGAGTGCTGGGAGGGAGACGGAGAAGGACCCTGACACAAAACGCTGCGGTGCTGGACAGGAGACGGCAGCAGCAGAGGTCGGAAGCTCAGCTCAGCGCCAGCCAGAGGAACAACCTGTTTCAGCTGACAAGAAAACCGATTTCTACGCCCCTACACATCAGCAGAATCCAGATGAAGCCGTGTGGTTTGACGTTGGTGTGTTCAAAGCACTCTTCTCTGAGGTCAGCCACTACTTTCTACCCGCTGACAGCGAACAGGCGTCTGCAGCCATCAGCAGCCGACCGTCGCACACTAAAGAGCCCTTCCTCCAGAGGAATCTTGACTACCAAAGCAGAGAGAAGCAGGAGCTGGCTCCAGGTCAGACCTACAGGTTCAGAGTTGCAGGCATCAACTACTTTGGCCAGGGAGACTTCAGCCCAGTCAGCGAGTTCAAGACATGCCAACCTGGTTTCCCTGGAGCGCCATCTGCCGTCAAAATTACCAAGGCCAACGATTCGGTCAACATTACATGGGAGGCTCCCCCCTCTCCATCGGGCCGGATCCTCGAGTATTCCATGTACATGGCCGTGAAAAAGAGTCGCTCCACCAGCTCGGAGCGTCCAGGTCAGATGTCCTTCATCAGAATCTACCGCGGCACCAAGATGTCCTGCTCGGTCAGCTCCACCCACCTGGATAACGCCCAGATCGACTGCTCGGCCTCCAACCGGCCAGCTGTGGTCTTCCGCATCGCTGCTAAGAATGAGCAGGGCTACGGTCCGGCCACGCAGATCCGCTGGATTCAAGATCCTAGTAAATTGCGAACGTCTGCATCCAAAGCCGACAGCAATGCTGAGGCTGACCAGGATGCTGCTGACAGCTCCagctaaaaaaaatgttttggacCAATGGCACCGTGTTTTGGAAAGACAGTATGTGCTCTCAGGAAGGTGGCAATGTTTGCCAATCAGATGTAAATTTGCTAGatatttttgttaatttattttttttatgtaattaatTATTCCCTTGTAAATAGATTTTCATAGGAAGATTGACCACTTGGCTACTTTAGTTAAACCAATGTTTTGTTAAGTAATAGGATGTAGACTAAACTACAAGtatgatttaagatttaaaaaaatcttcaaaGGTTGGAGGTGCCTTAGAGTTTATTGCAACAGCCACTGATGCtgctttatacagtatgttgtggTTTTgcatgaaactttttttttagcgTGGACCACTTTTACAATCCTATTGACACAGTGAGGTTATACAATACCAGTTATCTTTACAGTAGAAAtgttattgttatatatattatagatcATTTACTGTGATTCAGGTTTGGTTTAAGATCTTTGTTAATGTGTTTTCTCACTGTACACACAACCATGTTGACTACAAACATGTTTACTATCCGTTACATTTCTGCATcacatttgttgttttatgattattttattatcaCTACCACCAAATTGTTCAGATTGTTTACAAGttacaacttttctttttttttaaatatctctcataaaaaaaaaaaaataaataaaaaaaatcaatccaaATCAAAAAATGGATGCTGACTGCAACCAAAGAGCAGAGCACTACTAATGTTTCTGATATGAATTAAAGGTATCAAAAATGCCCCAGATATTACAGGAAGAGATGTGCGTGTTAACATTATTATTGTCTCTGGTTTGACCCGCTCACCATTTAGTGGGCAAGAAGTGTGATTATTATCTTCCCTATCCTCCTCCATCATGTCTGGACTCTGGATTATTACAGGTCTTTTTAACCAGTGTGGTGAAGGAACATATGGGGGGATTACTATCCAGACCTCAAATCAATGAGACCAAGTGCTGCGTCTCTTCATGgacttaataaaaaaagattccGTGGCTGAAGAAGATTTGGTCAGGATAGGCATACAGAGTATTGTTTAGATTAAACATTATGCATTTGATCAAGCTGAAGACTCATTATTTCCCTTGAATAACAATTAAGATAAGAGTCAA
>XM_039791214.1
ACAGGAATCTCCCCACAGTTTTGGATGGTCTGTAACATAACATGACATGTCAGACAGATCTGTATCAACCATTTCTGCACTATGGACTATCCTGTTTATCTTATGACTATTAATAATGTGAGTTCAAAGGCCATCTCAACATCTGATGTGTTGATATTTTACAATTGTCAGGAAAACATAGCATCTTAAAATGGGTACTCAATATAGTATTCGACTTTCATAAAGTTAGGGGACTGCCAAGAGatagattaaaaatataatGGTCTATGCAGCAGAGTTACCCCAACTTTGAGTCCCCTCAAGCACCATCTAATATTCCTCTTTTGTAAGGCTTTGCTCGGTAAATGTCCTCGTATCCAGTTTGTAACACCGTCTGCCTAAATTTGTATTTCCCTAGCCCAGGCCGAGATAACTCTTTTGACATCATCAGCGTTATTTATTAGAATCAGCAAatagttctctctctcttttccagtTATTCATTCACCAAACTCATCTGTAATTCCCTTACAAAGTTAACATTAAATTCCAATCAAAACCAGAGGGAAAAGGCCTAGTGTGAAGAAAagtaagtagtagtagtagaagtaggAAAAAAGCAAGTAACAATAAGCTGGCTGACTATTGGACACATCAACCTAAACAGCCCACATCACATTATAGCATCCAAGtggtttttgtgatcattgtgAGGTACCAGATATATGCaggaaatactgtatgtatcagagagagagaggacatgtTGGAAGAAATTAAACGATTAGGGCTAACAGGAGCAAAAGTAAAGAACATAGGCTACTGTAGTGTGGTAACAGTGGACAAGGCAGAAGATGCTCAGTCAGCTTCCTAATGAAAACAGCACTGATGAGGAAAATCTGACATAGTGGACACTTTAGGAGTTAACTAATTCCAGAAGATGGCAGTAGTGCAACATTAAAGATGCAATCTGCCTTTAAATcccgaagaagaagaagaagaagaagaagaagaagaagaaataataatTCCCTTACATTCCTTTTGATACCCGGTAAACGTAAACGAGGCAGAGTGAGACGTCCTGCCTTGTTTCCACCTCTCTGGTTGAACTTCCTGATTCCTCCTTCGCCCCGCCCTCGTCTTTGAAACGACAACAGCGCCAAACTTCAGGGTCCCAAACGGGAAAATGACTACTGGTGCCAAGGAGCCGCAATGGAGAAAGGTTCATTCCGCCACGGGAGTGATTCCGCGGTCCAGACACGGACACCGAGCAGTTGCCATACGGGAGCTAATTGTTGTATTCGGCGGTGGAAATGAAGGGATAGCGGAGGACCTTCATGTTTACAACACTGTCTCAAGGCAGTGGTTTCTGCCTGCGGTGAGGGGTGACATCCCACCCGGCTGTGCTTCCCATGGCTTCGTCTGTGAAGGCACTCGAATACTGGTCTTTGGTGGCATGGTTGAGTTTGGGAAATACACCAACAGCCTTTATGAACTTCAGGCTAGTCGCTGGCTGTGGAAGAAGCTGAAGCCCAGAGCACCCAGGAATGGCTTGCCTCCCTGCCCTCGGATTGGACACAGCTTCACTCTTGTGGGTAACAAGTGTTACCTGTTTGGAGGGCTGGCCAATGATAGTGAAGACCCCAACGGCAACGTACCAAGATACATGTGCGACTTCTATGAGCTGGAGCTGCAGTCGTCATCGGGGGCAAGAGGCTGGAGCATCCCAGAGACGAAGGGTGGTGGTCCCTCAGCACGGGAGTCCCACACCTCGGTTGCCTACACTGGCCTCGGCTCCCCAAAGCTCTACATCTTTGGAGGGATGCAAGGATGCCGGCTAGATGACCTCTGGCAGCTTGACCTTGACACAATGGTTTGGTCAACGCCTGAAACCAGGGGTTTCAGGCCACTTTCCAGAAGCCTTCACTCTGCCAGTGTCATTGGAAACAAGATGTATGTTTTTGGTGGCTGGATTCCTGTACCAGAGTCAGACGAACACAATGCTTTAGGAACTGAATGGATCTGCAGTGACTCCCTAACTGTACTCAACTTAGACACTATGATCTGGCAGAACCTGGGCCCAGAGCAGCAGGGCAATATCGAGTCCCAGCTGCAGATCCAGGGACCCCAGAGTGAGGATCCGTACGCCTGTAGGCCCAGAGCCAGGGCCGGCCACTGTGCTGCCACTGTCGGGTCCAGGCTTTACATTTGGAGCGGCCGTGACGGGTTCCGTAAGAGCTGGAACTACCAGGTCTGCTGCAAGGACCTCTGGTACCTGGAGACAGATCGACCAGCCGCCCCAGAGGCAGTGTTACTCATCAAATCCACAGTCAGCATGCTTCATGTGGCGTGGCGCCCCCTGGCGGCAGCAGACTGCTACATCCTTCAGATCCAGCCTGCACCTCCACCAGCCAAACCAGTCAGTCCAACTGGACTAGGTGGACTGGACGGGAACGGTAAAGACACTGCAGGTGTCCAGTCTCTTCAGCCTCCAACTGGAGGAACCACTAATAAAGAAGCGAAAGCATCAGCTCAGGATGCTTCAGCACAGCAGGAAACTACAGCGAAACTGTTCAGTGGCTCAGCAGAGACCAAAGCACAAGGAGGGAGGAGTGCTGGGAGGGAGACGGAGAAGGACCCTGACACAAAACGCTGCGGTGCTGGACAGGAGACGGCAGCAGCAGAGGTCGGAAGCTCAGCTCAGCGCCAGCCAGAGGAACAACCTGTTTCAGCTGACAAGAAAACCGATTTCTACGCCCCTACACATCAGAATCCAGATGAAGCCGTGTGGTTTGACGTTGGTGTGTTCAAAGCACTCTTCTCTGAGGTCAGCCACTACTTTCTACCCGCTGACAGCGAACAGGCGTCTGCAGCCATCAGCAGCCGACCGTCGCACACTAAAGAGCCCTTCCTCCAGAGGAATCTTGACTACCAAAGCAGAGAGAAGCAGGAGCTGGCTCCAGGTCAGACCTACAGGTTCAGAGTTGCAGGCATCAACTACTTTGGCCAGGGAGACTTCAGCCCAGTCAGCGAGTTCAAGACATGCCAACCTGGTTTCCCTGGAGCGCCATCTGCCGTCAAAATTACCAAGGCCAACGATTCGGTCAACATTACATGGGAGGCTCCCCCCTCTCCATCGGGCCGGATCCTCGAGTATTCCATGTACATGGCCGTGAAAAAGAGTCGCTCCACCAGCTCGGAGCGTCCAGGTCAGATGTCCTTCATCAGAATCTACCGCGGCACCAAGATGTCCTGCTCGGTCAGCTCCACCCACCTGGATAACGCCCAGATCGACTGCTCGGCCTCCAACCGGCCAGCTGTGGTCTTCCGCATCGCTGCTAAGAATGAGCAGGGCTACGGTCCGGCCACGCAGATCCGCTGGATTCAAGATCCTAGTAAATTGCGAACGTCTGCATCCAAAGCCGACAGCAATGCTGAGGCTGACCAGGATGCTGCTGACAGCTCCagctaaaaaaaatgttttggacCAATGGCACCGTGTTTTGGAAAGACAGTATGTGCTCTCAGGAAGGTGGCAATGTTTGCCAATCAGATGTAAATTTGCTAGatatttttgttaatttattttttttatgtaattaatTATTCCCTTGTAAATAGATTTTCATAGGAAGATTGACCACTTGGCTACTTTAGTTAAACCAATGTTTTGTTAAGTAATAGGATGTAGACTAAACTACAAGtatgatttaagatttaaaaaaatcttcaaaGGTTGGAGGTGCCTTAGAGTTTATTGCAACAGCCACTGATGCtgctttatacagtatgttgtggTTTTgcatgaaactttttttttagcgTGGACCACTTTTACAATCCTATTGACACAGTGAGGTTATACAATACCAGTTATCTTTACAGTAGAAAtgttattgttatatatattatagatcATTTACTGTGATTCAGGTTTGGTTTAAGATCTTTGTTAATGTGTTTTCTCACTGTACACACAACCATGTTGACTACAAACATGTTTACTATCCGTTACATTTCTGCATcacatttgttgttttatgattattttattatcaCTACCACCAAATTGTTCAGATTGTTTACAAGttacaacttttctttttttttaaatatctctcataaaaaaaaaaaaataaataaaaaaaatcaatccaaATCAAAAAATGGATGCTGACTGCAACCAAAGAGCAGAGCACTACTAATGTTTCTGATATGAATTAAAGGTATCAAAAATGCCCCAGATATTACAGGAAGAGATGTGCGTGTTAACATTATTATTGTCTCTGGTTTGACCCGCTCACCATTTAGTGGGCAAGAAGTGTGATTATTATCTTCCCTATCCTCCTCCATCATGTCTGGACTCTGGATTATTACAGGTCTTTTTAACCAGTGTGGTGAAGGAACATATGGGGGGATTACTATCCAGACCTCAAATCAATGAGACCAAGTGCTGCGTCTCTTCATGgacttaataaaaaaagattccGTGGCTGAAGAAGATTTGGTCAGGATAGGCATACAGAGTATTGTTTAGATTAAACATTATGCATTTGATCAAGCTGAAGACTCATTATTTCCCTTGAATAACAATTAAGATAAGAGTCAA

Function

symbol description
hcfc2 Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Orthologous to human HCFC2 (host cell factor C2).

NR:

description
PREDICTED: host cell factor 2

GO: NA

KEGG:

id description
K14966 HCFC; host cell factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791213.1 True 4595 mRNA 0.46 17 20272526 20286587
XM_039791214.1 False 4591 mRNA 0.46 17 20272526 20286586

Neighbor

gene id symbol gene type direction distance location
cep83 cep83 coding downstream 382 20260025 ~ 20272144 (-)
LOC120553419 timp3,LOC103152565 coding downstream 272004 19983479 ~ 20000522 (-)
LOC120553212 fam19a2,LOC103364248 coding downstream 465771 19733066 ~ 19806755 (-)
lrig3 lrig3 coding downstream 703469 19546626 ~ 19569057 (-)
rpap3 NA coding downstream 768220 19495419 ~ 19504306 (-)
mcm10 mcm10,LOC102783079 coding upstream 107479 20394066 ~ 20409676 (-)
optn optn coding upstream 123608 20410195 ~ 20430496 (-)
camk1da camk1d coding upstream 169088 20455675 ~ 20530744 (-)
LOC120553073 NA coding upstream 250469 20537056 ~ 20544945 (-)
cdc123 cdc123 coding upstream 263447 20550034 ~ 20564985 (-)
G228946 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC106945279 non-coding downstream 366583 19852964 ~ 19905943 (-)
G228947 LOC103152567,LOC106913527,LOC106945279,LOC106922717,LOC102300237 non-coding downstream 390447 19877097 ~ 19882079 (-)
G228949 NA non-coding downstream 413663 19858103 ~ 19858863 (-)
LOC120553214 NA non-coding downstream 554114 19717222 ~ 19718412 (-)
G228885 NA non-coding downstream 703167 19550617 ~ 19569359 (-)
G229062 NA non-coding upstream 69049 20355636 ~ 20357563 (-)
G229071 NA non-coding upstream 95878 20382465 ~ 20391508 (-)
G229076 ccdc3,LOC102778083 non-coding upstream 147568 20434155 ~ 20437536 (-)
G229079 NA non-coding upstream 155733 20442320 ~ 20450128 (-)
G229095 NA non-coding upstream 248698 20535285 ~ 20535597 (-)
rerg rerg other downstream 150133 20066895 ~ 20122393 (-)
etv6 etv6 other downstream 433176 19806814 ~ 19839350 (-)
G228934 fam19a2,LOC103364248 other downstream 465428 19733102 ~ 19807098 (-)
sox5 sox5 other downstream 1002190 19028609 ~ 19270336 (-)
LOC120553633 slc2a13,LOC103369283 other downstream 1449436 18738396 ~ 18823090 (-)
cdk17 LOC104930593 other upstream 14505 20301092 ~ 20354627 (-)
G229199 NA other upstream 671070 20957657 ~ 20958220 (-)
ptprz1b NA other upstream 777104 21063691 ~ 21145533 (-)
slc38a2 slc38a2 other upstream 1174489 21461076 ~ 21474602 (-)
LOC120553090 NA other upstream 1484501 21771088 ~ 21811097 (-)

Expression


Co-expression Network