depdc4 (depdc4)



Basic Information


Item Value
gene id depdc4
gene name depdc4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10638588 ~ 10643771 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039791221.1
ATGGCGGTTAATTTGACTCCGCGTTTTAGAAGGTTGAACAGCCAAACGAGGAGTTTTCGTGAAAATATACAGCATGGTTTCTCGGGGCCCTTCGGTGCCACCCAGCTGTGGCACAACATCATCCAGGCCCTGCAAACCCAGGTGGAGGTGCGTCGCTGTAGAAGGCATCTACGTGTTCATGCCGAATGTTTCACAGGCTCAGACGCTGTGGATGCCGTCCTCAGTTATTTGATGCAGAATGTGGTGTTTTGCACAAGTGAAGTGTCTCGCCTCAAAGCTGCTCGACTCTGCCAGGCTCTGATGGAGGCCAAGGTGTTTGAACCAGTGGGTACCAAGCTGTTTTGCAAAGACAAAGAAGTGACCTTTGAGGACAGCAGCTGCAGCCTTTACCGTTTCCTGGAATATAAAGTGTTAGCCAATTCTGCCATGAAGGAGTCTGATTGCCATAGTGACACAGAAAACATGCCAGCAGAGGAACAGGGGctaaagaggaagaagagctcCAGGAGGCTGAATGAACTGAGGACGATCTCTAATCCTCTTGCTGTTGGACCATCAGACAGGAGGGTTGAGAGGCTGCTGAGGACCATCAACCTGCGACCAACCTTGTCTCCATCTTTAAACGCTACCCCCACTACTTCTGCCTTTCTGTCCAAAACTGTGGTGGCTGAGGTTTGGAAGCAGCAGACACTACTGCAGCTGCTGCAGATCGTAGAGCTGCCAATGCTGGACTGCATCCTGACCTCTCCTGCCAGGGTTCAGCTCAGTGCCTGCAGAGCTCCTCTGGCCACCCAGGACCTGGTTATATCTAACACATGTCTGGAGAGAGAGCTGCCCAACGCCCTAAATCTGCCCCAgttggaTGGGTGGCTGTCGGCAGCGGCAGACTGCTTGGAGCTCTTTCCCGACCAGCTGATCGTGGTTGCAGGGGAACAGCTCAGCCAACAAGGTGGCAATGCCTTTTCAGAAGATGACCAGGCAGAACAGATGGCAAGCCAAAAGAGACTGCTCTTTGACACCATTGCCAAGTACTACAGTGGACAGGAAaaagctccgctgctctcaGGACGCTACCTTGACATACATGCTGCAATTCTGAATTTGCTGGaTGAAGGGAAGTTGCAGGATGCCATCAAAGCATCTCAGTTGTGTTTTCGACTGCTGGAGACAAGTGTGAGAGATGAACTCAGGAGACTACTGGCCTTTATGGGCACAGCAGCTCGCCCAGATGCTTGCCGTCTTCAAAAACAGATTGATAACAGGGCCTTGGTCAGCCGCACTTTTCAGAGAGCAATTGTCCAGAATCACGAACTGACGCGATCCCAAAGTGAAACCCTGGTGCTGTTTCTCATGGACAAATGCACTGAGCTCTTCAAGACTCCTATGTCCCTTATTGAAGCTGTGAGGAGAACACTGAGGACTATGCAGCAGGGAAAAGACCCTGACTCAATTGCCACGTTCACCTTCTGCCAGCAGGTGACGCCACAGGAGTATGAGGATCAGCGAGAGGCCACCACCCTGGAGAGCCTCAAACAGCTTCTTCATGACATTTCCTCCAGCAAAACCATACCTGtcaaggagaggaggaggctgCTCAAAGAGTTTGAAAAACATCACCCCGTGGTTTTCATCCAGCATTTATCCAGCACCTTCTGAAAACACACAACTGAAGGGTTATTGTACCACTGAAAAGCTAGTTTGCAGTGGTACAGCGCTTACACTGAAGAATGATAATTTAATGCACATCATGGGTAAAATTTTAAGGATAGACACCTACAGCATGATCGAATGGCTTAAAATTGCTTTAAGTCACAAGATGCCTACAATAGTTGTTTTATTTGTTGATATATTATTAAGTCTGTCTTGTTACATCCCTGTAGCATTGGATGCATTGTCTATCTGATCGACATTTCATTTTGATGAAGCATTTTGAGATACAACTCTGCCCAAGTCATAGGTTTGGATGGTTTTGCACTAGTTCATTAACAATGAAATAGCAATTCATCTATGATATCTGGTGCCTAAACGTGTGTAGACTGTGAGCCGTGGTGGCTTCAGCTGTTGGTAGCGGTTGGCATTTTGTGTTAAGTGAggacacatttttttattttacattaatgaCAATTATTTGATGTTGAAGAGAtgaataatgttttaaaagggCTTTTGTGCACTAGATTGTCCTAGCATTGCTGTGGAATACAGTATATGCAAAGTAAAAGGGATTACTGAAAAAACTACTCTTGAGTTTGATCAGCCATTTAGTCAGCTGTTTTGAGGCTGCAATTGGTAAACAGCTTGTGCACTAATTGATGTACTTCTTGGTCCAGGTATTGATACTGTATTTGGATAAACCTATGTGTTCATTAAGATCTATTTAAGCTGATTTGAGCTTTGGTAATGGAAATGTGGTTTGCAGAAGTAATTCTGTGCACTTTGATCAGGCATTAATATTTCTACATGTCAAATGAAGAACAACAATATTATGGCagccttttttgttttactgaagCATACTCTAGTATGGTTAAGGAAAAATACTGGTAAACGCAACACTAATGTAGCTGAATAAAGTTTAATTCTAACTTCATTCTGTTAGAGATGAAGACATTTTTCTCTGATTTGTAAAATTAAGACTAATGAAATGAAAGCAGTAAGGGTACAATAATGTATTAGGCTAACAATAGCTCAGGTTAATAGCATTATTTTTAAGGGTTTTTAAGCTTGTTTTTAGTGCCATATCTTGGTCAAATGTCTTAATTGTAACTTTTTAGGATTTTACTTGAAAAATGGACATGATTCCTTTTACGAAAGATGTGATAATAACTTAATGTTTTACGCTACTAATTTAATCTTTGGTTAAGCATAATGCCTCAGTTGGATTGTATTATTTTACTTTGTGAAGCCATGGCCATGTAAAAGTAATTTACAGTCAAATCTCATTTAAGTCAGCATCTTTTGTTCTTTACGTACACTAAAATCATGTTAGATTGCACTTTATGATGCTGAAACGTCTAATAAAGGTTTCATTCAAACAAGA

Function


symbol description
depdc4 Predicted to be involved in intracellular signal transduction.

NR:

description
PREDICTED: DEP domain-containing protein 4

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039791221.1 True 3040 mRNA 0.43 9 10638588 10643771

Neighbor


gene id symbol gene type direction distance location
anks1b anks1b coding upstream 116351 10288477 ~ 10522237 (+)
uhrf1bp1l NA coding upstream 354488 10249758 ~ 10284100 (+)
LOC120553694 ikbip coding upstream 397083 10235016 ~ 10241505 (+)
arfgap3 arfgap3 coding upstream 403932 10226629 ~ 10234656 (+)
pacsin2 pacsin2 coding upstream 412686 10200774 ~ 10225902 (+)
scyl2 NA coding downstream 4550 10648321 ~ 10659011 (+)
si:dkeyp-38g8.5 NA coding downstream 28277 10672048 ~ 10674051 (+)
LOC120553009 NA coding downstream 375455 11019226 ~ 11023758 (+)
lrrc4.1 LOC104918788,LOC103365345,LOC100694050 coding downstream 718992 11362763 ~ 11367955 (+)
pax4 NA coding downstream 809689 11453460 ~ 11456592 (+)
G227108 NA non-coding upstream 8376 10628808 ~ 10630212 (+)
G227107 tcp11l2,LOC102777109 non-coding upstream 10606 10625446 ~ 10627982 (+)
G227088 NA non-coding upstream 99899 10538196 ~ 10538689 (+)
LOC120553125 NA non-coding upstream 701995 9934175 ~ 9936593 (+)
G226930 LOC104947167 non-coding upstream 770503 9867575 ~ 9868085 (+)
G227116 NA non-coding downstream 21938 10665709 ~ 10667280 (+)
G227139 NA non-coding downstream 62139 10705910 ~ 10709545 (+)
LOC120553079 NA non-coding downstream 117482 10761253 ~ 10770671 (+)
G227152 btg1 non-coding downstream 198785 10842556 ~ 10851951 (+)
G227155 NA non-coding downstream 228276 10872047 ~ 10872679 (+)
ndufb2 ndufb2,LOC102790702 other upstream 1397239 9237226 ~ 9241349 (+)
lhfpl3 lhfpl3,LOC101483460 other upstream 1465368 9134594 ~ 9173220 (+)
rps16 rps16,LOC103382554 other upstream 2205891 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 3069285 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 3106511 7525892 ~ 7532077 (+)
G227121 kera other downstream 53483 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 88298 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 304514 10948285 ~ 10986201 (+)
G227216 NA other downstream 459065 11102836 ~ 11112905 (+)
G227278 LOC104928793 other downstream 1045398 11689169 ~ 11757317 (+)

Expression



Co-expression Network