LOC120553161


Basic Information

Item Value
gene id LOC120553161
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19311505 ~ 19346280 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791260.1
ATGGACTATTGCACGCCCCAGCCCAATCGTCGTCACAATCCCGTGGACAGCATCTGCCGCAAACTGCAGACTATTCAGTGGCGTGGTGACCGAGAGCCCAATTCACCTTTCCAGATTCCCAAACTCTCCTCCAGCAATTACGACAGTCCACAGAGTGGCCTCAGGCACAACCTGGAAAACATCCTGAAGAAAGGGACCCTCCACAGAGACGAGGGGGTTAAGGAGAAGGGGAGAGGGATGGGTATGCCGAGCTCTGCAGCTTCCCAGAGGAGCAGCCTGGGTCCCTCTGTCCCCATGTCCACCCCTTCCACCCCAGCATGCAACCCCGCCACGCCAACTAACGTCACATACACCATCACTAGCACTCTGGGCGAGAGGAGAGGTGCTGACGGGAGTGATTTAAGACAAGTTAAGACATGGCAGAGGTATTGTTCGACTCCCGCGGGCCAGTCCAAAGACTCCCCTTACTTTACATTCACACGAGGGCACCAGTCGGTGCAGCCCGGGAGCGAGCGGGCGAGCAGGAGCCCACCTTTGTGTCGTACCTTCACCCCAAACCAAAGCACCCTCTCCTACGACCTCAAATTCTGCTCAGGGGACACGGGGAACTCGACAGAGTATGAGCTGCCCTACCCAGCTCTGGTTGTGAAAAGACTGTCCATGGGAGACGGAGGATCCTCAGTGGCTTCTGAAAACAGGAAGGAGAATATGGCAGAAATCAGCCTAATCTGCGAGGAGAATCTGCTTGATACCATCTTCCATGCCTGTGACACCCAGCGCCGAGGTAAAGTGTACGTGTCTCACATTGTGGACTACCTGCGGCACACGACCAGTCGCAGCTCACAAGACAGCGGTCTAGAGGACCTTTGCAACATGCTCGATCCAGAACAAAAAGACGTCTCCATTGACCTGGATACTTACCACGCCGTCATGAAGGAGTGGATTGATGACTGCCGCAACAACGGGCAAGAGTCGACAGATGACGCCACTCAGGACTCAGTCAAACTCCGAGACAGCCTGTCTGccaAGAGGTCCGTGTTGCTCAATATGACCTCAGGAAGCTTGGAGGCCTTTGGAGGGGAGGCATCCAGAGCAGAATTCGAGACCTCTGAGCTGGTGTGTTGTGTTGCCGACCTCCAGATGAGCAACCAAAAGTTCCAGGAGGAGGTGAAGAAGCTGAAGCAGGTGGTGGAGGCCATGGAAGACAGCAACCAGAAGCTAGCAGAGGAGAATGAGGACCTCCGCAATCAGGCCAGGGTCAACCAGCAGCTGGCCCAGAAAGAGAAGATGCTGaacgaggaggtggaggagatgaaggccAGTCTGAGCTGCACAGAGGAAGGCAGAGCTCGTGCCTCCGCACACAGCAAACATGTGgaGAGAGAGAACCAGAGTCTCATTGCCAAGATTGCTTTTCTTCAGGAAGAGAACTTCAAGGTTACCGTGGAGATGGACGAGCTTCAGAAGAGACTTACACAGCTGTGTGACATTAACACTGAGCTTCAGGTGCAAATTCAATCGTTTGATGCTGTCCTCAGTGAAAAGGAAGCtgtgatgctagagAAGAGCAGACAGATAAGTGAGCTTAAGTCGGCAGTGGAGGAATACTCCTCTATCACAGAGCTGCTGAGGGCAGACAAGAGCAAGCTGGAGAACCAGATGCAGATGATGCACCCAGACCTGGCTGGGGCCCTGTCGGCGGCCTACAGGTTGAACCAGAGCAGCTCAGGATCCCTACAGACAGAACTGGCTTTGGCACAGTCACCACTGGAGCCCCCCCATGGAGTTGACCTTTTGTCCACCACTATGAGCTTTGCCTCCCCGATGGATGAGACGCTGGACAGGGAAGTGTTGCTGATGCTGCAGGGACCCAACCCTGAACACATGGCTCTGGAGTTCAAGAGCCTCCTAAAtaaactgAAAAGTGATTTCAGAGAAGAAAGCGACTCTGTCTTGTCTACAGCTAGAGGCTTGCTGGACGACCGCGCACAGCCAGCGGGCAACAAAGACCCCAGTCTCCAGAAGGTGCAGGCCAGGCTGGACGCGAGGAGGGCAGACTGGGCCCTCAGCCTGGACCAGCTGGCCCAGTACACAGACTCACTGGAGAAGGAGCTGATCAAAATGGCCAGTAACTTAAGGAGGTCCCGCACTGAGATCCTGCACCTTTCAGTCAGGGTGCAGGAGCAGGAGAACCAGAAGCGGCAGCTCTGTGAGGAGCTGGAGCAGCTAAAGACACCTCAGGACAGCAGAGAGGCCTCATGCCAGACACCTTCACCAGAGGAAGAGcctgGAGATGACTTGGACTGGGATGAGGAGTTCGCCCTTCAAGACTTCCTGAAGAACGAGTTAGCAGAGAGGAATTGCAGAGAACAGGGCGGGCGAACGGACAGAGGTGAGGAGGACGGGGAGGAGAAGTGGACCGTGGTCGACACAGCTGGAGAGGGAGAAGCGAGGGACACTTCCACTCCTCTGTCTGCCCTCTCTGGGGAGGCCCAGCCTGGGCATGGTGCAGAAGGCGGGGGTCAAGACTCGGCAACCTGCACTGAGTCAGAGCCAGAGATGAATTGTCAATCTTTGCAGGAGGCAGCAGTGCCGTTGAGCGCCCACTCACAAGCTGTCAGCATTAGACACCCGGAGGCGGATGCTCTCCCTGATCTGTCCCACCCAGAGAACAACAATGCAGAGTCTGTTGAGACTGCAGAGTCTTCAACCTGTGGTCCAACTGAGAATTTGAGCAACTCACCTGAACAGGACCAAATGGTGACACTTAGTAACACCACTCCCACAGCAGACCAGATGGTTCCTCCCGACAGCACATCACCTGGACCAGATGAGAACATTAACCAGACTGAGAgCACCCAGCCGGCCAGTGAGGACCACGggggagaagaagagaaagaaggtgAAGCGGACTCGAGCACAGGAGCCATGAGTCATACTAAGAGCCTGAAGCGGGACCAGTCGGTAGACAGATCAGTAGCGGAGGACAGCACGTGCCTGCTACCTGTGTTGGTTGAAGAGGAGGAGAGTGTGCAGGACACTACAGCCGAGGTGCCAACAGTAGCCGCCAGCATGGAAGGGACAGAGCGGCTCACCAGCAGCGGGGCAACCACCTTCTCTGAAAGCGGCTCTCCTCAGTCAGGATCGTCCTCCACACTTGCCGGCCAATTGGGGAGCGGCATGGGCAGCGTGACCTCTGACCCCAGCCAATCGGAAGATAGTGCTGCCAAAAAGGACTCCCTCCCCCTCTGTGAAAATAAAAGGCAACTGGAGCTGTCCCGCAGCATGGAGGCCATCGAGGAGCACAGGGTTCAGGAAGACCAAAGTGAGACCAGCTTGGCCAATGAGAAGGAATCTGAGACGTCAATGATCTTAGACACCAGTGGCACCTCCAAAGAGGACAAAAACAGCCTGTCCCCTAATGACAAGGAGGTTGagGCGGAGTTCCAGCGTCTGGCATTGGGCTTCAAGTGTGACATGTTCACCCTGGAGAAGAGACTCCGGCTGGAGGAGAGGTCACGGGACCTGGCTGAGGAGAATGTCCGCAGGGAGGTGTCCAGCTGCCAAGGCTTACTGCAGGCGCTGGCTCCTCTGTGTGAGGACGACAACCAGTCCATCGAGATCATCCAGAGGCTCCAGAAGAACCTGGACATTCTCATCCAGTCCATGACCAGGGTGTCCAGTCGCTCTGAGATGCTAGGAGCTATTCACCAGgagagCCGTATTGGTAAGGCTGTGGAGGTGATGATCCAGCATGTGGAGAACCTGAGGAGGATGTACACCAAGGAGCACGCTGAGCTGCTGGAGCTGAGAGAAGCCATCATGCAGAACGAGAGGTCGTTTGGATCACAAACTGAACGAGATGACTTCCGTGGCAAGAAGCCGACAACACAGTACTACAAGTCGTCAACTCGGCGGGTCAGCATAGCAGCAATCCCACGCTCTGGTGGAGCCAACATGCACTTTGACATGTCCAAAACACAAGACTGCTCAGAGGCTGAAACGGAGAGACTGACCAGGCGATCCCCATGGAATGTGCCAGGAAAGAGCAATGCGCGCCCCCCACTAAAGCGCTTTGTTAGCTCTGCGGCCTGGGTTGACACTGAAGAGCCCTCTCTCATGATGAAGGGGACGGCCTACGACAACACCGACTGCCTGTCGGAGGACGAGCAGAAGGAGCAGCCGgtggcagagaggaggaggtcCAGTCTCAGTGAGCTGGGCAGCAAACTCACCTCCCTCATTCTGCCCCTCAAGACTCCGAGCCCTTCCTCCAGCCCTATGTCCACAGACCGCGGAATGGGCCTGTCTCTGTCCGACAGCCTGTCTTCTTCCcgggcggcagcagcagcagtagccaGAGGTGGCAGGGGTCTCTGGCTTTGGTTGGCGATGGTGGTGGTGCTAGCAGGTCTCCTGGCACTGCTGGCCAGCCTGGTGATGCAGCCAGCGGTAGATGCAGCCCCTGTGGGGACCGGGGACTCCTGGATGACCATCCAGCAGCTGCTGTGGCCCTATACAGGGCTCCGGCATAACGGACAGCCCCCGGTCTAGCCCCTGACACCCGGGGGTGGATGGTGTCACCGCCCATCAACTCTCTGCAGAAATGATCTGTGCACTGGGGTGGTGATGAAGGAAGTACAGTGTACCACTCCTGAGCAGAGGCTGATGGGATGTTTACTGGTGCCTGAAGTAACTGGTGCCTGAAGATTCCTTAAACAAGACTTGCATTGACAGGACGGGCCAGGCCTCAGAGGATAGTTAACCCCATGGAGGAGTTTATGCATCACATCACGTTTGCTAAATTATTTagtcgtgtgtgtctgtgtgtgtgtttgtgtgtgtgtgtgtgtgtttttttaagagAAGAAGCAGTTGTTAAGGTGGTGAAACCCAAGCCCTTTTTAAGATGGGCTGCTCAACATCCTTACCACATTATGATGCAGTTTTCCAGTCAGTGCTGCTGGCAACGGTCTACCCGGACAACAGCACAATGCGTCAAATCAGACTTGATTCGTCAACAGAGCTGGTACAACGTTGACCAATCATGTCACAACTTCATCAGAATGACAACACTGATCCAACAAGTCATACAGTGGGCCGCTGTGCAGTTTTCCATTGACAAACATCATGGACGATGGCTCCAATTGTGCCACTTGgctttttaaacacatttcatgCACTTCAGGAAACTGGGGACTGCCAACCTTTTTTAATGGAATTTTGCAGAGGACATTTTATAACTTAAGTCTATAAACACTGGtaataaatctttaattttaaatttaaaaaaaattgttgaaaTCTATGAGTTTGTTAGTTTAGAGTGGGGATATGTgaatatctgtttttttttgttaagttatAATTATAAAGTGTGACCGTTTTaacaccgttttttttttttattttcctttttaagtTCTTGCTGTGGTTGTCACCGTTTTCAACATCATACTCTTTGTATGTTCCAAAGAAGATGCGTGAAACTTTGCACAAATAAAGTAGCCTATTCTACATAGA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791260.1 True 5523 mRNA 0.54 39 19311505 19346280

Neighbor

gene id symbol gene type direction distance location
etnk1 etnk1,LOC104964819 coding upstream 336865 18961085 ~ 18974640 (+)
pyroxd1 NA coding upstream 351657 18951283 ~ 18959848 (+)
LOC120553379 iapp,LOC103371156 coding upstream 362990 18946158 ~ 18948515 (+)
LOC120553377 LOC105936313,LOC107099288,LOC103155794 coding upstream 369530 18930270 ~ 18941975 (+)
LOC120553378 LOC103374463,LOC104964816 coding upstream 383539 18914965 ~ 18927966 (+)
utp20 utp20 coding downstream 17923 19364203 ~ 19396806 (+)
mapk11 mapk11,LOC100700904,LOC103382962 coding downstream 108544 19454824 ~ 19470973 (+)
trnaq-uug_5 NA coding downstream 112803 19459083 ~ 19459154 (+)
LOC120553798 LOC104924523,LOC103359230,LOC104954154,LOC103382963,LOC106531213 coding downstream 126870 19473150 ~ 19479275 (+)
LOC120553799 NA coding downstream 132637 19478917 ~ 19483152 (+)
LOC120553381 NA non-coding upstream 402624 18905236 ~ 18908881 (+)
LOC120553383 NA non-coding upstream 413978 18892174 ~ 18897527 (+)
G228622 NA non-coding upstream 572021 18738484 ~ 18739484 (+)
G228611 LOC102192848,LOC101469293 non-coding upstream 633940 18676351 ~ 18677565 (+)
G228605 NA non-coding upstream 647533 18604993 ~ 18663972 (+)
G228787 NA non-coding downstream 74092 19420372 ~ 19420829 (+)
LOC120553618 NA non-coding downstream 177795 19524075 ~ 19559043 (+)
LOC120553213 NA non-coding downstream 369982 19716262 ~ 19717346 (+)
G228905 NA non-coding downstream 463395 19809675 ~ 19810580 (+)
LOC120553215 NA non-coding downstream 487727 19834007 ~ 19841662 (+)
LOC120553630 muc19 other upstream 456191 18822832 ~ 18855314 (+)
srr srr,LOC105936311,LOC103459528 other upstream 778391 18530136 ~ 18533114 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 2388682 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 2394577 16880276 ~ 16916928 (+)
stmp1 NA other upstream 2443709 16866310 ~ 16867796 (+)
LOC120553164 NA other downstream 6703 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 64210 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 285657 19631937 ~ 19839382 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other downstream 506648 19852928 ~ 19905952 (+)
G228924 NA other downstream 635968 19982248 ~ 19985648 (+)

Expression


Co-expression Network