pwp1 (pwp1,LOC102796104)


Basic Information

Item Value
gene id pwp1
gene name pwp1,LOC102796104
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14339398 ~ 14348071 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791291.1
GACCTATTAACTCGCATGTACGCCTACTGTACGCGTGCCTGAAGTGGAGCAGTTTGGACGCTACACGTTTGtagattttattgtatttgatCGCTAAACCAGACGGTTTCTACAAAATGAGTTCCCAGATTACTTGTGTCGGATGGGTGGCGAAAGGCATTGCCAAGGAAACCCCAGACAAAGTTGAGTTGAGCCAAGAGGAGCTACAGCGCATCATTACTGAAGCAAAACAGGAGCTGggGGAACTAGCAGCCGAGGATGACGAAGAGGTTGATGAAGGTATTGCATGTGAGGAGAATCCTGATAGTAATACAGCGGACGTTGCTGGAGTTTCAAAAGATGAGAATgaagaaggaaaggaggaagatGACGAGCTAGCAGAGTATGGCCTGGATAAATATGATGAAGAGGATGCAGCGACCGCTAGTCTCGGGGACAGTCTGGCTGGGCTTACGGTGTTCAGCTCTAATGAGGAGGATCCTTACATCACCATCAAAGACACAGACCAATATGAGCGAGAGGACTTCCAAATCAAGCCCAGTGACAATCTCATCCTAACCGGCAGGGCAGAGAAGGACTGCTGCAATTTGGAGATCCATGTTTATAACTCAGAGGAAGACTCTCTGTATGTCCATCATGATATTCTGCTGCCAGCTTACCCACTGTGTGTGGAGTGGCTAAACTTTGACCCCAGCCCTGGAGAAGGACCTGGTAACTACGCTGCTGTGGGCAACATGACTCCTCAGATAGATGTGTGGGACCTGGATGTGGTGGACTGCTTAGAGCCAGCCTTCTCCCTGGGGAGCAAAAAAGCCtccaagaagaaaaagaaggggaAGAAGGGGGCAGCGGCAGAGCCTGTCGAGGGGCACACAGATGCAGTGCTGGATTTATCCTGGAACAAACTAGTCAGAAATGTGTTGGCCAGTGGATCAGCAGATGAAACAGTTATCTTGTGGGATCTTACTCAAGGCAAACCAGCCACAACTCTGCGCAGGCACACTGATAAGGTTCAGACGTTATCATTCCACCCATTTGAGGCACAGACTCTGATATCAGGATCATATGACAAGACAGCAGTCCTGTTTGACTGCCGCAGTCCAGACAACAGCAATCGGACCTGGAGGTTTAGTGGTCAGGTGGAGCGTCTGACCTGGGACCACTTTTCACCGTGCAACTTCCTGGCCAGCACAGAGGATGGATTTGTCTACTGTCTGGACGCACGCTCGGATAAACCTGTTTTCACCCTGAAGGCTCATGATGCAGAagtgtcagGTTTGGACCTCAGCAGCCAAATTAAAGGATGCCTGGTCACCTCATCAGCTGACAAACACGTAAAGATTTGGGACATTTTGGGCAACAAGCCCAACCTGGTACACTCACGGGATATGAAAATGGGTGTGCTGTTCTGTGCGTCATGTTGCCCTGACCTGCCCTTCATCTATGCCTTCGGGGGACAAAGGGATGGCTTGCGAGTTTGGGATATAAGTGATGTTGCAGCAGTGGTTGGGGTGTTTGGCAGTCGAGAGCGCTTGGTGGCGAACACGGGATCCCAGGCATCCAGCACTGCAGCCACAGCAGAGATGGAAGTCTCCTAGTCACACTCTGGATGCATCACCAGCctgttaacatgaataaacTGAGCAACATATCAAGCTGCTCCGCTTGTTGCGGTGTTCCTCATAGTGCAGTAGTTCAAGGGGTAAGGTGAATAAATTAAGCTGCATTCCTGAAGAATTTGAATGGTTTGCCAGAGTGCTAACTGGACCTAAAACACCTGAAAACGTGTTCAGCTTGTCTCTCTGCAAAGATAACAACAGTAGCTTTGCAAACTCAAAAATGTGTAAAGGAAAaagaggttgttgttttttatattcatattaTTGAATATTTCCAAGGATTTGTTTTAGATTTTCAGGTTAAAGCAGTGATTTGAATATTTGAATTACTCCGAATTGTTTATATTACTTTGAGATCTCTTTCAGTTTGCCTTTCTttgtacatttacaaatgtaatatGCTACTAAAACTATTTTCACATGAATTATTGCATACCTGGGTTTCCTGGTAATGAATGGTAAAATTAAATATCAAAATAAGTCTGTGTACTCACATCTGGCcaaagtattgaaaaataagact

Function

symbol description
pwp1 Predicted to be active in nucleus. Orthologous to human PWP1 (PWP1 homolog, endonuclein).

NR:

description
PREDICTED: periodic tryptophan protein 1 homolog

GO: NA

KEGG:

id description
K14791 PWP1; periodic tryptophan protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791291.1 True 2142 mRNA 0.46 15 14339398 14348071

Neighbor

gene id symbol gene type direction distance location
mrpl42 mrpl42 coding downstream 951 14334852 ~ 14338447 (-)
ube2nb LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996 coding downstream 5459 14326097 ~ 14333939 (-)
nudt4b LOC104951656,LOC104933915,LOC103358110,LOC107384862 coding downstream 29787 14290822 ~ 14309611 (-)
pkp2 LOC103399101 coding downstream 49368 14276852 ~ 14290030 (-)
rassf8b rassf8,LOC103358112 coding downstream 77138 14241997 ~ 14262260 (-)
ano6 ano6 coding upstream 675 14348746 ~ 14366431 (-)
LOC120553322 NA coding upstream 27565 14375636 ~ 14391277 (-)
LOC120553347 LOC104932584,LOC103373126 coding upstream 44321 14392392 ~ 14397779 (-)
LOC120553349 LOC103373125,LOC103382827 coding upstream 53156 14401227 ~ 14406493 (-)
LOC120553439 NA coding upstream 117684 14465755 ~ 14468407 (-)
G227814 NA non-coding downstream 107592 14231543 ~ 14231806 (-)
LOC120553016 NA non-coding downstream 119800 14178745 ~ 14219598 (-)
G227804 NA non-coding downstream 196139 14140179 ~ 14143259 (-)
G227784 NA non-coding downstream 389517 13949541 ~ 13949881 (-)
G227717 NA non-coding downstream 537895 13797584 ~ 13801503 (-)
G228019 NA non-coding upstream 421927 14769998 ~ 14770247 (-)
G228020 NA non-coding upstream 422427 14770498 ~ 14770967 (-)
G228021 NA non-coding upstream 426246 14774317 ~ 14774848 (-)
G228022 NA non-coding upstream 444174 14792245 ~ 14792469 (-)
LOC120553257 NA non-coding upstream 821572 15169643 ~ 15178955 (-)
LOC120553486 NA other downstream 680126 13643583 ~ 13659272 (-)
LOC120553470 wnk1 other downstream 721642 13516507 ~ 13617756 (-)
LOC120553407 napepld,LOC106940535 other downstream 831151 13485886 ~ 13508247 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other downstream 994937 13126168 ~ 13344461 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other downstream 1272870 13038151 ~ 13066528 (-)
waslb LOC103370764 other upstream 76166 14424237 ~ 14450589 (-)
grm8a grm8 other upstream 286039 14634110 ~ 15053285 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other upstream 707404 15055475 ~ 15089983 (-)
G228191 NA other upstream 1423167 15771238 ~ 15791853 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other upstream 2400771 16748842 ~ 16823432 (-)

Expression


Co-expression Network