ube2nb (LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996)



Basic Information


Item Value
gene id ube2nb
gene name LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14326097 ~ 14333939 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039791292.1
ACGTCATTTGAAGCCACCGGAAGAGTGAGTTATCGGTCTCCGCCCCGGCAGCTCAGTCAATCCAACCTGAAGAGAAGGCGAGTCCACggctaaaaataaaatagctAACACAAGATGGCCGGTTTGCCTCGTAGGATTGTAAAGGAGACACAGCGGTTGATGGCAGAGCCTGTTCCAGGGATCACGGCTACTCCGGATGAAGGGAATGCACGTTACTTCCATGTGATCATTGCAGGGCCTCAAGACTCTCCTTTTGAAGGAGGCACATTTAGACTTGAACTATTTCTTCCAGAAGAGTATCCCATGGCAGCTCCCAAAGTACGATTCATGACCAAAATCTACCACCCCAATGTTGACAAACTGGGAAGAATATGTTTAGACATTTTGAAAGATAAGTGGTCTCCTGCCCTGCAGATCCGCACAGTGTTGCTATCTATCCAGGCGTTATTAAGTGCTCCCAATCCAGATGATCCCCTGGCAAACGATGTTGCAGAGCAGTGGAAGAAAAATGAAAGCAATGCCATTGAGACAGCCCGATCATGGACCAAGCTCTACGCGGGCAACACTGAAGTATAGAAGAAGAGAGTCGAGGCTTCTGAATGTGATTCACAAAATGTACTCCTATTCTGTCAACATTCGAATTTAAcggacacaaaaaaaagagaaaaaaaagattataagTCCAAATCTATTTGAAAGAAATGACAAGATTTACTGCTGCAGACCTCTGGGTGACTTATTTTCCTCTCTGATGCGTTAAGTGTGTGTtagccttttctttttttttttccttttttcctgtgTTGCTATTTAAATGCATGGACAGAGAACAACACCCTCCCCACTACAGTCTTAGAAAATAACATGCAATATGTTGTCCTGAACCAGGCACATACTGGTACGTTTGCAAAATATACTTGCATTAAAGCTGTTGTTCTTTTAACCCATTTGTCAACACATCTGTATGTCTTTTGTGAGAGATGACATGTTCTGTTATTTCAACACGTAGTGTGTACAGCTGTCTTTTCACTAGTACTAGTAAGCAAATGAAAAATAGGAATATGATGACGTTTGTCTTTACTCTTTTTAGGGAATACGATgagtttttggaaaaaaaaagcccttAACACTCCATAAGAAGGTTAGTGTCTGTGCATACCAACTCGTCACAACACTGAACATTTAGTTGGTGGTGCAGCAACTGTAGTGTAAAATCATTTCATGTACACATGGGGCACTTAATACTGAGCACAAAGGTGAAACTCTAATATGTTCAGATGATATCATTTGTAAAACTGGACATAAAAGCGAGTACATTTTAGAGGCTTTCCCACAGGATGTACTTCCTAAAACCTTCAATGCCACATCAAAGACACTTTCTGTAACCACAGCACCTTTCGAGTTAGATTTTAAAGACGCTGTAATTATACACTGAAAAAACAGAGGGGGTCTCAGAGGGCAGAAATTAAGTATTTTCATCCATAGACGACTGAGGGAGGTTtattccaacattttaaatgaaaaataaatttaagGATGCCCCGTCGGTTGCTGTATACCTGCCAAATTTGCAGGTAGAGAATACACAGTACTGAACAGCCACAGCTAACATGTAAAAGCATCTAGTCCATGGCTAGTGTCAACTTGGGGCCCTAACAGATGTaatttgtatctcttttcattATTTACATCTTAACAGTTGTTTTACGTTGATAGAAAAGACAAGAATATTGTGTGATTAGATGCCTGGGCCCAATTAGATGAGGACTTTGCTTATAATAATCTAAAATCGATGATTTAATGTCTTATTTGGTTTTTTTGAAAGTTAACATCTGTTCGGCAGCAGTATAAAATTTTGCCTTTTTTCTCCACTTATCAATTTTCAGTAAAATAGACAGTTTGGGGAGGGTGAGCAAATTACGTCCACATGCTTTTTAAAAAGCCATTCCCAACACATTTAGAAAGGTAGAATGACACACATTGTTCGTGCTGAAAAGGATCAGTATGCATGTTGTAACTACTATGATGTGttgaaaatgtccttttttttaaggGTGTAGGTcgaactgtttttgtttttattttattttttttaaccgtcTGTCCATGCTATCTATGTTGCCTGTTctctattttattttcagtgttACTTCATTAAAAAGGCATGTACCATAACCAAACTGATATCAGGACAGTTAAAACCTAGTTTTTTCTTTGGGGTGTTTGTAAGAGCTGAGCTGTTACGGTGTCTTTGAAGGGAAagtttaggctttttttttttttttttggggaaggTTTTGTCGATGGTTGCAAAGTTGTCTTTGACCCTTAGATGGTCTCACCTGCTTTCGCTCTTTCTATGATAACTGATCTGTGATGATTATGCAAGTGCATTGAATTAATTGGGTCATTGTGGTggcaaaaaaagtgatattacaaataaaaagtatTCAACATTAAA

Function


NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 N

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0051443 positive regulation of ubiquitin-protein transferase activity biological_process
GO:0033182 regulation of histone ubiquitination biological_process
GO:0042769 DNA damage response, detection of DNA damage biological_process
GO:0031058 positive regulation of histone modification biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000729 DNA double-strand break processing biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0031372 UBC13-MMS2 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043130 ubiquitin binding molecular_function
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10580 UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039791292.1 True 2461 mRNA 0.39 4 14326097 14333939
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Neighbor


gene id symbol gene type direction distance location
nudt4b LOC104951656,LOC104933915,LOC103358110,LOC107384862 coding downstream 16486 14290822 ~ 14309611 (-)
pkp2 LOC103399101 coding downstream 36067 14276852 ~ 14290030 (-)
rassf8b rassf8,LOC103358112 coding downstream 63837 14241997 ~ 14262260 (-)
zgc:113263 LOC103358113 coding downstream 166028 14119739 ~ 14160069 (-)
ptpn12 ptpn12 coding downstream 219977 14053566 ~ 14106120 (-)
mrpl42 mrpl42 coding upstream 913 14334852 ~ 14338447 (-)
pwp1 pwp1,LOC102796104 coding upstream 5459 14339398 ~ 14348071 (-)
ano6 ano6 coding upstream 14807 14348746 ~ 14366431 (-)
LOC120553322 NA coding upstream 41697 14375636 ~ 14391277 (-)
LOC120553347 LOC104932584,LOC103373126 coding upstream 58453 14392392 ~ 14397779 (-)
G227814 NA non-coding downstream 94291 14231543 ~ 14231806 (-)
LOC120553016 NA non-coding downstream 106499 14178745 ~ 14219598 (-)
G227804 NA non-coding downstream 182838 14140179 ~ 14143259 (-)
G227784 NA non-coding downstream 376216 13949541 ~ 13949881 (-)
G227717 NA non-coding downstream 524594 13797584 ~ 13801503 (-)
G228019 NA non-coding upstream 436059 14769998 ~ 14770247 (-)
G228020 NA non-coding upstream 436559 14770498 ~ 14770967 (-)
G228021 NA non-coding upstream 440378 14774317 ~ 14774848 (-)
G228022 NA non-coding upstream 458306 14792245 ~ 14792469 (-)
LOC120553257 NA non-coding upstream 835704 15169643 ~ 15178955 (-)
LOC120553486 NA other downstream 666825 13643583 ~ 13659272 (-)
LOC120553470 wnk1 other downstream 708341 13516507 ~ 13617756 (-)
LOC120553407 napepld,LOC106940535 other downstream 817850 13485886 ~ 13508247 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other downstream 981636 13126168 ~ 13344461 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other downstream 1259569 13038151 ~ 13066528 (-)
waslb LOC103370764 other upstream 90298 14424237 ~ 14450589 (-)
grm8a grm8 other upstream 300171 14634110 ~ 15053285 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other upstream 721536 15055475 ~ 15089983 (-)
G228191 NA other upstream 1437299 15771238 ~ 15791853 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other upstream 2414903 16748842 ~ 16823432 (-)

Expression


ube2nb(LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996) Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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ube2nb(LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996) Expression in each Bioproject

Bar chart with 8 bars.
ube2nb(LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Co-expression Network