mrpl42 (mrpl42)


Basic Information

Item Value
gene id mrpl42
gene name mrpl42
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14334852 ~ 14338447 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791293.1
CTTGAGTGCTAGGACGGAAATATTATAGTGGTGCACACCCAAAAATAATTCAGCATGGCGTCAAGTCATTTGTGCAAGCTTCACAGTCTCTTAACGCGACTTTCTAACGGTTCCACACTACTACGTGTACAAACATGTGTGGTGCCAATGCGACAGAAGTCCAGTGTCACTGGTCCTTCACTTGATGGCCCGAACTGCAATGTGGAAATTGGTGTGACCTCAGACGGGAAAACCATAGTGTGCTACCATCCTACTGTCGACATTCCCTATGAGTTTACCCAGCCTATAGAACGACCAGACCCCTTGAACACCCCGGTTGAGACCCACGACCAGATTTTAAAGGCCCACCTCAGCAAGGAGGTGCTGAAGGACAAGAAGGGGCCCACTATAGAGGAGCTGAGCAATATGTTTTTCACCACCAAACATCGGTGGTATCCAGTAGGACAGTACCACATGAGACGCAGAAAGCGGGATCCCCCAAAGGACAGATAGTTGAAGGCCAAAGTTACAgtctgttttattgtcacaataaTGTATAATAAACTGTTCAATATTTT

Function

symbol description
mrpl42 Predicted to be located in mitochondrion and ribosome. Orthologous to human MRPL42 (mitochondrial ribosomal protein L42).

NR:

description
PREDICTED: 39S ribosomal protein L42, mitochondrial

GO: NA

KEGG:

id description
K17423 MRPL42; large subunit ribosomal protein L42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791293.1 True 557 mRNA 0.46 5 14334852 14338447

Neighbor

gene id symbol gene type direction distance location
ube2nb LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996 coding downstream 913 14326097 ~ 14333939 (-)
nudt4b LOC104951656,LOC104933915,LOC103358110,LOC107384862 coding downstream 25241 14290822 ~ 14309611 (-)
pkp2 LOC103399101 coding downstream 44822 14276852 ~ 14290030 (-)
rassf8b rassf8,LOC103358112 coding downstream 72592 14241997 ~ 14262260 (-)
zgc:113263 LOC103358113 coding downstream 174783 14119739 ~ 14160069 (-)
pwp1 pwp1,LOC102796104 coding upstream 951 14339398 ~ 14348071 (-)
ano6 ano6 coding upstream 10299 14348746 ~ 14366431 (-)
LOC120553322 NA coding upstream 37189 14375636 ~ 14391277 (-)
LOC120553347 LOC104932584,LOC103373126 coding upstream 53945 14392392 ~ 14397779 (-)
LOC120553349 LOC103373125,LOC103382827 coding upstream 62780 14401227 ~ 14406493 (-)
G227814 NA non-coding downstream 103046 14231543 ~ 14231806 (-)
LOC120553016 NA non-coding downstream 115254 14178745 ~ 14219598 (-)
G227804 NA non-coding downstream 191593 14140179 ~ 14143259 (-)
G227784 NA non-coding downstream 384971 13949541 ~ 13949881 (-)
G227717 NA non-coding downstream 533349 13797584 ~ 13801503 (-)
G228019 NA non-coding upstream 431551 14769998 ~ 14770247 (-)
G228020 NA non-coding upstream 432051 14770498 ~ 14770967 (-)
G228021 NA non-coding upstream 435870 14774317 ~ 14774848 (-)
G228022 NA non-coding upstream 453798 14792245 ~ 14792469 (-)
LOC120553257 NA non-coding upstream 831196 15169643 ~ 15178955 (-)
LOC120553486 NA other downstream 675580 13643583 ~ 13659272 (-)
LOC120553470 wnk1 other downstream 717096 13516507 ~ 13617756 (-)
LOC120553407 napepld,LOC106940535 other downstream 826605 13485886 ~ 13508247 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other downstream 990391 13126168 ~ 13344461 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other downstream 1268324 13038151 ~ 13066528 (-)
waslb LOC103370764 other upstream 85790 14424237 ~ 14450589 (-)
grm8a grm8 other upstream 295663 14634110 ~ 15053285 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other upstream 717028 15055475 ~ 15089983 (-)
G228191 NA other upstream 1432791 15771238 ~ 15791853 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other upstream 2410395 16748842 ~ 16823432 (-)

Expression


Co-expression Network