echdc3 (echdc3,LOC102797483)


Basic Information

Item Value
gene id echdc3
gene name echdc3,LOC102797483
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 5393640 ~ 5399303 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791340.1
CGTGCCTTTGACGTAGTCGCACCCGGAAGTGAGAGTGGGAAGGTGAAGCGTACACCAACCAACATGGCTCGTAGTTTGTTTTGCAGAGCTGTCGGTGTGTTTCAGCTCAGCAGGACTTCACCACTGCTGACAGGGACTCGTTTCTACTCTCAGACGGAACCGGAGCCGCTGACGGTGAGACAGCAAAACAACGGAATAAGGAGAATAATATTGAACAATCCCAAGAAGAGGAATGCTCTTTCTTTGTCCATGCTGGAATCCCTCAAAGAAGATATCCTTACTGACGTCGACGGGGATGATCTCAGAGTTGTTATCATATCAGccAAAGGTCCAGTGTTTTCCTCTGGACACGACCTGAAGGAGCTAACGTCAGCCCAGGGCAGAGAATATCACACAAAGGTGTTTCACACCTGTGCAGagGTAATGACTCTGATACAAGACATACCTGTTCCGGTGATCGCCATGGTAAACGGTGTTGCCACAGCAGCCGGTTGCCAGCTTGTTGCCAGCTGTGACATTGCCGTGGCGACGGAGAAGTCCACCTTCGCCACTCCAGGTGTCAACGTGGGTCTGTTCTGCTCGACGCCGGCGGTGGCCATCGGCAGAGCTGTGCCGAGGAAGGTTGCCATGGAGATGCTTTTCACAGGAACTCCCATCTCCGCCCATGATGCTTTGCTGCATGGTCTGATCAGTAAGGTGGTGCCAGAAGAACGACTTGAAGAGGAGACGTTAGCCATCGCCCAGCGGGTGTGTCAGGCTAGCCAACCTGTTGTAGCCCTCGGCAAGGCCACTTTCCAAAGACAAATGGCTCAAGGTCGAGATGCAGCGTATGCCACTGCCTCCAAGGTGATGGTTGACAACCTGGCTCTAAGAGACGGACAGGAGGGGATCCGGGCCTTCATAGAGAAACGCAAGCCAGTGTGGAGCAATAAAGCAGAAAAGGCCCATGACTGATGGACTGTTGACTTTATCACAGGAGACAGTGATTATCCTGACTGGTACATGTGGTCTTCGGTTACTAGTGTGGAAGAATAATTAGCACCAGTCCCAAGTCAATGTATGGgctaggctacttttaaaatgtggctgtGTAATTTGCAAGATCACAGCGATTGAAGTTTGAATTATTGACTTCCTGTTCCCTGAGGATTTCCTCCTTTTTGCTGGGACTGAAGACAAGTAGCTGAACCATTGTGTGCCTTAAAAGTTGCTTTGTGGAGATGAGAAGGAAATACTTTGATACCAACCAGAGGACTTCAGATGTTATTTGACATAATGGACGAAGAATGCTGCTCTTCGTATTTGTATAACTGTAAATGCAATTAATAGGGATACACATTGGTAGGAGTTATTTCAAATTTCCAGTGTTTTGGAAGGAAATTACTGCATCATTTTATGCATAGACAATATGAGGTGACTTACAGTTTAAGCTCATTAGGACCTATCTGGTTCtttgataaaaaagtaaaagcatGTGTACATGAAGACATAAGAGGAGACGTCGCAAGGTGCATTTCAGCATGTAAAAGGATAGCTTGGAATCCAACcaccaaaaataaaacagctCTGTGCACTGCAAATGGTGAACAGAAACTAAATGGTTCACACGCAGTTTAAATCAGTTTCGGATTCTTGGTCAGTTTTAAAtgaattttttatatattgggTATACGGTGGTGTTTTAATCCCATTTGCGTCAATGAAGCAATTTCTCAGAAGCAAAGTTGAAATAAATAGATGCCCTAACATAAA

Function

symbol description
echdc3 Predicted to enable catalytic activity. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in mitochondrion. Orthologous to human ECHDC3 (enoyl-CoA hydratase domain containing 3).

NR:

description
PREDICTED: enoyl-CoA hydratase domain-containing protein 3, mitochondrial isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791340.1 True 1752 mRNA 0.46 6 5393640 5399303

Neighbor

gene id symbol gene type direction distance location
kcnj8 kcnj8 coding upstream 700 5383033 ~ 5392940 (+)
LOC120553019 NA coding upstream 155296 5235150 ~ 5238344 (+)
LOC120553055 NA coding upstream 589398 4793287 ~ 4804242 (+)
dmtf1 NA coding upstream 644398 4734262 ~ 4749242 (+)
LOC120553359 v1ar1,LOC100695840,LOC101485029 coding upstream 697457 4688927 ~ 4696183 (+)
kin kin,LOC103372864 coding downstream 1114542 6513845 ~ 6519452 (+)
itih5 itih5 coding downstream 1135872 6535175 ~ 6553086 (+)
sfmbt2 sfmbt2 coding downstream 1179809 6579112 ~ 6636681 (+)
gnsa gns,LOC102788091 coding downstream 1319805 6719108 ~ 6734409 (+)
LOC120553270 NA coding downstream 1577029 6976332 ~ 6995588 (+)
G226014 NA non-coding upstream 65271 5327996 ~ 5328369 (+)
G225983 NA non-coding upstream 189481 5186966 ~ 5204159 (+)
G225986 NA non-coding upstream 207157 5185667 ~ 5186483 (+)
G225985 NA non-coding upstream 208074 5183913 ~ 5185566 (+)
G225973 trhde,LOC103372213,LOC102788275 non-coding upstream 229867 5079479 ~ 5163773 (+)
G226027 NA non-coding downstream 145543 5544846 ~ 5552199 (+)
G226028 NA non-coding downstream 152950 5552253 ~ 5552473 (+)
G226029 NA non-coding downstream 153218 5552521 ~ 5553325 (+)
G226042 NA non-coding downstream 350825 5750128 ~ 5776433 (+)
G226085 NA non-coding downstream 519791 5919094 ~ 5919414 (+)
abcc9 abcc9,LOC107387088 other upstream 20003 5281258 ~ 5373637 (+)
G225894 NA other upstream 735671 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 1454686 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 1552466 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 1858968 3534600 ~ 3534672 (+)
prkcq prkcq,LOC102789446 other downstream 1261217 6660520 ~ 6686639 (+)
snrpf snrpf,LOC106576293 other downstream 1919214 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 1923767 7323070 ~ 7332259 (+)
klhl42 klhl42 other downstream 1964022 7363325 ~ 7368216 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 1971139 7370442 ~ 7400399 (+)

Expression


Co-expression Network