XLOC_005031


Basic Information

Item Value
gene id XLOC_005031
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 64267 ~ 65760 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010787
ATGGGTGAGTCTGTGAAGCGGGCGGGCTGGACGCGCACTCTGGCGTTCACCGTGTGTTCTGCAGCTATCGGAGGCACGTTTCAGTACGGCTACAACATCTCCATCATCAACGCGCCCACTGCGCATGTGCAGAGCTTCATCAACGCCAGCTGCGTGCGGCGCGGGGCGGCGCTGGACCCGGCGCGGGTGACGCTGGTGTGGACGCTGGCGGTGTCGGTGTTCCCGCTCGGGGGGCTGCTGGGCTCTCTGCTGGCGGGGCCGATGGCGGTGCGGTGCGGCCGGAGAGGAGCGCTGCTGCTTAATAACATGTTCCTGCTGCTCGGTGCGCTGCTGGCCCTGAGCTGCCGCGCCGCCGGCTCCTTCGAGATGCTGATCACTGCCCGTCTGCTGGTGGGCATCAACGCGGGCGTCAGCATGAACGTGCAGCCCATGTACTTTGGCGAGAGCGCACCCAAGCATCTGCGCGGCGCCGTGGCCTTCTCCTCCGCTGTGTTCACGGCGCTGGGCATCCTGATGGGGCAGCTGGCGGGCCTGACGGCGGTGCTGGGCAGCGAGGAGCGCTGGCATTACCTGCTGTCCAGTAATGCGCTGCCcggcctgctgcagctgctgctCCTGCCCTGCTGCCCCGAGAGCCCGCGCTTCCTGCTGATCGACCGCGGCGACAGCGACGCCTGCGCCCGCGCCCTCGCCCGCCTGCGCAGCGGCAGCACCGCCGCAGAGATGGAGGAGCTGCTGCAGGAGCAGGCGCAGGCGGGTGACGCGCAGGCAAAAACTATCTGGCAGCTGTTCGCGGACCGCAGCCTCCGCCGCCAGCTCTGCATCGTGATGACGGCCAGCAGCGTCATGATGCTCTGCGGCAACGACTCCATCTACTTCTACGCCTCCTACATCTTCCAGCAGGCGGGCATCCCCTCCGCCAGCATCCAGTACGTGACGGTGGGCACGGGCGCCTGCGAGTTCCTCTCTGCTGTCACCTGTAATCTGCTGATCGAGCGGGTGGGccggcgccccctgctggccggAGGGTACCTGCTGATGTCCTGCTGGGCCGTGGTGTTCACGGTGGCGCTGTCTCTGCAGGACGCGGTGCCCGGGATGCCCTACCTCAGCATGACCTGTGTGTTCGCCTACATCCTGAGCTTCGGCATGGGCCCCGCGGGGGTCACCGGGATCCTGCCCGCAGAGCTCTTCCAGCAGACGGAGCGTCCCGCCGCCTACATGATCGCCGGCTCCATGATGTGGCTCTGCCTGTTCCTGGTGGGCATGGCCTTCCCCTTTATAGTGGCGGGTCTGGGCCAGTTCTGCTTCCTGCCCTTCTGCGGCGTCTGCGTGGCCGGCTGCGTGTTCATCAGCTGCAGCTTACCGGAGACCAAAGGGCGGACGCTGGCGGAGATCACGGCGGAGTTCCAGAAGCGCAGCGGGGCTGCGAATGGACAACCACGATATGCAGAGCAGCCGCAGACCGACCCGACAGAACATATACAGATGTGA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0018209 peptidyl-serine modification biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0016442 RISC complex cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016740 transferase activity molecular_function
GO:0061980 regulatory RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010787 True 1494 lncRNA 0.67 1 64267 65760

Neighbor

gene id symbol gene type direction distance location
XLOC_005030 si:ch1073-357b18.4 coding downstream 9892 52468 ~ 54375 (-)
XLOC_005029 wdr45b coding downstream 17282 42592 ~ 46985 (-)
XLOC_005028 foxk2 coding downstream 22028 32370 ~ 42239 (-)
XLOC_005027 shisa6 coding downstream 52697 9059 ~ 11570 (-)
XLOC_005032 FO818699.1 coding upstream 52944 118704 ~ 124264 (-)
XLOC_005033 dnah9 coding upstream 71389 137149 ~ 145076 (-)
XLOC_005034 NA coding upstream 105526 171286 ~ 175519 (-)
XLOC_005035 NA coding upstream 114440 180200 ~ 180809 (-)
XLOC_005036 CABZ01102039.1 coding upstream 138335 204095 ~ 212843 (-)
XLOC_005037 NA non-coding upstream 184321 250081 ~ 279335 (-)
XLOC_005038 NA non-coding upstream 196636 262396 ~ 265201 (-)
XLOC_005042 NA non-coding upstream 272048 337808 ~ 355555 (-)

Expression


Co-expression Network