LOC120553199 (LOC104965315)


Basic Information

Item Value
gene id LOC120553199
gene name LOC104965315
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26216141 ~ 26219357 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791358.1
AAGAGGAGATTTAGTAATGGATTGCTTTCACAGGAGGATAAAAGCCAGAgctcaaagcacacacacagttcagacCTCAGCTCCTCAAGCTATGTCAACACACAGCACAATCGTTGCTTCTCTGATTGGGACCATTGCCGTCCTGTCCCTAATGAAACCGGACTGGGTGGCTGGACGAGAAGATGAACAGGAATTTAAACTGTGTGTCACATCGTTGCAGAGAATGAAAGACCTCTCTCATCAAAATCTGACAACTGTTCCCTTAAATCTTCCCAACGACACAGAGTATTTGGACATTTCTCACAACTCCATCCAAAGACTGAGCGGAGCTCCGTTTTCTGGACTGTCCCGGCTCTGTTGTCTGAAGGTGACTCACTGTGGCCTGCAGGACATCTCTCCCAGTGTGTTCGCTCACACACCAGCACTCAAAGTTCTAAATATATCTTACAATGACTTGGCTCTCATCCCTGACATTTCATTGAAACAGCTGAAAATTCTTGATTTGGCCAACAATCTGTACAGCAGCTATAGTATTCCAGCATCATTTCAGAAGCTAACGAATCTGTACGTGCTGTCATTGGGCAGCACAGCTGCTCCGTCAGTCAACCTCCATGACTTTGATCCGTTGGCGAACGTTTCTCTGCATCATCTGGTTTTGGGAGCAGGAATTGGCTGGCAAAAGTATGACACCGGAGCTCTTGCAAAACTGAAGTCTCTtcaaacattttcacttttcGCATCTTTTTGCACTGCTCCCGGGATGTTCGAGAACGTCCTCGTGGACTTGAATGCGACAAGAGCAACATCATTGAGATTCATCACTCCATTTCCAGACAAGTGCAGTGTGACCGGCGAAATGTTTAACAACCTGAGAACAATGCCATTCATACGGAATCTCACCATAGAAAACACGTGGATAAACAGCTCCTTTATGGAGGGCTTTTTGAAGAACGTGTGGCTCTCCCACCTTTATGACCTCTCGTTCGTCAACATCACTTATAATGAAGACACACCAGACGGGTTTCAGTTTCGCACCATTAATCACACGGTCAATCTTTGCTCAATTACCTTCAACGGTGTGCATCATTATCAATACAGATACCCCATAATCAACATGAGCTTAAAGGCCATCTCAAATCTGACCTATCTGAAGTTCTCCAGGAGCGGAATGAACATTATACCCTGCCATCTCTTCTCTGTCCTGCCGTCGCTGGAGACGCTTGATCTGTCAGATAACCTCTTAACGGATGCAGGCTTCTGGTGGTTTATGTGTACGCAAACCTCCGTCTTCCCCAAACTCAGGACACTGTCTTTAAGCAAGAATCGCTTCAGCAGACTTTCCTTTATCTCTGAGCAGACAAATCAGATGAAGACATTAGAGTCTCTGGACCTCAGCTTCAACTCCATCTACTTGGACCGGGACTGCTCTTGGCCTGCTCAGCTGACTGAACTAAGACTGGGAAACAACAACCTGGGCAACAGCATCTTTAAATACCTGTCCTCACACTTTGAGAGGATCGACTTGTCAAAGACGGGAATCACAGCCGTAACGCAGGAAATTCTGTCACGCTTTCCCAAGCTGACCCACCTCCAACTCAGCTTCAACAGCATCCAGGTCCTCCCTGCAGATCTCAGCGCCCCGGCGCTGCTCAGTCTCTACGTAGACCAGAATGCTATCACATCTGTATCCAGGGAGTTCTTAGCAGGACTTCCCAAACTTCAGACCCTCAAAGCTGGAAACAATCCATTCGTCTGCTCATGTGACTCTCATTGGTTCGTCACTACTCTGAACAAGTCCTTGCTCCCGGACTGGCCCTTAGATTATAAATGCAGCACCCCGCCATCTTTTGCAGGCCTGTCACTGTCCGAGTACAAAACCAGTGAACTGTCATGTGAGATGTGGCTTCAAACTGCAGTTGCTGTTCCTGTCGTAATAATGATATCTGCAGCCATTGGTCTGCTTTTCTATAAGTGCGACGGAGTGTGGTATACGAAGATGTTATGGGTGTGGATCAGGGTGAAGAGGAGAGGCAGGAAACGCTCCCACATGTTGAAGAATCTATCCTGTAGTTATCATGCATTCATCTCCTACAGTCACCAGGACTCTGGCTGGGTGGACAGCCAGCTGGTGCCCACTCTGGAAGGTGCCAGGTTTTCACTCTGCGTTCACGAGCGAGACTTCGTCCCCGGTGAGTGGATCATAGACAACATCATCAACTGTGTGGAGTCCAGCTACAAGACGCTGTTTGTCCTCTCCAAACACTTCGTCCAGAGCGAGTGGTGCAACTACGAGCTCTTCTTTGCCCAGCACAGAGCCATCAGTGTCCAGCAGGACTCTTTAGTCTTCATATTACTGGAGCCCATTCCGACTGACTCTCTGCCCAAAAAGTTCCTGAGACTTAGAAGTTTACTGAGGCAGCAGACGTACCTGGAGTGGCCAAAGGATGAACGGAAGCAGCAGGTTTTTTGGGCAAGTCTTAAATCCATGCTGCACACGGCAGACAAATCGATGGTTCTGAAGGATGTGGCTTTGGCCCTTTCAGATTCAGCACCTCTAGTTACAGACCAAGAGTAAAAGCTCAAAGGATAGcttctcatttttcttttttagatcgatctaagaaaaaaaacacccgcATGTAGACTCAAACAGTTTTTGGTTGCTGGAATTGTTACTACTGTTTATACTGGCCCTGAAGATACAGTATCTCTTCCTGCAATACCAATGTGAGTGATGGGGGTGGGCAGGGTCTGTGCAAAAATTTATTCCAAAGTTCAGCTGAGGCTAATACAAGGCTTCAGCAGTCTAATAACGATTTATCTTTTTAGTGTGAAAATGCCTCTTTGTGCATTCACAGACTGTTTCCTTGCTGTGCtgtggcagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtttgcttTGCTTTGAAAGGGATCTCTCAGCATAGCAGGATCCACTTATGTATACGTTACGTGCATTcttttctttgcatttttttttaatctttatttttgagtagctgttcttgtat

Function

NR:

description
PREDICTED: toll-like receptor 2 type-2

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791358.1 True 3094 mRNA 0.47 2 26216141 26219357

Neighbor

gene id symbol gene type direction distance location
il17ra1a NA coding upstream 57228 26145907 ~ 26158913 (+)
dera dera coding upstream 436526 25768737 ~ 25779615 (+)
hmga2 hmga2 coding upstream 462326 25695881 ~ 25753815 (+)
lemd3 lemd3,LOC104964688,LOC106576661 coding upstream 576051 25621443 ~ 25640090 (+)
tmbim4 tmbim4 coding upstream 601696 25608506 ~ 25614445 (+)
cnot4b NA coding downstream 3432 26222789 ~ 26253935 (+)
braf braf coding downstream 167458 26386815 ~ 26427044 (+)
aebp2 LOC103362558,LOC104950851 coding downstream 800005 27019362 ~ 27044417 (+)
ndufa5 ndufa5 coding downstream 826709 27046066 ~ 27051282 (+)
gpr22a gpr22,LOC103362561,LOC104950263 coding downstream 918689 27138046 ~ 27146791 (+)
G230555 NA non-coding upstream 14914 26200247 ~ 26201227 (+)
G230525 NA non-coding upstream 36125 26179543 ~ 26180016 (+)
G230521 NA non-coding upstream 41400 26173646 ~ 26174741 (+)
G230520 NA non-coding upstream 42547 26171388 ~ 26173594 (+)
G230510 NA non-coding upstream 89743 26126032 ~ 26126398 (+)
G230563 NA non-coding downstream 39568 26258925 ~ 26259131 (+)
G230597 NA non-coding downstream 163334 26382691 ~ 26383656 (+)
G230604 NA non-coding downstream 172281 26391638 ~ 26392178 (+)
G230600 NA non-coding downstream 209077 26428434 ~ 26432122 (+)
G230635 NA non-coding downstream 394595 26613952 ~ 26614172 (+)
arhgef39 arhgef39 other upstream 109318 26038188 ~ 26106823 (+)
LOC120553706 NA other upstream 403313 25810407 ~ 25812828 (+)
msrb3 msrb3 other upstream 553322 25641840 ~ 25662819 (+)
LOC120553523 NA other upstream 842145 25362882 ~ 25373996 (+)
G230148 LOC102781993,LOC101465723 other upstream 1437883 24620812 ~ 24778258 (+)
mrps33 mrps33,LOC106591474 other downstream 153357 26372714 ~ 26381109 (+)
LOC120553759 NA other downstream 473999 26693356 ~ 26971853 (+)
LOC120553194 NA other downstream 849720 27069077 ~ 27072552 (+)
G230842 NA other downstream 1383648 27603005 ~ 27603702 (+)
G230904 NA other downstream 1721964 27941321 ~ 27947473 (+)

Expression


Co-expression Network