LOC120553241


Basic Information

Item Value
gene id LOC120553241
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11941865 ~ 11957172 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791455.1
ATCAGGACACACCCACCCATCTTTGTAATAAAGCTTTTCTTCGAACTTCGCACAGTCAGTCGTTGCCCACTGCAAGTTCACGGAGAATAGACTGAGACCATGACTGAGGAAACAGCCACAGGCGCTCCTGCTGGAGTCTCGGAGCCAGATAAAGGGGCACCTGAGGAAGGGGTTCAGCCTAGGGGAAAATGGGCCAGCAACATGGAGTTTATATTCTCCATGGCTGGAGAAATCATTGGCCTCGGGAATGTTTGGCGTTTCCCATATCTGTGCTACAGGAATGGAGGAGGTGTCTTCCTCATCCCCTACTTTGTGTTCCTCTTCTTCTGTGGCATCCCTGTGTTCTTCCTGGAGACGGCATTGGGACAATACACCAGTGAGGGCGGGGTGACCGCCTGGAGGAAGATATGTCCCATGTCTGAGGGGGTGGGGATTGCGTCCCAAGTTATTGTGGTCTATCTGAACATCTATTATATCGTGGTGTTGGCCTGGGCTATCTTCTACCTGTATCAGTCCTTCAAAAGCCCGTTGCCCTGGTCCACATGTGACAACTGGTGGAACACTGAGGCATGTCACAGTCACTCTAGTGTCTTTTCCAACCCccatttgtttaaaaatggcTCCAACTGGTCGTTTCTGTACAACGTCACCTCACCACCTGACGACTTTGAGAATTTCAATTACACGAGTGAAATGGACCCTTTCCTGAAGGGCAGGTCACCGGAAGAGGAGTTCTGGATTAACCGCGTGTTAAGGATGTCAGATGACATGTCCCTGGGTAAGATAAACTGGGACCTGGCTGTGTGTCTCCTGCTTGCCTGGATAATGTGTTACTTCTGCATCTTTAAGGGAATCAAATCGTCAGGAAAGgTAGTTTACTTCACTGCTACATTCCCCTACCTGATGCTGTTGATCCTTTTTATCCGTGGAGTGACACTCCCAGGAGCTGGCGAGGGACTGAGATATTACCTCACTCCTGACTTCAGCAGGATCACTGATCCAGGTATATGGCGTGATGCAGGGACTCAAGTGTTCTTCTCCTTCGCCGTGTGTCAGGGAGTACTGACCGCTCTGGGCAGctacaacaaatacaacaacaacTGCTACAGGGATTGCTTGGCACTATGTTGCCTGAACAGTGCCACCAGTATCTTTGCTGGTTTTGCTGTGTTCTCAGTGCTGGGATTCATGGCTCACGACATGGGCGTACCGATGAGTGAAGTCGTTTCTAGTGGTCCTGGTCTGGTCTTTATAGTTTATCCAAGGGCTCTGTCGTGGCTGCCTGCCTCATCGTTCTGGGCTGTGCTCTTCTTCCTCATGGTCCTCTTCCTGGGCCTGGACACTCAGTTTGTGTGCGTGGAGAGCCTGGCCACAGCCATCACAGACATGTTCCCACGTCAGCTGAGGAGGCCGGGCAGCAGGGAGGTCCTGGCTCTGGTcattgctgcttcctgttttctACTGGGGCTGCCACTCATCTCTGAGGGAGGGATAGTCCTCTTCCGGCTGATTGACACCTACGGTCCCAGTGGAACCACTATCCTCATTATCGCCTGTTTTGAGACCACTGTCATTGCCTGGGTGTATGGTGCGGACCGTTTCTATGACAACATTAAGGACATGATCGGGTACCTACCATTCCCCGTGCTGAAGTACTGCTGGCTGTTCATCACGCCGCTCATCTGTGGGGTCACACTGGTGTATGACCTAACACAATCACAGAGTCTCACTGTGTACGGTTATAAACCCGGCATCTGGGGTGGCGTATTTGGAGCGCTACTTATCATCACTCCACTGATGTGCATCCCAGTATTCTTTTTTATCTCAATGTATAAGAATCGCCAAAAAATGACTACACCATCCAGTGATCTGCGTCAGGCTCAACCACACAAGCCAATTCTCACACTGTGTAACCACGTCATCTTCAAGGCACAGGTGAAGCCAAACAGACATGTGGAGGAAAACGACAAGATGGTGATGGGGGAACCCAGCATGGTTTGATGGTCACTGGTGAACAGACCTGCAGCAAATTAGTGCATAGATGTCATCAATTGAATTGTACAAATCtgtcacaacaaaaacacaaaaacatatatttttttcatcaaaTGCAAAATTGTATGAAAGTTTACATGTTTCATGAGTATTCAGggacagttgtgtttttttatgttgtgtttaattttTTGGTACGTTAGTGTTTACCTCATTTTTGGAATTAATAATAATGGAAAAGTCCCATGCAATATACATTTTTCTATACACCTATAATTCTATCTACTGTAAGTGGCTTACAAAAGTACTTCACTGATTAAGCATTTCACTCTCATACTGTAATACTGTGGGACTCTGAGTGGACAGAACCAGAAAtactcatctttttttttattccaagcATTGTCTTAATCCTCGTAAAAACCTGGCACCTACATTGCCCACAATGCAACCTGAATGCTGACAGTTTGGTCAAAAATGTTAGTGTGTTATGCTAGTAACGGCTAATGTAGCCTTGAGCTGCTAGCCTTAAAGCGAGATGAGGATCTGAGTACAGAGGTCTAGTCAGCTCACTCTTTCTTtcagattattttcattttcaaagctGTAGTTATCAAAACCC

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791455.1 True 2617 mRNA 0.47 16 11941865 11957172

Neighbor

gene id symbol gene type direction distance location
tmtc2a tmtc2 coding upstream 12399 11872547 ~ 11929466 (+)
mettl25 mettl25 coding upstream 77166 11852680 ~ 11864699 (+)
LOC120553244 LOC103365396,LOC108235086,LOC101484317,LOC107085982 coding upstream 104889 11826309 ~ 11836976 (+)
LOC120553760 NA coding upstream 119212 11812027 ~ 11822653 (+)
LOC120553761 NA coding upstream 119212 11815113 ~ 11822653 (+)
slc6a1l LOC103365402,LOC105916091 coding downstream 9298 11966470 ~ 11981128 (+)
atp2b1a atp2b1,LOC103370548 coding downstream 302897 12260069 ~ 12304375 (+)
mest mest coding downstream 351661 12308833 ~ 12316118 (+)
chchd3a LOC103366397 coding downstream 604178 12561350 ~ 12634881 (+)
klhdc10 klhdc10,LOC102781502 coding downstream 1119985 13077157 ~ 13082244 (+)
G227267 NA non-coding upstream 313922 11624235 ~ 11627943 (+)
G227251 NA non-coding upstream 481365 11460113 ~ 11460500 (+)
G227221 NA non-coding upstream 754083 11186939 ~ 11187782 (+)
LOC120553063 NA non-coding upstream 849191 11092190 ~ 11092674 (+)
G227217 NA non-coding upstream 887670 11043412 ~ 11054195 (+)
G227338 iqsec3 non-coding downstream 32928 11990100 ~ 11992952 (+)
G227363 NA non-coding downstream 286362 12243534 ~ 12243755 (+)
G227499 NA non-coding downstream 1030541 12987713 ~ 13043018 (+)
G227510 zc3hc1 non-coding downstream 1114373 13071545 ~ 13075348 (+)
G227639 NA non-coding downstream 1536229 13493401 ~ 13493861 (+)
G227278 LOC104928793 other upstream 184548 11689169 ~ 11757317 (+)
G227216 NA other upstream 828960 11102836 ~ 11112905 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other upstream 955664 10948285 ~ 10986201 (+)
G227141 dcn,LOC103382665 other upstream 1204362 10732069 ~ 10737503 (+)
G227121 kera other upstream 1242147 10697254 ~ 10699718 (+)
st8sia1 st8sia1 other downstream 149780 12106952 ~ 12126545 (+)
plxna4 plxna4 other downstream 702096 12659268 ~ 12910189 (+)
nrf1 nrf1,LOC103372774 other downstream 1048167 13005339 ~ 13022947 (+)
yeats4 yeats4 other downstream 1517377 13474549 ~ 13479115 (+)
LOC120553473 LOC102193240,LOC101463811,LOC103146510,LOC103459282,LOC106521789,LOC108235098 other downstream 1717632 13674804 ~ 13798380 (+)

Expression


Co-expression Network