ccdc59 (LOC104955171)


Basic Information

Item Value
gene id ccdc59
gene name LOC104955171
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11849064 ~ 11852957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791467.1
GTGTGAGCATTGGCGATGCTCAGAGTTATAGACAGAAAGCGCTTAACTTCATCTATTCGACGTTGAATTTCTGTGAGGCTGTATGAGGAGGACAACATATTAAACAGCTCTCCAAAGAAGGCCCGAGTGAAGCATATTTAACTGAAATGGCACCGACAGATCAAAAAATGAAGAATAAGAAGTTCACCGCGAAAGATGGCAACTGGAAGAAATCCCAAAATAACGCACAGGGTgtcaagaaaaagaagaaatgggTCCCCGAGCACAAAGTTTACGAAGGCAGTGTTAAGGAAGGTCAGGGGTTTGCTTTAAAGAGGAAGCAAAAAGTCCAACATGAGTACAACAAGCTGCTGCggaaggagaagaaaaagaatcCTGAGTCCAAAGCGCTGTACAAGGAGGAGTACCCAGAACACCTCAGGCATCTATACGTGGCCGAGGCAGAGAAACTGAAGAACGAGGCCTGGACCAATAGATTGAACAGGAGTAAGCTGAGAATGAAAGGGCAGGAGAAGGGAGAGGAGATAGATGACAACGATGATGATGaagctgatgctgctgctgatgctgatcCAGAAGTTACTGGTGGATCTGAGCAGACAGATTCTATAACTGGGAACCCTGAACTAACAGCAGCCTCCGAGAAAGACAGTCTTCCAATGAGCAACCGCATGAGGAAGAAAATGCTAAAGAAGACGTCCTACCAGAAGACAAAAGAGGAATTTGAATCAATCACAGAAAAacggaaaaagaagaaagagGAATACATTAAGAACAACAAGCAGAGAGAAGAAGCCATTCAGAAGTACAAACAGAAAAAGCTGGAGACGTTTCAGATGCTGAGCAAAAAGACCAAGAAAGGACAGCCCAATCTCAATCTCCAAATGGAGTATTTGCTTCAAAAGATCACACAAGGAACTGGGAAATGA
>XM_039791468.1
ATGGCACCGACAGATCAAAAAATGAAGAATAAGAAGTTCACCGCGAAAGATGGCAACTGGAAGAAATCCCAAAATAACGCACAGGGTgtcaagaaaaagaagaaatgggTCCCCGAGCACAAAGTTTACGAAGGCAGTGTTAAGGAAGGTCAGGGGTTTGCTTTAAAGAGGAAGCAAAAAGTCCAACATGAGTACAACAAGCTGCTGCggaaggagaagaaaaagaatcCTGAGTCCAAAGCGCTGTACAAGGAGGAGTACCCAGAACACCTCAGGCATCTATACGTGGCCGAGGCAGAGAAACTGAAGAACGAGGCCTGGACCAATAGATTGAACAGGAGTAAGCTGAGAATGAAAGGGCAGGAGAAGGGAGAGGAGATAGATGACAACGATGATGATGaagctgatgctgctgctgatgctgatcCAGAAGTTACTGGTGGATCTGAGCAGACAGATTCTATAACTGGGAACCCTGAACTAACAGCAGCCTCCGAGAAAGACAGTCTTCCAATGAGCAACCGCATGAGGAAGAAAATGCTAAAGAAGACGTCCTACCAGAAGACAAAAGAGGAATTTGAATCAATCACAGAAAAacggaaaaagaagaaagagGAATACATTAAGAACAACAAGCAGAGAGAAGAAGCCATTCAGAAGTACAAACAGAAAAAGCTGGAGACGTTTCAGATGCTGAGCAAAAAGACCAAGAAAGGACAGCCCAATCTCAATCTCCAAATGGAGTATTTGCTTCAAAAGATCACACAAGGAACTGGGAAATGACTCCCAAGTCAGAGCTGTAATAAAGAAAAGACTGGACCTTCACTTTGTTTGACtgtgctgttaaaaaaaaacctgaggACATTCAGGATTGTGCTTTTCACACTCTCTTCAGTGGTGCTTTATACGTCGAGTGGTAATCTCAAACCAGATTGTCTCTTTACTTTACTGTATTGCAGGTTTTCTTTTCCGGTATTTCGCCCCAGAATAGCACATTTTGTGGCTCATTTTAATCTCAGACCACCAGATGGCATTGTAAGACATGAAGAGATGGGAAAACATACTCATGTAAGATATTTTTGAATCAATAAATGTTTTAGCTTCC

Function

NR:

description
PREDICTED: thyroid transcription factor 1-associated protein 26 homolog

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791467.1 False 929 mRNA 0.44 5 11849386 11852957
XM_039791468.1 True 1105 mRNA 0.42 4 11849064 11852302

Neighbor

gene id symbol gene type direction distance location
tspan11 tspan11,LOC104963016,LOC100694590,LOC102793394 coding downstream 41397 11789195 ~ 11807667 (-)
LOC120553596 LOC104928793,LOC103358497,LOC104955051,LOC101485526 coding downstream 126129 11689127 ~ 11722935 (-)
cacna2d1a LOC103382776 coding downstream 244376 11503618 ~ 11604688 (-)
snd1 snd1 coding downstream 400622 11269994 ~ 11448442 (-)
LOC120553011 LOC104968093,LOC103355170 coding downstream 838959 10987010 ~ 11010105 (-)
LOC120553247 NA coding upstream 81171 11934128 ~ 11936367 (-)
LOC120553245 parp11,LOC103365400,LOC100707536,LOC107085973,LOC102790985,LOC101482593,LOC104955166 coding upstream 83457 11936414 ~ 11943239 (-)
iqsec3a iqsec3,LOC102789444,LOC102305902 coding upstream 129041 11981998 ~ 12083790 (-)
LOC120553762 LOC103374597,LOC102209562,LOC104923710,LOC101480655,LOC100694855 coding upstream 240581 12093538 ~ 12098305 (-)
copg2 copg2 coding upstream 463190 12316147 ~ 12325770 (-)
G227384 NA non-coding downstream 17387 11831029 ~ 11831677 (-)
G227314 NA non-coding downstream 26360 11812483 ~ 11822704 (-)
G227295 NA non-coding downstream 348150 11498844 ~ 11500914 (-)
G227248 NA non-coding downstream 581275 11267586 ~ 11267789 (-)
G227222 NA non-coding downstream 596209 11252624 ~ 11252855 (-)
LOC120553249 NA non-coding upstream 42686 11895643 ~ 11906820 (-)
LOC120553250 NA non-coding upstream 91373 11944330 ~ 11949201 (-)
G227407 NA non-coding upstream 113695 11966652 ~ 11969478 (-)
G227488 NA non-coding upstream 786477 12639434 ~ 12639775 (-)
LOC120553123 NA non-coding upstream 1047357 12900314 ~ 13004473 (-)
cracr2ab LOC102301749,LOC103365394 other downstream 123 11837248 ~ 11848941 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other downstream 172232 11617355 ~ 11676832 (-)
hgfa LOC103365344,LOC104958230 other downstream 366486 11458581 ~ 11482578 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other downstream 867805 10980198 ~ 10981259 (-)
G227082 anks1b other downstream 1326102 10513494 ~ 10522962 (-)
G227429 LOC104958361,LOC103370548 other upstream 431969 12284926 ~ 12288154 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other upstream 1185194 13038151 ~ 13066528 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other upstream 1273211 13126168 ~ 13344461 (-)
LOC120553407 napepld,LOC106940535 other upstream 1632929 13485886 ~ 13508247 (-)
LOC120553470 wnk1 other upstream 1663550 13516507 ~ 13617756 (-)

Expression


Co-expression Network