LOC120553267 (LOC103372592,LOC104942102)


Basic Information

Item Value
gene id LOC120553267
gene name LOC103372592,LOC104942102
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13121512 ~ 13125815 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791505.1
AGCCGGAAGTTAGGAGTATTTCCTTAGCTAGCTACTCATTCCTCATTCAGATGAATGCAAAACtggtattttgtttattttctagTCGTGTTTAAACTAAGAAATGGCGTGGAAAAACAAAGGTTTGGGTTCCCCTCTTCCTCCGGCCTCCTTACATCTCCTCGTCCCGCCAGTCAGACTAATGTCTGCTTTCATATGGAAAATAGTACAGCAGCACAGTGTGATGCAGTACGACAAGCTGGTGGACTTCATCTGTTTGGCGACAGAGATCGTCCCAGAGCTTCTGAGTCCCAGCCACAGAGCTCAGCTCATCCTGGGCCTGAGAGCAAGGCTGGTTCTGGAGCTGTGTCGTGGTGATGGCGTCGCCAACCTGCAGACCATCCAGAGTCACCTGGATAAGATTCACACCTGCAGCGCTGAACTGAGCTCCACTGATCAGATGGCCAATGGTGATATACTGAAGACCTCTTACACCAACTTTGCCAGCCTGGTTCAGAACATTTTGAATGTTCCTTTTGAAAAGGAGTTCTTCTTCCAAGAGGTGTTTCCTGCAAACTACGGCTCTAATTATGACCAAAGACTGCAGCAGCTGGTGTCTGAGTTCCTGTCCAGGCTGGAGCATCTGCTGCCCGTACCAGACCTGCAACAGACAGCAGCATGGCTCACAGAAACAACATCTGTGTCAGAAGAATTAGGACAGCATCTGTCTGAACCCTTTGCCCTGAAGACTCTGCTGCTTCATCACAGACAGTCAGGGACTCTCAGCTCTGCTCCTTCCAGCAGTGAGGGCGATATCGTTTTGTCCACTCTGGCCCTCCCTGCTCGATCTGGAGTGGAACGGTTTACTGAGTCTTACAGTGAGGATGATGATTATGACAATGAGGAAGAGACCCTGGCATCGGAATATTTAGAAGAAGACTCGAGTCGAAGCTCAGACGCCACTGCAGATGATTTGTTGCCAATTAGGGAATCAGGTCCTCTGTCGCGTTTATTCATCTGCCCTCAGTGTTCATTCGCTCACCTCCTGAAGAGAAAGGTCCAAGAGCACATCCAGAGTGAGCACCACATAGTAACTCCCATTCAGAAAAAACTATCTGTGAACAAAGCCAGAGCAAAGGCCCAGCAGAAAAGTAAAGACATGACCAGTGAAAAGAAGAACGTAGAAGGCAACTCCGGGATAAAGAGGAAACATAAACCAAAAAGCGGTGTTAGAAAAAAGCGTGAACGCAAGCAGAAGAAGGACAACTTAGAAAACAAGGAACGACGTAGACGGAAAGAGCCCACGGGGGACGACAAAAGGTTTCTGAGCACGCGACCTGTCAACAAAAACTTCACAGAGGAAGAAACCAAATGCCTGAAGTGTGAAAAGGTTTTTGAACTTCCAAATCAACTTAAGACTCACATGAAGCTTCACAGCTTTGCCTACAGCTGCACCCAATGTGAGAAGGGCTTCACCAGCTCGTCAGGTTATTATCAGCACCAGAGACTCCACAAGAGAGGACGGATATTCGTCTGCAGCCAGTGCAACAAGGGATTCCTGTGCAACTATTCGCTCAAGCAACATGAACGCCTGCATGAAGGCCCCAGCAACCTGTGTACGATCTGTGGGAAAGGGTTCAGCAAAGCAGGGATTACAAGACACATGCAGATGCACAAAGGGGAGAAGAATTACTTGTGCACCACATGTGGGAAGTCCTTTTTGTCCTCCGGGGAGCTGCTGCTGCACACTCGGTCCCACACGGGCGAGATGCCGTACACCTGCACACACTGCGGGAAGGGTTTCTCCAGCAAGAGTCACCTGATTGTGCACACGCGCTCTCACACGGGGGAGCGTCCATACCTGTGCTCGGAGTGCCCGAAGCGTTTCCTTACACTGAACTGCCTGAAAAGACACACGCTCAGCCACAATGGGGTGAAACCATTTAAGTGTCCAAACTGTGAGAAAGAATTTTCCCAGAAGGGGAACCTGAAAAGACATTTGGCAACTCATAAACTTGACACGTAACGTGAGGTTGTTAGAAAGGAGAATGTAGTCATAAATAATGCCTTGTCTAGTTTTTTTGAAAACCCCAAATGAAGTATTATTGTGTAATCCGTAGTAACAATTGGAAAGTAAAGTATTTGAAATTCCTCTTA
>XM_039791506.1
AGCCGGAAGTTAGGAGTATTTCCTTAGCTAGCTACTCATTCCTCATTCAGATGAATGCAAAACtggtattttgtttattttctagTCGTGTTTAAACTAAGAAATGGCGTGGAAAAACAAAGGTTCCCCTCTTCCTCCGGCCTCCTTACATCTCCTCGTCCCGCCAGTCAGACTAATGTCTGCTTTCATATGGAAAATAGTACAGCAGCACAGTGTGATGCAGTACGACAAGCTGGTGGACTTCATCTGTTTGGCGACAGAGATCGTCCCAGAGCTTCTGAGTCCCAGCCACAGAGCTCAGCTCATCCTGGGCCTGAGAGCAAGGCTGGTTCTGGAGCTGTGTCGTGGTGATGGCGTCGCCAACCTGCAGACCATCCAGAGTCACCTGGATAAGATTCACACCTGCAGCGCTGAACTGAGCTCCACTGATCAGATGGCCAATGGTGATATACTGAAGACCTCTTACACCAACTTTGCCAGCCTGGTTCAGAACATTTTGAATGTTCCTTTTGAAAAGGAGTTCTTCTTCCAAGAGGTGTTTCCTGCAAACTACGGCTCTAATTATGACCAAAGACTGCAGCAGCTGGTGTCTGAGTTCCTGTCCAGGCTGGAGCATCTGCTGCCCGTACCAGACCTGCAACAGACAGCAGCATGGCTCACAGAAACAACATCTGTGTCAGAAGAATTAGGACAGCATCTGTCTGAACCCTTTGCCCTGAAGACTCTGCTGCTTCATCACAGACAGTCAGGGACTCTCAGCTCTGCTCCTTCCAGCAGTGAGGGCGATATCGTTTTGTCCACTCTGGCCCTCCCTGCTCGATCTGGAGTGGAACGGTTTACTGAGTCTTACAGTGAGGATGATGATTATGACAATGAGGAAGAGACCCTGGCATCGGAATATTTAGAAGAAGACTCGAGTCGAAGCTCAGACGCCACTGCAGATGATTTGTTGCCAATTAGGGAATCAGGTCCTCTGTCGCGTTTATTCATCTGCCCTCAGTGTTCATTCGCTCACCTCCTGAAGAGAAAGGTCCAAGAGCACATCCAGAGTGAGCACCACATAGTAACTCCCATTCAGAAAAAACTATCTGTGAACAAAGCCAGAGCAAAGGCCCAGCAGAAAAGTAAAGACATGACCAGTGAAAAGAAGAACGTAGAAGGCAACTCCGGGATAAAGAGGAAACATAAACCAAAAAGCGGTGTTAGAAAAAAGCGTGAACGCAAGCAGAAGAAGGACAACTTAGAAAACAAGGAACGACGTAGACGGAAAGAGCCCACGGGGGACGACAAAAGGTTTCTGAGCACGCGACCTGTCAACAAAAACTTCACAGAGGAAGAAACCAAATGCCTGAAGTGTGAAAAGGTTTTTGAACTTCCAAATCAACTTAAGACTCACATGAAGCTTCACAGCTTTGCCTACAGCTGCACCCAATGTGAGAAGGGCTTCACCAGCTCGTCAGGTTATTATCAGCACCAGAGACTCCACAAGAGAGGACGGATATTCGTCTGCAGCCAGTGCAACAAGGGATTCCTGTGCAACTATTCGCTCAAGCAACATGAACGCCTGCATGAAGGCCCCAGCAACCTGTGTACGATCTGTGGGAAAGGGTTCAGCAAAGCAGGGATTACAAGACACATGCAGATGCACAAAGGGGAGAAGAATTACTTGTGCACCACATGTGGGAAGTCCTTTTTGTCCTCCGGGGAGCTGCTGCTGCACACTCGGTCCCACACGGGCGAGATGCCGTACACCTGCACACACTGCGGGAAGGGTTTCTCCAGCAAGAGTCACCTGATTGTGCACACGCGCTCTCACACGGGGGAGCGTCCATACCTGTGCTCGGAGTGCCCGAAGCGTTTCCTTACACTGAACTGCCTGAAAAGACACACGCTCAGCCACAATGGGGTGAAACCATTTAAGTGTCCAAACTGTGAGAAAGAATTTTCCCAGAAGGGGAACCTGAAAAGACATTTGGCAACTCATAAACTTGACACGTAACGTGAGGTTGTTAGAAAGGAGAATGTAGTCATAAATAATGCCTTGTCTAGTTTTTTTGAAAACCCCAAATGAAGTATTATTGTGTAATCCGTAGTAACAATTGGAAAGTAAAGTATTTGAAATTCCTCTTA

Function

NR:

description
PREDICTED: zinc finger protein 2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791505.1 True 2136 mRNA 0.48 8 13121512 13125815
XM_039791506.1 False 2130 mRNA 0.48 8 13121512 13125815

Neighbor

gene id symbol gene type direction distance location
klhdc10 klhdc10,LOC102781502 coding upstream 39268 13077157 ~ 13082244 (+)
chchd3a LOC103366397 coding upstream 486631 12561350 ~ 12634881 (+)
mest mest coding upstream 805394 12308833 ~ 12316118 (+)
atp2b1a atp2b1,LOC103370548 coding upstream 817137 12260069 ~ 12304375 (+)
slc6a1l LOC103365402,LOC105916091 coding upstream 1140384 11966470 ~ 11981128 (+)
dcp1b LOC106595781 coding downstream 213244 13339059 ~ 13353840 (+)
cacna2d4a cacna2d4,LOC102201998 coding downstream 233072 13358887 ~ 13443536 (+)
cpsf6 cpsf6 coding downstream 318769 13444584 ~ 13474258 (+)
napepld NA coding downstream 353912 13479727 ~ 13490419 (+)
LOC120553484 ninj2,LOC103459309,LOC106521792 coding downstream 505136 13630951 ~ 13659234 (+)
G227510 zc3hc1 non-coding upstream 46164 13071545 ~ 13075348 (+)
G227499 NA non-coding upstream 78494 12987713 ~ 13043018 (+)
G227363 NA non-coding upstream 877757 12243534 ~ 12243755 (+)
G227338 iqsec3 non-coding upstream 1128560 11990100 ~ 11992952 (+)
G227267 NA non-coding upstream 1493569 11624235 ~ 11627943 (+)
G227639 NA non-coding downstream 367586 13493401 ~ 13493861 (+)
G227646 NA non-coding downstream 390667 13516482 ~ 13531547 (+)
G227662 NA non-coding downstream 428435 13554250 ~ 13554826 (+)
G227734 NA non-coding downstream 830882 13956697 ~ 13965492 (+)
G227736 phtf2 non-coding downstream 841728 13967543 ~ 13969687 (+)
nrf1 nrf1,LOC103372774 other upstream 98565 13005339 ~ 13022947 (+)
plxna4 plxna4 other upstream 211323 12659268 ~ 12910189 (+)
st8sia1 st8sia1 other upstream 994967 12106952 ~ 12126545 (+)
G227278 LOC104928793 other upstream 1364195 11689169 ~ 11757317 (+)
G227216 NA other upstream 2008607 11102836 ~ 11112905 (+)
yeats4 yeats4 other downstream 348734 13474549 ~ 13479115 (+)
LOC120553473 LOC102193240,LOC101463811,LOC103146510,LOC103459282,LOC106521789,LOC108235098 other downstream 548989 13674804 ~ 13798380 (+)
trnak-cuu_11 NA other downstream 643240 13769055 ~ 13769127 (+)
trnal-caa_20 NA other downstream 644251 13770066 ~ 13770177 (+)
trnak-cuu_12 NA other downstream 649172 13774987 ~ 13775059 (+)

Expression


Co-expression Network