washc3 (ccdc53)


Basic Information

Item Value
gene id washc3
gene name ccdc53
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8802548 ~ 8807170 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791532.1
CGTGACGTCAAGACACGACCACGCAGTCCGGAGTCACGTGAAACGTTTCACTGCAGGTTTATGCACCGCTTTCCTGTCATTTTGCAGTGAAAATACTTTGCATTAGTACTGAAACGGCTCTGTAATCTGCAGGAAGTTTAAAATCCCAACATGGACGAGGACGGGCTGCCGATTGTGGGTTCTGGTGTCGATCTTACCAAGGTCCCTGCTATTCAACAGAGAAGAGTTGTTGCCTATCTCAATCAGTTTGTTGTGCACACGGTCCGGTTCCTTAACCGTTTCTCCACAGTTTGTGAAGAGAAACTTGCAAACATATCTCTTCGCATACAGCAGATTGAAACGACCCTGTGCATTCTGGAAGCCAAGCTGTCCTCCATTCCTGGGCTGGAGGACGTCACAATAGATGGACTCAGTCAGCGGCAACCTGCTCAGGCCAATGGACCCACTACTGCCAGTCAGAACCAAACAGATGGTCCACCAGCAGGGAGCCTGCCTCCCCCACAGCCCGCTCAGACTACACCAGAGGCTGCAATGCCACCAAAAGCAGAAGCAGCTGCAGAGAATGTCATGACAGTGGCCAAGGACCCACGTTATGCCCGATACCTGAAAATGGTTCAAGTGGGAGTTCCAGTTATGGCTATAAAGAATAAAATGGTCCTGGAGGGTTTGGATCCTAACTTGCTTGACACACCAGACGCCCCCGTGCCTGATAGAGGAGCGAGGAGCGCTGAGGATCAAGACGCTGATGTCACCAGCTCTGACAGCGAATCATCTTTCAGTGACTGACATCCGTCCCCATCACCCACAGAGGTTCCTGTAAAGGCCGTCCATCGCTACTCTGAGCTTCTGTAGGCCTGTTACTGAGAAGGCGATGTAGGTTGCAGTGTGTGCCTGTAAGTGAGTGCCAGCGAGAAGGTGCAAATGTAAGTGCCTGAAACAGGAAACTCCAAGCAGAGTGATTGTAATTTCAGTGGTAAAAGCGTTGAAATAGTTTTGCTTACAATCGGTCAGTGACCTCCTCTGTTTTGATACATTTAGCATTTTTGACTAATTCAAAAAGAGGGAATAATTATCCCTGTTGATTATGTTAGTCATCAGAACATGGCAgtagcaagtttttttttttgttttcttttttttacaaaaaagtgtAGAACTTATTGCTCTTCTCTTTGGTTATCACACTACTATCTCAGTCTAATGCCTTTTAAGAGATGCACTCGTCAGTTGAAAGTTATTCAAAAATGTATGTGGGATACTTTGACTGtttaacatatacagtacattgtaaTTCTGTGTGTTAAGACCAGGGAGAAAAATATCACAACAGTCTTTCAGTGACGATCTATTGTATATCATAATACCAGTTAAATAGGAAGGAAAATCA

Function

symbol description
ccdc53 Involved in nuclear envelope budding and positive regulation of cell adhesion. Located in nucleoplasm. Part of WASH complex. Colocalizes with nuclear envelope. Is expressed in organism. Orthologous to human WASHC3 (WASH complex subunit 3).

NR:

description
PREDICTED: WASH complex subunit CCDC53

GO:

id name namespace
GO:0071203 WASH complex cellular_component

KEGG:

id description
K18463 CCDC53; WASH complex subunit CCDC53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791532.1 True 1387 mRNA 0.45 7 8802548 8807170

Neighbor

gene id symbol gene type direction distance location
acss3 acss3 coding upstream 237193 8515588 ~ 8565355 (+)
myf5 myf5 coding upstream 331514 8468661 ~ 8471034 (+)
myf6 myf6 coding upstream 338454 8462324 ~ 8464094 (+)
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding upstream 789737 7978077 ~ 8012811 (+)
tnnt2c LOC102777397 coding upstream 905065 7895545 ~ 7897483 (+)
gnptab gnptab coding downstream 11400 8818570 ~ 8845025 (+)
atp6v1e1b LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460 coding downstream 111064 8918234 ~ 8926796 (+)
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding downstream 119902 8927072 ~ 8932977 (+)
LOC120553653 fgf6,LOC100708453,LOC101478942,LOC103358103 coding downstream 199388 9006558 ~ 9010187 (+)
fgf23 fgf23 coding downstream 209916 9017086 ~ 9020129 (+)
LOC120553277 NA non-coding upstream 182053 8617814 ~ 8620495 (+)
G226554 NA non-coding upstream 393889 8341630 ~ 8408659 (+)
G226556 ppp1r12a non-coding upstream 443266 8356330 ~ 8359282 (+)
G226515 NA non-coding upstream 495720 8260333 ~ 8306828 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding upstream 744931 8047779 ~ 8057617 (+)
G226638 NA non-coding downstream 62848 8870018 ~ 8870711 (+)
G226641 mybpc1 non-coding downstream 74647 8881817 ~ 8883677 (+)
G226720 NA non-coding downstream 127880 8935050 ~ 8935551 (+)
LOC120553611 NA non-coding downstream 134671 8941841 ~ 8943537 (+)
G226716 NA non-coding downstream 204972 9012142 ~ 9012662 (+)
rps16 rps16,LOC103382554 other upstream 369851 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 1233245 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 1270471 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1376294 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1402149 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 327424 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 430056 9237226 ~ 9241349 (+)
G227121 kera other downstream 1890084 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 1924899 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 2141115 10948285 ~ 10986201 (+)

Expression


Co-expression Network