gnptab (gnptab)


Basic Information

Item Value
gene id gnptab
gene name gnptab
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8818570 ~ 8845025 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791533.1
AGAAGCAGCATGGCTGAAGAACAGCAGCGTCACCACCACAGAAGAAGCGTGCAATGTGTGATCGTTATGTGTCATGCAGTCTGGCTGGTGGTCAGCTGACAGATCTGAGTCTCCTGTGATGTTTACTTTCTTTGTTTAGTGCGTTAAACCtgcgttgttgttttttttttttgaatgaatgaaGCGGTATGCTTCGATAAGGAGAACCATGGTAGTCGTCAACTCGGTGCTCAAGCTGTTGCAGAGGCAGACGTACACCTGTCTGTCCCATCGCTACGGGCTGTACCTCTGCTTTGGGGGGATCGTCCTCATGATAGTTTCTGCCTTTCAGTTCGGAGAGGTGGTGGTTGAGTGGAGTCGGGACCAGTATCATGTGCTGTTTGACTCCTACAGAGACAATGTAGGTGGGAAATCATTCCAAAGCAGACTCTGTCTCCCCATGCCTATTGATGTAGTGTACACATGGGTGAACGGCACAGACATGGCTCTGCTGAAGGAACTGAAGACGGTCAAAGAGCAACTGGAGGAGGAACACAGGGCTCTGAGGGAACGCCTGGGGAAAAATGCAAGTGAGACAACTGAATTGCCAAAAGAGAGtgttAAGCCAGAATGCCTGCTGTCCCACTGCATCATAGCGCCCATGCTGGCCCTGGACCCGGCTCTGCCAGCCAACATCACGCTCAAAGAGCTACCGTCACTCTCGGCGTCCTTCTCGGCTGCCAAAGAGCTGCTGCTGATGAACAAACCCTTCCACCCGTCCACCACCGTCTCTGTCGTTGTCTTCCATTCGCAGGCTGAAGctgaTAAAGCCTATACAGATGTGTTAAGGGAAGACCAGAAAGTCTCTGTGTCCAGATGTTACCTGaCGACAGATAAAGAGGCTCCGGGTCTGATCCGCATGCAGTCTCTGGCCTACCTCAGCGGCTTCCCGGCTTCCTTTAAAGAAACGGAGCAGCTGAGAGTCAAACTGCCCTCTGTCATAACCAATAAGATCAAACAGTTTGAGTTATACTCTGAGGCCAGCATCGTCCTGCTCCACCTGAAAAGCCCGCAGGATTTCACTGATCTGACCCAGCAGGCTAAAAAGAACCTGACCCTGGATGGAAAAGAGTTAACCATCAGCCCTGGCTATTTGTTCTGGGACCTCACTGCCATCTCACAGTCCAAACAGGATGAAGATGTTTCCGCCAGCAGATTTGAGGACAACGAGGAGCTCCGCTATTCGCTGCGCTCTGTGGAGAGACACGCCCCCTGGGTGCGACACATCTTCATAGTTACTAACGGGCAGATTCCCTCCTGGCTTAACCTGGATAACCCCAGAGTTACAGTTGTCACACATCAGGATATCTTCCTGAACGACAGCCACCTTCCCACTTTCAGCTCCCCTGCCATAGAGACCCACATGCACCGCATCCCAGGGCTCTCCCAAAAGTTCATTTACCTcaatgatgatgtgatgtttggcagagaTGTCTGGCCAGATGACTTCTACAGCCACTCAAAAGGACAGAAGGTGTATCTCACCTGGCCTGTCCCCAACTGTGCTGAGGGCTGCCCAGGATCTTGGATCAAAGATGGGTACTGTGACAAAGCCTGCAACAACTCTGCCTGTGACTGGGATGGAGGGGACTGCCTCGGTGCAGCGGGGAGCAGTCGGTTTGTGGCTGGGGTCGGTGGTGGCGGACCGGGAGCTGCTGCGCAGATGTGGCAGTTTGCAGGTGGCCTCGGAGGTCTAGGGGGGACGTCGTACTGTAATCAAGGCTGTGCCAACTCCTGGCTGGCAGACAAGTTCTGTGACCAGGCCTGCAATGTTCTCTCTTGTGGTTTTGATGTGGGAGACTGTGGCCAAGAGCACTTTGGCGAGCTGCACCACGTGACCCTGCTGAGGGATCAGAGTCTGTACACCCTCCCAGTAGGTGAAACCAGGCCATATTTCAGCTTCGACGGACTGGCTCACAGAGTCTCCGAGGCCCACGTCAGCGACAACCCGGCGCTTCGCCACACCTCCGTCGCCAACAAGTGGAAGACCGTTCACCTGCTGCTCCATCCGGGCCACAACGCCACCCAGATCCAGTACAATCTCACTTTCCAGAGAGAAGACCAAACCGAGTTCATAATGAGCTTCAGCGTAGCGGTCGACACCCGCGAGGTGCCCCAGGCCAATGTGTCCCAGTCTGCTAGCAAAGACGCCGGCAAAGTGCCGAAGCCGACGCCGACACCGGAGCCGCTGGTCCCATTCTCGGACGTTCCTGAGGACAAACGGGGCCCTAAGATCCAGAAGAGGCCGCCTGGTGAACCTCAGGTTGTCATAGAAGTGCCTTCGCTTAATGTGTCCCTTCTACCAGCCGCTGTGCAAAGTGAGCTGCAAAGGCTGGAGGAGAAGCTTCTGATCGGTGACATCACCATGAAGGGCTATAACCTCACAAAGGCTGAGCTTCTAAAACCTTACGCGACACTGGCTCAAAAGCAGCAGGTTGTCAGTTCAAATCCGGCTAATGAGGGGGCAGCCAAGGGCCAGGGAAAGCCCTACAAAGACTTGGAGGGAGAGCAGTTGGAAGGGAAAGCACCCGTGGAAGAGAAAGCTGGAAATATCGTTCAGGAAAATCCAAACTCAAAAGAAGAAATGTCCATGTCCAAATGGAAAGACGCGGCTGTGCAGGAAAAACCTGTCACTCCTCTAATCGCAGTCCACATTGATGATAAGCACGAGAAAGACTTTGTAACTCCCAAACATTATAATTTGAATGCTGCGATCGAGAGGCCTATGACTTCCAAACTGCTAAGCAGCATTTCAAAAACCAAGAGCGCCAAGAGTCAGGCAGAGCCAGCAGACGCCGCAGGACCAgctccagtcgggaggagactGCAACACTTCATCTCCGCAGACAGAGGCTTCCTGCCGTGGGAGAGGAGGAAATACTTCCAGGAAGTGCTTGAGGAAGAAGAACGTCTGCAGAGAGAGTTGTCGTATGAGACTGACGGTGGCGCCACTGGCCGAAGGCTGCAGGACACTTTTGCTGACTCGCTGCGCTACGTCAACAAGCTGCTCAACGGCGAGTTTGGATTCACGTCGCGCAAAGTACCTGCACACATGCCTCACATGATCGACCGTCTCATCATGCAGGAGCTGCAGGACACATTCCCAGAGGAGTTTGACAAGACATCAGGCCATCGTGTTCGTCACCCAGAGGACATGCAGTTTGCCTTTTCGTACTTCTACTTTCTGATGAGTGCTCAGCAGCAGCTCAACGTGTCCGAGGTGTTTGACCAGATCGACACAGACCACTCAGGCGTCCTGTCCGACCGGGAGATTCGAACTCTCGCTACAAGAATCCACGAGCTGCCCCTCAGCCTCCAGGACCTGACAGGCCTGGAGCAGATGTTTATAAACTGCTCTAAGACTCTCCCGACTAATCTGACCCAGCTCCACCTGGTGAACCCAACTCAGGAGGCCTACTACGACCCCAGCATGCCTCCTGTCACAAAAGGCCTTGTCCTCCACTGCAAGCCCATTACAGAACGCATCCAGAAAGCCTTCAGAGACCAGAATAAGTATAAGTTTGAGATCATGGGAGAGGAGGAGATAGCTTTCAAGATGGTGCGGACAAATGTGTCCCATGTGGTCGGCCAGTTAGATGACATTAGGAAGAATCCCAGGAAGTTCATCTGTCTGAATGATAACATCGACCACAGCCATAAGGACGCTGCCACAGTGAAAGCTGTGCTGAGAGATTTTTATGAATCCATGTTCCCGCTGCCGTCCCAGTTTGAACTGCCAAGAGAGTATCGCAACAGATTCCTGCATATGGACGAGCTCCAGGAGTGgAGAGTGTATCGGGACAAGCTGAAGTTCTGGACGCACTGTGTCCTCGTGACACTCGTCGTCTTCACCATCCTGTCCTTCTTTGCCGAACAGCTGATTCTGCTAAAGCGAAAGCTGTTCCCGAGACGCAGGGTGAACACGGACAGCAACCCTGAGCGGGTGTGAAAGAAAGCTGgtcttccctctcctctctgcactTCAGCACCCTCCACCCTTTCTCTCCTGCTCAGTAGAGAGGATTCAGACCGGGGGACTGGGTGGAAACGGGAATCTGAAGTCCTCTGTGCTTGTGTTGCATCAGCACAGACACAGGATAGAGACTCATGTGAGATGGTGATGAAACATTTTTCATAAGATGATGGATGGGGCTGGCCGGTGAAAGGAATGGCAGCCAGGAAGAAGAAGCCTGTAATTCTTCGATTCCTCGACTGGGGGCATCTGGGACTTTTGTACAACACACACTCCTGCacgtacacaaacaaacactccCTCCATACTGCACCACCCTCACCATGTCATTGATTGATGTGCTGTTAAAGTGTAAAGCATTTGGCAGCAGCACGCCCGgacagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>XM_039791534.1
AGAAGCAGCATGGCTGAAGAACAGCAGCGTCACCACCACAGAAGAAGCGTGCAATGTGTGATCGTTATGTGTCATGCAGTCTGGCTGGTGGTCAGCTGACAGATCTGAGTCTCCTGTGATGTTTACTTTCTTTGTTTAGTGCGTTAAACCtgcgttgttgttttttttttttgaatgaatgaaGCGGTATGCTTCGATAAGGAGAACCATGGTAGTCGTCAACTCGGTGCTCAAGCTGTTGCAGAGGCAGACGTACACCTGTCTGTCCCATCGCTACGGGCTGTACCTCTGCTTTGGGGGGATCGTCCTCATGATAGTTTCTGCCTTTCAGTTCGGAGAGGTGGTGGTTGAGTGGAGTCGGGACCAGTATCATGTGCTGTTTGACTCCTACAGAGACAATGTAGGTGGGAAATCATTCCAAAGCAGACTCTGTCTCCCCATGCCTATTGATGTAGTGTACACATGGGTGAACGGCACAGACATGGCTCTGCTGAAGGAACTGAAGACGGTCAAAGAGCAACTGGAGGAGGAACACAGGGCTCTGAGGGAACGCCTGGGGAAAAATGCAAGTGAGACAACTGAATTGCCAAAAGAGAGtgttAAGCCAGAATGCCTGCTGTCCCACTGCATCATAGCGCCCATGCTGGCCCTGGACCCGGCTCTGCCAGCCAACATCACGCTCAAAGAGCTACCGTCACTCTCGGCGTCCTTCTCGGCTGCCAAAGAGCTGCTGCTGATGAACAAACCCTTCCACCCGTCCACCACCGTCTCTGTCGTTGTCTTCCATTCGCAGGCTGAAGctgaTAAAGCCTATACAGATGTGTTAAGGGAAGACCAGAAAGTCTCTGTGTCCAGATGTTACCTGaCGACAGATAAAGAGGCTCCGGGTCTGATCCGCATGCAGTCTCTGGCCTACCTCAGCGGCTTCCCGGCTTCCTTTAAAGAAACGGAGCAGCTGAGAGTCAAACTGCCCTCTGTCATAACCAATAAGATCAAACAGTTTGAGTTATACTCTGAGGCCAGCATCGTCCTGCTCCACCTGAAAAGCCCGCAGGATTTCACTGATCTGACCCAGCAGGCTAAAAAGAACCTGACCCTGGATGGAAAAGAGTTAACCATCAGCCCTGGCTATTTGTTCTGGGACCTCACTGCCATCTCACAGTCCAAACAGGATGAAGATGTTTCCGCCAGCAGATTTGAGGACAACGAGGAGCTCCGCTATTCGCTGCGCTCTGTGGAGAGACACGCCCCCTGGGTGCGACACATCTTCATAGTTACTAACGGGCAGATTCCCTCCTGGCTTAACCTGGATAACCCCAGAGTTACAGTTGTCACACATCAGGATATCTTCCTGAACGACAGCCACCTTCCCACTTTCAGCTCCCCTGCCATAGAGACCCACATGCACCGCATCCCAGGGCTCTCCCAAAAGTTCATTTACCTcaatgatgatgtgatgtttggcagagaTGTCTGGCCAGATGACTTCTACAGCCACTCAAAAGGACAGAAGGTGTATCTCACCTGGCCTGTCCCCAACTGTGCTGAGGGCTGCCCAGGATCTTGGATCAAAGATGGGTACTGTGACAAAGCCTGCAACAACTCTGCCTGTGACTGGGATGGAGGGGACTGCCTCGGTGCAGCGGGGAGCAGTCGGTTTGTGGCTGGGGTCGGTGGTGGCGGACCGGGAGCTGCTGCGCAGATGTGGCAGTTTGCAGGTGGCCTCGGAGGTCTAGGGGGGACGTCGTACTGTAATCAAGGCTGTGCCAACTCCTGGCTGGCAGACAAGTTCTGTGACCAGGCCTGCAATGTTCTCTCTTGTGGTTTTGATGTGGGAGACTGTGGCCAAGAGCACTTTGGCGAGCTGCACCACGTGACCCTGCTGAGGGATCAGAGTCTGTACACCCTCCCAGTAGGTGAAACCAGGCCATATTTCAGCTTCGACGGACTGGCTCACAGAGTCTCCGAGGCCCACGTCAGCGACAACCCGGCGCTTCGCCACACCTCCGTCGCCAACAAGTGGAAGACCGTTCACCTGCTGCTCCATCCGGGCCACAACGCCACCCAGATCCAGTACAATCTCACTTTCCAGAGAGAAGACCAAACCGAGTTCATAATGAGCTTCAGCGTAGCGGTCGACACCCGCGAGGTGCCCCAGGCCAATGTGTCCCAGTCTGCTAGCAAAGACGCCGGCAAAGTGCCGAAGCCGACGCCGACACCGGAGCCGCTGGTCCCATTCTCGGACGTTCCTGAGGACAAACGGGGCCCTAAGATCCAGAAGAGGCCGCCTGGTGAACCTCAGGTTGTCATAGAAGTGCCTTCGCTTAATGTGTCCCTTCTACCAGCCGCTGTGCAAAGTGAGCTGCAAAGGCTGGAGGAGAAGCTTCTGATCGGTGACATCACCATGAAGGGCTATAACCTCACAAAGGCTGAGCTTCTAAAACCTTACGCGACACTGGCTCAAAAGCAGCAGGTTGTCAGTTCAAATCCGGCTAATGAGGGGGCAGCCAAGGGCCAGGGAAAGCCCTACAAAGACTTGGAGGGAGAGCAGTTGGAAGGGAAAGCACCCGTGGAAGAGAAAGCTGGAAATATCGTTCAGGAAAATCCAAACTCAAAAGAAGAAATGTCCATGTCCAAATGGAAAGACGCGGCTGTGCAGGAAAAACCTGTCACTCCTCTAATCGCAGTCCACATTGATGATAAGCACGAGAAAGACTTTGTAACTCCCAAACATTATAATTTGAATGCTGCGATCGAGAGGCCTATGACTTCCAAACTGCTAAGCAGCATTTCAAAAACCAAGAGCGCCAAGAGTCAGGCAGAGCCAGCAGACGCCGCAGGACCAgctccagtcgggaggagactGCAACACTTCATCTCCGCAGACAGAGGCTTCCTGCCGTGGGAGAGGAGGAAATACTTCCAGGAAGTGCTTGAGGAAGAAGAACGTCTGCAGAGAGAGTTGTCGTATGAGACTGACGGTGGCGCCACTGGCCGAAGGCTGCAGGACACTTTTGCTGACTCGCTGCGCTACGTCAACAAGCTGCTCAACGGCGAGTTTGGATTCACGTCGCGCAAAGTACCTGCACACATGCCTCACATGATCGACCGTCTCATCATGCAGGAGCTGCAGGACACATTCCCAGAGGAGTTTGACAAGACATCAGGCCATCGTGTTCGTCACCCAGAGGACATGCAGTTTGCCTTTTCGTACTTCTACTTTCTGATGAGTGCTCAGCAGCAGCTCAACGTGTCCGAGGTGTTTGACCAGATCGACACAGACCACTCAGGCGTCCTGTCCGACCGGGAGATTCGAACTCTCGCTACAAGAATCCACGAGCTGCCCCTCAGCCTCCAGGACCTGACAGGCCTGGAGCAGATGTTTATAAACTGCTCTAAGACTCTCCCGACTAATCTGACCCAGCTCCACCTGGTGAACCCAACTCAGGAGGCCTACTACGACCCCAGCATGCCTCCTGTCACAAAAGGCCTTGTCCTCCACTGCAAGCCCATTACAGAACGCATCCAGAAAGCCTTCAGAGACCAGAATAAGTTTGAGATCATGGGAGAGGAGGAGATAGCTTTCAAGATGGTGCGGACAAATGTGTCCCATGTGGTCGGCCAGTTAGATGACATTAGGAAGAATCCCAGGAAGTTCATCTGTCTGAATGATAACATCGACCACAGCCATAAGGACGCTGCCACAGTGAAAGCTGTGCTGAGAGATTTTTATGAATCCATGTTCCCGCTGCCGTCCCAGTTTGAACTGCCAAGAGAGTATCGCAACAGATTCCTGCATATGGACGAGCTCCAGGAGTGgAGAGTGTATCGGGACAAGCTGAAGTTCTGGACGCACTGTGTCCTCGTGACACTCGTCGTCTTCACCATCCTGTCCTTCTTTGCCGAACAGCTGATTCTGCTAAAGCGAAAGCTGTTCCCGAGACGCAGGGTGAACACGGACAGCAACCCTGAGCGGGTGTGAAAGAAAGCTGgtcttccctctcctctctgcactTCAGCACCCTCCACCCTTTCTCTCCTGCTCAGTAGAGAGGATTCAGACCGGGGGACTGGGTGGAAACGGGAATCTGAAGTCCTCTGTGCTTGTGTTGCATCAGCACAGACACAGGATAGAGACTCATGTGAGATGGTGATGAAACATTTTTCATAAGATGATGGATGGGGCTGGCCGGTGAAAGGAATGGCAGCCAGGAAGAAGAAGCCTGTAATTCTTCGATTCCTCGACTGGGGGCATCTGGGACTTTTGTACAACACACACTCCTGCacgtacacaaacaaacactccCTCCATACTGCACCACCCTCACCATGTCATTGATTGATGTGCTGTTAAAGTGTAAAGCATTTGGCAGCAGCACGCCCGgacagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
gnptab Enables UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity. Involved in N-glycan processing to lysosome. Acts upstream of or within bone development; chondrocyte development; and embryonic viscerocranium morphogenesis. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Used to study mucolipidosis II alpha/beta. Human ortholog(s) of this gene implicated in mucolipidosis II alpha/beta and mucolipidosis III alpha/beta. Orthologous to human GNPTAB (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta).

NR:

description
N-acetylglucosamine-1-phosphotransferase subunits alpha/beta-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K08239 GNPTAB; UDP-N-acetylglucosamine-lysosomal-enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791533.1 True 4483 mRNA 0.53 21 8818570 8845025
XM_039791534.1 False 4477 mRNA 0.53 21 8818570 8845025

Neighbor

gene id symbol gene type direction distance location
washc3 ccdc53 coding upstream 11400 8802548 ~ 8807170 (+)
acss3 acss3 coding upstream 253215 8515588 ~ 8565355 (+)
myf5 myf5 coding upstream 347536 8468661 ~ 8471034 (+)
myf6 myf6 coding upstream 354476 8462324 ~ 8464094 (+)
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding upstream 805759 7978077 ~ 8012811 (+)
atp6v1e1b LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460 coding downstream 73209 8918234 ~ 8926796 (+)
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding downstream 82047 8927072 ~ 8932977 (+)
LOC120553653 fgf6,LOC100708453,LOC101478942,LOC103358103 coding downstream 161533 9006558 ~ 9010187 (+)
fgf23 fgf23 coding downstream 172061 9017086 ~ 9020129 (+)
llph llph coding downstream 242148 9087173 ~ 9089548 (+)
LOC120553277 NA non-coding upstream 198075 8617814 ~ 8620495 (+)
G226554 NA non-coding upstream 409911 8341630 ~ 8408659 (+)
G226556 ppp1r12a non-coding upstream 459288 8356330 ~ 8359282 (+)
G226515 NA non-coding upstream 511742 8260333 ~ 8306828 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding upstream 760953 8047779 ~ 8057617 (+)
G226638 NA non-coding downstream 24993 8870018 ~ 8870711 (+)
G226641 mybpc1 non-coding downstream 36792 8881817 ~ 8883677 (+)
G226720 NA non-coding downstream 90025 8935050 ~ 8935551 (+)
LOC120553611 NA non-coding downstream 96816 8941841 ~ 8943537 (+)
G226716 NA non-coding downstream 167117 9012142 ~ 9012662 (+)
rps16 rps16,LOC103382554 other upstream 385873 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 1249267 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 1286493 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1392316 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1418171 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 289569 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 392201 9237226 ~ 9241349 (+)
G227121 kera other downstream 1852229 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 1887044 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 2103260 10948285 ~ 10986201 (+)

Expression


Co-expression Network