zcrb1 (zcrb1)


Basic Information

Item Value
gene id zcrb1
gene name zcrb1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15491283 ~ 15493423 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791545.1
TTGCGACGTACAGACATGGCGTTTGTTTCTGTTTGCTAAAGTAGCTGCATACAAATCATATGTCAATGATCATAATACGTCCAtgatacaaatacacacaagtctgctattttaaacacatttggaTATTATTCAACGGTGGAGGCTGTGTTGTGTGTCATATGCGTCCAGTATGAGCGGGGGTTTGGCACCAAGCAAAAGCACTGTGTATGTGTCAAACCTGCCATTCTCTCTTACCAACAATGACCTACACAAGCTATTCACCAAATATGGAAAAGTTGTAAAGGTTACAATCGTTAAAGATAAAGACACTCGCCAGAGTAAAGGGGTGGCGTTTGTTCTCTTCCTGGACAGAGAATCTGCTCACAACTGTGCAAGAGCAGTGAATAACAAACAGTTGTTTGGCAGAACAGTGAAAGCTAGCATTGCCGTAGACAATGGGCGAGCAACTGAGTTTATAAGAAGACGGAACTACACAGACAAGACCAAATGTTACGAATGTGGGGATACAGGTCATTTGAGCTACGCATGCCCCAAAAACATTCTGGGAGAGAGGGAACCTccaaagaagaaggaaaagaaaaagaagaaaaaggctGACCAACCTGAGCATGTtgaagaagaagaagaaagtgaagaagagggagaggacCCAACCTTAGATAGTCTGAGCCAAGCAATAGCTTTTCAGCAAGCCCGTATTGAGGAAGAGAACGAAACACAGAAGAAGCAGGCACGCTTGTCTCAAGAGGAAGGTGCTCACGCTTCAACATCCTCAGACTCTAAGAAACCAAGGATCAAAAAGAGTACATACTTCAGTGACGAGGAGGAGCTTAgtgactaataataataataataataatgatacacAGCTTGGACATAAGTCGTTTGTCAAATATTGCTTTATGTTTGTaaattatattgtattataGTGGGGATGCTTTCGTTGACACTGATGAATTTACATTTTCCTCTTTTTGTAACTAAGACATTTCCTGTTGTTGGATTGATTGAGTGAGCATATGTGGTGTTTCTCAAAATCAGTCCGTCAATAAAACTTTGTTTCTTAATGACATACCAAA
>XM_039791546.1
GTACAGACATGGCGTTTGTTTCTGTTTGCTAAAGTAGCTGCATACAAATCATATGTCAATGATCATAATACGTCCAtgatacaaatacacacaagtctgctattttaaacacatttggaTATTATTCAACGGTGGAGGCTGTGTTGGTAAGTGTGTGTCATATGCGTCCAGTATGAGCGGGGGTTTGGCACCAAGCAAAAGCACTGTGTATGTGTCAAACCTGCCATTCTCTCTTACCAACAATGACCTACACAAGCTATTCACCAAATATGGAAAAGTTGTAAAGGTTACAATCGTTAAAGATAAAGACACTCGCCAGAGTAAAGGGGTGGCGTTTGTTCTCTTCCTGGACAGAGAATCTGCTCACAACTGTGCAAGAGCAGTGAATAACAAACAGTTGTTTGGCAGAACAGTGAAAGCTAGCATTGCCGTAGACAATGGGCGAGCAACTGAGTTTATAAGAAGACGGAACTACACAGACAAGACCAAATGTTACGAATGTGGGGATACAGGTCATTTGAGCTACGCATGCCCCAAAAACATTCTGGGAGAGAGGGAACCTccaaagaagaaggaaaagaaaaagaagaaaaaggctGACCAACCTGAGCATGTtgaagaagaagaagaaagtgaagaagagggagaggacCCAACCTTAGATAGTCTGAGCCAAGCAATAGCTTTTCAGCAAGCCCGTATTGAGGAAGAGAACGAAACACAGAAGAAGCAGGCACGCTTGTCTCAAGAGGAAGGTGCTCACGCTTCAACATCCTCAGACTCTAAGAAACCAAGGATCAAAAAGAGTACATACTTCAGTGACGAGGAGGAGCTTAgtgactaataataataataataataatgatacacAGCTTGGACATAAGTCGTTTGTCAAATATTGCTTTATGTTTGTaaattatattgtattataGTGGGGATGCTTTCGTTGACACTGATGAATTTACATTTTCCTCTTTTTGTAACTAAGACATTTCCTGTTGTTGGATTGATTGAGTGAGCATATGTGGTGTTTCTCAAAATCAGTCCGTCAATAAAACTTTGTTTCTTAATGACATACCAAA

Function

symbol description
zcrb1 Predicted to enable RNA binding activity and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZCRB1 (zinc finger CCHC-type and RNA binding motif containing 1).

NR:

description
zinc finger CCHC-type and RNA-binding motif-containing protein 1-like

GO: NA

KEGG:

id description
K13154 ZCRB1; U11/U12 small nuclear ribonucleoprotein 31 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791545.1 True 1082 mRNA 0.40 8 15491283 15493423
XM_039791546.1 False 1082 mRNA 0.40 8 15491290 15493423

Neighbor

gene id symbol gene type direction distance location
pus7l pus7l coding upstream 123164 15360929 ~ 15368119 (+)
LOC120553796 LOC104934096,LOC103355199 coding upstream 145558 15338839 ~ 15345725 (+)
fgl2a fgl2 coding upstream 234960 15246158 ~ 15256323 (+)
LOC120553461 NA coding upstream 737033 14750780 ~ 14754250 (+)
lmod2b lmod2 coding upstream 1070324 14413543 ~ 14420959 (+)
gxylt1b gxylt1,LOC103355206,LOC103459445 coding downstream 18426 15511849 ~ 15521235 (+)
akap14 NA coding downstream 265888 15759311 ~ 15759832 (+)
avpr2l LOC103369361,LOC104965399,LOC107098425 coding downstream 269370 15762793 ~ 15764738 (+)
LOC120553452 NA coding downstream 276589 15770012 ~ 15772705 (+)
LOC120553449 LOC102291490,LOC101477496,LOC100701114,LOC102193524 coding downstream 283492 15776915 ~ 15789611 (+)
G228065 NA non-coding upstream 200775 15290187 ~ 15290508 (+)
G227995 nampt,LOC102790888 non-coding upstream 325074 15154129 ~ 15166209 (+)
G227969 NA non-coding upstream 346085 15141212 ~ 15145198 (+)
G227972 znf800,LOC102791911 non-coding upstream 430449 15060004 ~ 15060834 (+)
G227970 NA non-coding upstream 433805 15054705 ~ 15057478 (+)
G228119 NA non-coding downstream 37708 15531131 ~ 15531439 (+)
G228128 cntn1 non-coding downstream 183932 15677355 ~ 15680269 (+)
G228130 NA non-coding downstream 186950 15680373 ~ 15681491 (+)
G228136 NA non-coding downstream 196485 15689908 ~ 15699902 (+)
LOC120553205 NA non-coding downstream 228101 15721524 ~ 15722242 (+)
prickle1b prickle1 other upstream 19396 15441985 ~ 15471887 (+)
lrrc17 LOC103355197,LOC103382847 other upstream 160105 15300522 ~ 15331178 (+)
LOC120553256 gsap,LOC102790605 other upstream 288242 15168604 ~ 15203041 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 1028809 14454593 ~ 14462474 (+)
LOC120553485 tmem60,LOC101486292,LOC104924613,LOC103382814,LOC100699021 other upstream 1486378 14002132 ~ 14004905 (+)
yaf2 yaf2,LOC102236902 other downstream 1254 15494677 ~ 15511178 (+)
tmem168a LOC103368481 other downstream 773713 16267136 ~ 16280061 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other downstream 1277635 16771058 ~ 16831243 (+)
stmp1 NA other downstream 1372887 16866310 ~ 16867796 (+)
morn2 morn2 other downstream 1386853 16880276 ~ 16916928 (+)

Expression


Co-expression Network