sapcd1


Basic Information

Item Value
gene id sapcd1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16983903 ~ 16987555 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791555.1
tctttctctctctcaatctgTGTCACTGTATGTCGATTAACCAGTCATGGCAGTGACATGTGGAATTTTTCATTACCTCGCCCCAGGGGCCTGTGCATGCGTATccacatgctgttttttttccccaatccctgccttctctctctctctctgtctctctctctctctctctccctgtggcATTATTCTGAGTCAGCCGGTGGCGAGCAAtggtttgttgtttgttattcAGCCAGCTGTACTGTATTGGGCAGTGGTCATAGCTGTCAGTGACTGATCTCCTCTCCATGGCCTGTCGTCCCCCCGACTCTGGCTCCTACACTGTGGTTATCATCCCGCTCAGGACCAGCCTCTGCAGCCTGGACGCACTTCGCTTCTACCTATGGGTTAAGCGTCTGAGGGatctagagaaggagaaggacGCACTGTGCTCGGGCCTGGAGATCCTGGAGAAGGCCCGTCTCTGGTACCTGCAGCGGCTGGAGGAGAACAGAGCCAGGCAGGACAACACCGAGAGCAACACTGGAGTCGGCTCCTGCCAGGAAGGTGCAGCAGAGGCTTGGTCTTGCCTCATCAGGTCTCGTATCCAGCGAGTGAATGGCTCTCTGGGCTCTGTGATGAGTGAGCCCAATgtcaggagcagcagcagcacctctCTGCCTGACGCTGTGGCAGACAGCGACCTCCGCTGGCACAACACAGTGCTGACTCAGGAGGTGAGTGACAAGAATCGTCAGATCTCCATGTTAGAATTGGAAAAAGACGCTCTCCTTGAACAGCTTGATGAACTGCAGGCCCATTgattgcacatacacacacatgagcTTTACTGCAAACTTACATTTAACTTTATGTCACACAGGTGCTAACTTTGAACTCCttgtaaatatgtatttaaatcaataaattaCAGTAAAGGATGCATCAA

Function

NR:

description
PREDICTED: suppressor APC domain-containing protein 1-like

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0198738 cell-cell signaling by wnt biological_process
GO:1905114 cell surface receptor signaling pathway involved in cell-cell signaling biological_process
GO:0016055 Wnt signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791555.1 True 928 mRNA 0.51 4 16983903 16987555

Neighbor

gene id symbol gene type direction distance location
prdm4 prdm4,LOC102777312 coding downstream 4868 16972532 ~ 16979035 (-)
tmem209 tmem209 coding downstream 11456 16965571 ~ 16972447 (-)
ahcyl2b ahcyl2,LOC103371314 coding downstream 18959 16917305 ~ 16964944 (-)
strip2 strip2 coding downstream 71274 16882811 ~ 16912629 (-)
dhx57 dhx57 coding downstream 103725 16869736 ~ 16880178 (-)
LOC120553682 NA coding upstream 121982 17109537 ~ 17112443 (-)
cdpf1 cdpf1 coding upstream 126453 17114008 ~ 17116453 (-)
pparaa ppara coding upstream 129198 17116753 ~ 17135130 (-)
atxn10 atxn10 coding upstream 209386 17196941 ~ 17207454 (-)
LOC120553673 NA coding upstream 221071 17208626 ~ 17220357 (-)
G228360 NA non-coding downstream 34097 16914607 ~ 16949806 (-)
G228295 NA non-coding downstream 152664 16824829 ~ 16831239 (-)
G228290 NA non-coding downstream 236863 16746743 ~ 16747040 (-)
G228283 NA non-coding downstream 447610 16536018 ~ 16536293 (-)
G228221 gpr85,LOC106576049 non-coding downstream 759754 16216115 ~ 16224149 (-)
G228401 NA non-coding upstream 149715 17137270 ~ 17138275 (-)
G228423 NA non-coding upstream 233650 17221205 ~ 17222228 (-)
G228439 kdm5a non-coding upstream 255910 17243465 ~ 17243980 (-)
G228474 NA non-coding upstream 285393 17272948 ~ 17275477 (-)
LOC120552976 NA non-coding upstream 414693 17402248 ~ 17402832 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 160471 16748842 ~ 16823432 (-)
G228191 NA other downstream 1192050 15771238 ~ 15791853 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other downstream 1893920 15055475 ~ 15089983 (-)
grm8a grm8 other downstream 1930618 14634110 ~ 15053285 (-)
waslb LOC103370764 other downstream 2533314 14424237 ~ 14450589 (-)
slc37a3 slc37a3 other upstream 20169 17007724 ~ 17020735 (-)
G228465 NA other upstream 307567 17295122 ~ 17302198 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other upstream 843061 17830616 ~ 18100995 (-)
gramd4a gramd4,LOC103376144 other upstream 1375704 18363259 ~ 18421407 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 1750841 18738396 ~ 18823090 (-)

Expression


Co-expression Network