sbf1 (sbf1)


Basic Information

Item Value
gene id sbf1
gene name sbf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23718339 ~ 23809346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791559.1
CGGCTCTCCGCTGTCAGGGCAAGGCAGACTGACAGTATGGCGGCGGGGTGCAGCTGGAAGGATGCTACTGTCGCCCGTGATGTGTATATCGCCGGTAGGACGTAAATGGACAATTGACGGCAAAAAGAGAAGAGGATTTAGCGAGAAAGGCTCGTCGCCGTGAGCTCCAAAGATGGCCAGGCTCGCCGACTACTATTTAGTGGTCGGTTACGACCTCGACAAGCGAGtGGAGGGTGAAGGTCTAGGTCGCATTCTCCAGCGGTTTCCTGAGAAAGACTGGGAGGACAGCCCGTTCCCACAAGGCATAGAGCTGtTCTGTCAGCCCAGCGGTTGGCAGCTGGTTCCTGAGCGGCAACCTGCTTCCTTCTTTGTAGCGGTTTTGACCGACATCAACTCAGAGCGTAACTACTGTGCCTGCTTCACCTTCTGGGAGGGCCTGGACAACCCCCAGCTGCAGAAGGCTAAGGCCAGCGAGGCGGATGAGGTGGACGAGGGGCTCGCCGTCGTCCAATCGGCTCAGGTCTTCGCCCCCAAGAGCCTGGTGCTGGTGTCCCGACTGGACTACACCGAGGTGTTCAGGAACTGTCTGGGTCTGATCTACACCGTCCATGTCGATGGCCTGTCTGTCCCCTTGGAAACGGTGATCGGGAACCTGCTCACGTGTATCATCCCCATCGCTGGAGGCTCCCAGCCGGgccaggaggagagagaggagagtttGAGGACTATAACGTTAGGTGCTGGCGACCGGCAAGTTATCCAGACTCCCATCGATGATGCACTTCCTGTCAGTGGCAGCACCGTGGCCCAGCTCTTCAGACAGCTCGGGATAGTCAACGTGCTGTATCTGTTCTGTGCCGCGCTGACGGAACATAAGATCCTGTTCCTGTCCAGCAGCTACCAGAGGCTGACCGACGCCTGCCGGGGATTGCTGGCCATCATGTTCCCCCTCAAATACAGcttcACCTACGTTCCCATCCTGCCAGGGAAACTGCTGGAGGTCCTGAGCACCCCCACCCCCTTCATCATCGGTGTCAACTCATTCTTTCGCTCGGAGACACAAGAATTGttggATGTGATCATCGCTGACCTGGACGGCGGCACGGTGACCATCCCCGAGTGTGTCCACATCTCCCTGCTGCCTGAGCCGCTCCTCCAGCAGACCCAGACTGTGCTCTCCATGgTTTTGGATCCAGAGCTGGAAGTCGCTGATCACGCCTTCCCCCCTCTATCCACACAACCCTCGGCACTCAAGATCCAGGATAAGGAGATCCGGGGAGTCTTCCTGTGGCTGTTCGCTCGGCTCTTCCAGGGCTATCGCTGGTGTTTACACATCATCCGCATTCACCCAGAACCGGTGATCCGCTTCCACAAGGCTGCCTTCCTGGGTCAGAGGTCGCTGACGGAGGACGACTTCCTCATGAAGGTGTTGGACGGCATGGCGTTTGCGGGCTTCGTGTCCGAGCGAGGGCCTCCTTACAGAGCCACCGACCTGTTTGATGacCTGGTGGCCAATCACGTGGAGCGGATACGACAAGAGGAGGCCTGTCCACACAAAGTCCTGAACCACGTCAAGGAACTGGCTGAGCTGCTCttcaaaaatGAGAATCCGTACCCCGCTGTGGCCATGCACAAAGTCCAGCGGCCGTCAGAAAACAGCCAGAGCGGCGGAAACAATCCGACGCCGTTCCCTGCGCTGGACGATGTCGCTGTGCAGCTCTTCATCGACCACGCTGCCGCCAAGCTCAAGACTGCACCTCCTGTGGTCAAGGCGGAGCTCAAGGGCATGGTGCCATCTGGGCCCCCGCTGGGAGACACCGTGGACAGGAACGGCATCGTGATGGCCAACAGCGCCCGCAGGCTGGAGGTGGTCAGGAACTGCATCACGTACATCTTCGAGAACAAGATGCTGGAGGCCAAGAAGTTAATGCCAGCTGTACTGCGGGCGCTGAAGGGGCGGGCAGCCCGGATTTGTTTGACCCAGGAGCTCAATCAGCACGTCCTGCAGAACCGAGCTGTGCTGGATGACCAGCAGTTTGACTACATTGTCCGAATGATGAACTGCACCTTACAGATGGGACACCCGCCCGCCTGCTCTCATCCCCGGCTCCCTGGAGCTCGGTGCGCCGCCGCTGCCTGGCAAAGGCGGCGGCATCGGCGTCCCCAGGGACCGCTGGACTGCTCGCATATAGATGAACATGGTATTGCAGCTGCCCTCCTTCCACTGGTCACAGCCTTCTGCAGAAAAATGGGCGCGGGCATCACTCAGTTTGCCTACAGCTGCGTCCAGGAGCACATGGTGTGGACCACAATGCAGTTCTGGGAGGCCATGTTCTACAGCGACGTTCAGAGCCACATCCGAGCTCTGTACCTAGAGACAGAAGAGGGAGAGCAGCACAACAACTCTGAGCAGCCGGACGGGTCAGGCAGTCGGAGGGAGATCAGCGCCCTGGAGCTGGCGTCGGAGCAGAGCCGCCTGTGGCCGACGCTCAGCAAGGAGCTGCAGACGGAGCGCGTGCAGAAGGAGGAGAGCACGGTGTTCAGCCAGGCCATCCACTACGCCAACAGGATGAGCTacctgctgctgccgctggaCACCAGCAAGAACCGGCTGCTGAGGAGCTCCGGCCTCGGCGACGTGGAAAGCGTCAGCAACAGCTACGTCACAAACAGTATTGCAGGCAGCATGGCGGAGAGCTACGACACAGAGAGCGGCTTCGAAGACGCCGAGAGCTCTGACGTGGCTAACTCGGTGGTGCGCTTCATTAACCGCTTCGTAGACAAAGTGTGTAACGAGAGCGGCGTGACCAACGAGCACCTGAAGGCTCTCCACGCCATGATCCCAGATATTGTTCAGATGCATATCGAGACGTTAGACGCAGTCCACCGGGAGAGTAAGCGGCTGCCTCCGATCCAAAAGCCCAAGCTGCTGAGGCCGACGCTGTTGCCCGGGGAGGAGCTGGTGATGGACGGCATGCGGGTCCACCTGATCCCCGATGGCCGCGAGGAGGCCACGGGGCTGATGGGAGGGCCGCCTCTGCTCCCTGCTGAGGGCGCCATCTTCCTCACCAACTACCGGCTCATCTTCAAGGGCACGCCCAACGACCCACTGGTGGGGGAGCAGGTGGTGACTCGCTCCTTCCCCATTGCCTCTCTGACTAAGGAGAAGAGGATCTCGGTCACTATACCAATGGATCAGTTTGTCCAGGAGGGGCTACAGCTGCGCTCCTGCACCTTCCAGctgATGAAGATTGCGTTTGACGAGGAGGTCGCATCAGACCTGGCTGAGGTTTTCAGGAAGCACATGCACAAGCTGCGCTATCCTCAGCACGTCCAGGGCACCTTCGCCTTCACTGTGGGTCAGTGCGGGAAGATGGTGGTGGAGCACAAGACCAAGGACAAGAACCAGTCACTCAGgACACTCTCCAAAAACCTGGTGAAGAGTGCCAAGAGGACCATCGGCCGGCAGTATGTGACCAAGAAGAAGTATTCCCCCCCCACCTGGGAAAACCGGAGCAGCTTCCAGTCAGAGCTGGATGAGGATGAAATTTCAGTTTCAGAGGAAGTGGACCAGAGCTCCCTCACCCTCTCCTCCACCATGCGCTCATCCGACAGACAGACCATGAGCAACGTCGTGGAGCGCGCCTGTTGCCGCGACTACCAGCGCCTCGGTCTGGGCACGCTCAGTAACAGCCTGACGCGTTCGAAAAACGAGCCTTTCAGGATTTCCACCGTCAACCGCATGTACACCGTCTGCAGGAGctaCCCCGGCCTGCTGATTGTGCCTCAGAGCATCCCAGACACGACAATACAGAGAATCTGCCGCTGCTACCGGCAGAATCGCTTCCCCGTCGTTTGCTGGAGGAATTCCCGAACCAAGGCCGTCCTGCTGCGATCTGCAGGCCTCCACGCAAAGGGGGTGGTGGGCTTCTTCAAGTCCCCTAATGCCCCTGCTTCAGGGCCCTCCCAGGCCGACTCCACCagtctggagcaggagaagtacCTCCAGGCCATCATCAGCTCCATGCCTTCTTACAGCGAGAGCAGCGGCAGGAACACACTCAGCGGCTTCACCTCCACACACATGAGCACCTCCGACTCCTCAGACAAGCTGAGGCAGCCCAAGATCGGTGCTCTGATGAAGCAGGTGATGGGCACCAGGGAGGATGTTCCCGGGACGTTCAGCAGAGGAGCTCTGGGTCAAAGGGCGAAAGTCATCTCCCTCTCTCAGCCCAAAGTGTCTGGCAAGGCCAGGAACCCTTCTAGAGGTAAATGGGGCAGTATCCGGGGCAGCGGGCGTCTAAGTGCCTACAACCCAGACGTGGGGACGCGCCGCGGGAAGGAGTCCCCGCAGTCCAACGGAGGGCCGGGCGAGGCGCTGTTTCTCCGCCAGCAGAAGGCCTACCTCTACATCATTGGAGACAAGGCCCAGCTCAAGGGAGGGAAGCAGGACTCGTTCCAGCAGTGGGAGGTGGTTCCCATCGAGGTGTGCGACGTGCGGCAGGTGAAGAACAGCTTCAAGAAGCTGATGAAGGCCTGCGTGCCCAGCTCCTCCACCACTGACCCCAACATGAGCTTCCTGCGCTGCCTGGAGGAGTCGGAGTGGATGGCTCTGctACACCGAGTGCTGCAGGTGTCTGTGCTGGTGGTGGAGCTTCTGGACACGGGCTCGTCGGTCATGGTCAGCCTGGAGGACGGCTGGGACGTCACCACACAGgtggtgTCCCTGGTGCAGCTGCTGTCTGATCCATACTACCGGACCTTTGACGGCTTCCGGCTGCTGGTGGAGAAGGAATGGCTGTCGTTTGGCCACAGATTCAGCCACCGTGGAGCGCAGACGCTGGGCAGCCAGAACAGCGGCTTCACCCCCGTCTTCCTGCAGTTCCTCGACTGTGTACACCAGATCCACCTGCAGTTCCCCATGGAGTTTGAGTTCAGTCAGTACTACCTGAAGTTCTTGGCCTACCACTATGTGTCCAACCGCTTCCGCACCTTCCTGCTCGACTCCGACTACGAACGCATCGAGCTGGgaGTGCTGTATGAGGAGAAAGGTGAGAGGAGAAGCCCTCAGGTGTGTAAGTCTGTGTGGGACTACATCGACCGACTCAACAAGAAAACCCCCGTCTTCTACAACTACATGTTCTCTCCTGAAGACGACGAGGTGCTGCGGCCATACACCTTCAACTCCAACCTGAAGGTGTGGGACTTCTACATGGAGGAGACCCTGTCGGAGGGGCCCTCCTACGACTGGGAGCTGAGGGGCCGGCAGGAGCGCGTGGCGGAGGAGACGCCGGAGAGACCCGACAGCAGCGGCCCCAAATCGCAGCGGCACATCGTGTGGCCGTGTTACGACAGCCTGAGCAAGGTAGTGCCCGACGCCATCACCAAGCTGCTGCAGGACCTGCAGAGCCTGGAGGCGGAGCTCGGCCAGACGTCGGAGAAGTGGAAGGACACGTGGGATAAAATCAAGAACGCGCAGAGGACTGAGACCAAACTGGAAAGCAAGCCGTCGTTCTCCAGCTCCCTGCTGATGTCGTCCAACCTGAGCCACCAGCGGCGCTCTCAGGGCGTGTACCTGCAGGAGAGCGGCGTGGGCTCCTCCATCAACCTGGCTCTGGACTGCGAGGCCAGCGCCACCTCCACCCCCGCTGCCGGGCGGCCGAGCACCAGCACGCTCTACAGCCAGTTCCAGAGCACAGAGAGCGAGAACAGGAGTTTTGAAGGCATCCTGTATAAGAGAGGGGCACTGTTGAAACCATGGAAACCGCGGTGGTTTGTTCTGGACAAGACCAAACATCAGCTGAGATACTACGAGAGCAGGCGGGACAAGGAGTGTAAAGGGGTGATAGAGCTGGCCGAAGTGGAATCGGTCATTCCAGGAACGTCTGCCATGGGAGCACCCAAAAACATCGAGGAGAAAGCCTTCTTTGATCTCAAGACGACCAAACGGGTGTACAACTTCTGTGCCCAGGACAGCCTGAACGCACAGCTGTGGATGGACAGTGTTCAGAGCTGCCTGTCGGACGCCTAGACAGGAGGCGggactctctttttttttaaggagcaATGCAACCAGGAACGAATGAGCGGTGCTGCGGCACCTGACGGGCACCTCTGCCAGGCCGATCCCAGCGgagcagggagggagggggaggaggggcctTTCACCACTTAAGCTCGGTTCTGTTCGCTAGTGTTGAACTAATAACCTCGCGTCACAAcgtttcagtgtttttgttataaaaaaaaaaagttaaaaaatctggaaaaaaaaagaaagaaaaaaaaatgtactgaaGAACCACTTGCTGTCGTCTCACCAAGTAGCTGCAGCCTCTCGCCcccacccccccgccccccacgCAGTCTGACCACTATGTGTGCTGGATGTCTGTATGCATGAAAAAACAATGCGTATTAAAGCACATTGTTGCATTTCTGTGAGGCGTCCTGCAGCTTGGACCAGCATGAAGATCTTTCCAGACCCTCCACCGGTAAACCACAACCCccgctctccctccctccctctaacCCTGCTCGCCCTTTATGACACCCGGGGGAGGAGGAATGACGGAGGAGCTGCAGTCGCCCGCCGGGCCCAGCCGCCACAAacaggacccccccccccccttgtagGACCTACAAGATGCACTGGTGCCTCTCACTGCCTGATGGAGCCCTGTCCTAGACGGAGTTTCAGAGGAACCTGAGTGGGACGCTGCAGCTGCGAGGGGAGGGCAGGGGaggtgggggaggagggaggagggggagggggctcCTCAAGGGTTCATGAAggatttcctttttctttttcccccccaaatCTCCAATTTGTATCCGAAAGAGATCAATGCTCGTCGCCTGTCCTCAGCAGGCGAGGGCGACGATGGTGACGATATACTGTGAAAGCCATGGATCAGGCGCAGCGATCAAACCAGGAGAGCCGGGCGCAGATCGGAGTCGGTCAGGTATTGAGTGTGTCGGTGAACTTTCACTGAGAGTGTTTACAAAGTAGACAAAACTTCCCCTCACTAAGCTAAACTCTGCtcttcacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttggtgttttataAATCCGTACAACCACTATTaacattcagattttttttttttaagggatgCTGAAGGAAAAAGGAGGGATTTATTTTGTAGtgatatctttaaaaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
sbf1 Predicted to enable guanyl-nucleotide exchange factor activity and phosphatase regulator activity. Predicted to act upstream of or within regulation of GTPase activity. Predicted to be active in cytoplasm and membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4B3. Orthologous to human SBF1 (SET binding factor 1).

NR:

description
myotubularin-related protein 5-like

GO: NA

KEGG:

id description
K18061 SBF1_2, MTMR5_13; myotubularin-related protein 5/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791559.1 True 7276 mRNA 0.58 44 23718339 23809346

Neighbor

gene id symbol gene type direction distance location
cbll1 cbll1 coding downstream 34271 23677168 ~ 23684068 (-)
slc26a5 NA coding downstream 101263 23594352 ~ 23617076 (-)
dnajc2 dnajc2 coding downstream 129579 23562160 ~ 23588760 (-)
phax NA coding downstream 186532 23529757 ~ 23531807 (-)
cmah LOC101476433,LOC102306063,LOC100691852,LOC101466628,LOC102209249,LOC102786627,LOC103459632 coding downstream 442796 23229083 ~ 23275543 (-)
glt8d2 glt8d2 coding upstream 58810 23868156 ~ 23885592 (-)
net1 net1,LOC104963784,LOC103383002,LOC107560732 coding upstream 257063 24066409 ~ 24109573 (-)
podxl podxl coding upstream 447437 24256783 ~ 24284709 (-)
LOC120553465 nfyb coding upstream 555992 24365338 ~ 24375224 (-)
slc41a2b LOC103365955,LOC104923736,LOC106530824 coding upstream 699430 24508776 ~ 24565806 (-)
G229909 NA non-coding downstream 4662 23713456 ~ 23713677 (-)
G229908 NA non-coding downstream 11142 23702704 ~ 23707197 (-)
LOC120553168 NA non-coding downstream 76835 23623580 ~ 23641504 (-)
G229872 pmpcb non-coding downstream 157997 23538248 ~ 23560342 (-)
G229867 NA non-coding downstream 190800 23527105 ~ 23527539 (-)
G229952 NA non-coding upstream 137151 23946497 ~ 23948780 (-)
G229987 NA non-coding upstream 271181 24080527 ~ 24081153 (-)
LOC120553435 NA non-coding upstream 308386 24117732 ~ 24202125 (-)
G230067 NA non-coding upstream 394684 24204030 ~ 24225411 (-)
G230089 NA non-coding upstream 505737 24315083 ~ 24315857 (-)
LOC120553170 NA other downstream 6535 23690519 ~ 23711804 (-)
G229907 NA other downstream 18141 23699697 ~ 23700198 (-)
G229716 NA other downstream 478766 23104760 ~ 23239573 (-)
glipr1a NA other downstream 507842 23203768 ~ 23210497 (-)
LOC120553090 NA other downstream 1907242 21771088 ~ 21811097 (-)
LOC120553046 NA other upstream 48873 23858219 ~ 23863974 (-)
G229950 gdi2,LOC100708443,LOC102215003 other upstream 99210 23908556 ~ 23914692 (-)
sult4a1 sult4a1,LOC102784496 other upstream 1381915 25191261 ~ 25217693 (-)
LOC120553115 NA other upstream 1786232 25595578 ~ 25601380 (-)
mkrn1 mkrn1 other upstream 2361974 26171320 ~ 26196510 (-)

Expression


Co-expression Network