LOC120553300


Basic Information

Item Value
gene id LOC120553300
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10108319 ~ 10116627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791566.1
TctacacttaaaaaaatactttaaattgATACGCTTGCCTTCCCGCATTTAGATGCCCCCTCCTCACCCCACCCACTAAACTGTGGCGCTTGGCACGTCGACTTTGTCCTTCAGTTCTTACCGAAAGCAACGTGGTTGCAGCGGTGTGTCTTTAGTTTACATATCTGAACAACTCGTGAGAATCATTTCTATAGTTTTTTTCAGTGCAGTTGACTTGTGTGAAGCTTCCTTTTCCCTGCAAGGTTCAACGTTAAAGGCATTAGCAGGTGTCACGGAGCTCCAAGATGCCTAACAAAAGAACAAAGAGAAAGTTGGCAGACTCAGAGCCGCCGTCCAAATCGTCCAAAGTCACCTTCCTGAGCCCATCTCTTATCCTGCTGGAAATCCCCGCTGACACCAACACCAGCCTCCCAGTGTGGGAGGCCATGAGATCCCAGCAGGTTGACATCGCCTGGACCGTTAACCCTTACAGCATCAGTGTTCACTTAACCCCTGTGAGCTCTACGCAAGGGAAGATTACAACTTCCAGAAAAAGTGAAAGCACATCCAGTGTGGCGCAGACCATAGTGCCTTCCACCAGGATCCTGCAACCTCAGATGGTCATCCAGTTCATCACTCAGCAGCATGGCGCCACTCAGAACTCCTGTGTCCTGCTCACCCTTTCCCAAAACGGCACCCATTTGCTGCCGAGCCCACCAGGTCAACCACTGAAAATACCTCCAAACCCTACACCAGCCACTGCCGTCATCGTTTCCCTGCCTCTCATCATCACCCAACAACAGCCTCCCCATCAGCCTGGCACCTCTACCAAGAGACAGATCCTACCCGCCACCCAGAGCCCAACAGCCACTCCCACCAAGCAGCGAGCCCCGTCCAAAGTGCCTGTCCCCTCTCTGTTTCACACGAGGAGCTCCCCTGACATCCAGGTCTGTGACAGATTCCTCCTGGGTTTGTGTAGCGCAGGGAAAAGGTGTAAGATGCACCACACTCCCTACCCGTTTCACTGGCAGCTGTGGTGTGTGACCACCCACCAGTGGATCGACATCCCCTCTCGCTCTCAGGTCTTACTGGAGAGGAACTACTGCAATGTCGACCAAAAGCTCATTTACTTCAAGGATGGGCTTGTCCTCTACACTCTTGTCTTTGACTCGATGAAGTTGAACAACTCATTTCACTATGGTGGGGTTAGACGACTGACTAACTCTGACAGTCTGGTCAAGAACCCTTACTTTGCCAGCAAATGGAAAATCTACTGGTGGAACAACCTGGAATGGGAAGAGTACAACAAGGATGTGTCAACCTCGCTCCTAAAGAAGATGAGCGAAAAGGAGCCCGAGTGTTCCTTCTACATTGGCTCACAGCAGTACAAGGTGGACCTCGCCACCATGACCCAGTCCAACGTCACCACGGGGTTCCAGAGAAAAGTTCGCTGCAGACCCATCTACTGCTCCCCCAAATCCATGCAGCCTTACCTGCAGACAGGAATCCAGCCTGTCTCCACCGAGCCTGTCGGTGATCCTCCAGGTGAAAACTTCAGCGTGGACCCTCTGCAGGAGTTCAGCTCCTGGTATCCTCCAGTGTGGTGTCTGGCCTCGGAGCAGGACTACAGCCTAGTGGACCTTCCGGCTGGCACACAGGCCTACCGGAGTATTGAAAACCTCTTCAATGAGAGTCTGCCTGAGACCAAGGTGGACATCATCAGCATCGAGCAGATCCAGAACCTCCTCCACTGGGACAAGTACCAAAGGCAAAAGGCGTACATGCAGAAGCAGCACACCAACTCTAAGGAGCCTCTTGAGAGACATCTCTTCCACGGGACAACCAAAGAGCCCTCAGAGGACATCTGCCACAACAACTTCGACCCCCGCATGGCCGGGGTCCACGGAACGTCTCAGGGTTTTGGTTCCTACTTCGCCACCACCGCTTCCTTCTCCCACAAGTACACAGCCAGGGAGGGGCCAGATAAGGTTCGCCACATGTTCCTAGCCAAAGTCCTGGTGGGGAAGACGTGTCTCGGAAGGTTCAACTACCGCAGGCCGCCGCTTAACTCCAAGATGAGGCAGTTCTATCTCTACGACAGCTGCGTGGACAACATGGACAAACCCACTATGTTTGTAGTTTTTGATAGCTGTCAGTGCTACCCATACTACCTCATCAAGTACAAAGACCTGCCCCAAGAGATTGATATTTGATGAAGAGGACAGGCATTGATGGCACGGGAGTTAGTTTATGCTAATCGTTCAGACGTAAACAGTGTTAGAGTTGATGTAAGAGGACCCCGAAATGTTATCAACTGCATCAAATGTTGTCAGTTGCAGCAAATGCTCAGTTCGCTCACTTAAAATGTGCAATATATATGGATGATGTGCAATAATGTTCTACTTGACAACAATGAAGACAAGGAACCATACAGTAAAAATTTTGTATAAACTTATGAAgcactttatttttcaaaatgtctttattttagttattcaaacattttaaatcaatGGAAATAagtacttttgtttttctttcaaagCTGTTCTGAATCAAATTGACATCTGTTGT
>XM_039791567.1
TctacacttaaaaaaatactttaaattgATACGCTTGCCTTCCCGCATTTAGATGCCCCCTCCTCACCCCACCCACTAAACTGTGGCGCTTGGCACGTCGACTTTGTCCTTCAGTTCTTACCGAAAGCAACGTGGTTGCAGCGGTGTGTCTTTAGTTTACATATCTGAACAACTCGTGAGAATCATTTCTATAGTTTTTTTCAGTGCAGTTGACTTGTGTGAAGCTTCCTTTTCCCTGCAAGGTTCAACGTTAAAGGCATTAGCAGGTGTCACGGAGCTCCAAGATGCCTAACAAAAGAACAAAGAGAAAGTTGGCAGACTCAGAGCCGCCGTCCAAATCGTCCAAAGTCACCTTCCTGAGCCCATCTCTTATCCTGCTGGAAATCCCCGCTGACACCAACACCAGCCTCCCAGTGTGGGAGGCCATGAGATCCCAGCAGGTTGACATCGCCTGGACCGTTAACCCTTACAGCATCAGTGTTCACTTAACCCCTGTGAGCTCTACGCAAGGGAAGATTACAACTTCCAGAAAAAGTGAAAGCACATCCAGTGTGGCGCAGACCATAGTGCCTTCCACCAGGATCCTGCAACCTCAGATGGTCATCCAGTTCATCACTCAGCAGCATGGCGCCACTCAGAACTCCTGTGTCCTGCTCACCCTTTCCCAAAACGGCACCCATTTGCTGCCGAGCCCACCAGGTCAACCACTGAAAATACCTCCAAACCCTACACCAGCCACTGCCGTCATCGTTTCCCTGCCTCTCATCATCACCCAACAACAGCCTCCCCATCAGCCTGGCACCTCTACCAAGAGACAGATCCTACCCGCCACCCAGAGCCCAACAGCCACTCCCACCAAGCAGCGAGCCCCGTCCAAAGTGCCTGTCCCCTCTCTGTTTCACACGAGGAGCTCCCCTGACATCCAGGTCTGTGACAGATTCCTCCTGGGTTTGTGTAGCGCAGGGAAAAGGTGTAAGATGCACCACACTCCCTACCCGTTTCACTGGCAGCTGTGGTGTGTGACCACCCACCAGTGGATCGACATCCCCTCTCGCTCTCAGGTCTTACTGGAGAGGAACTACTGCAATGTCGACCAAAAGCTCATTTACTTCAAGGATGGGACAGGAATCCAGCCTGTCTCCACCGAGCCTGTCGGTGATCCTCCAGGTGAAAACTTCAGCGTGGACCCTCTGCAGGAGTTCAGCTCCTGGTATCCTCCAGTGTGGTGTCTGGCCTCGGAGCAGGACTACAGCCTAGTGGACCTTCCGGCTGGCACACAGGCCTACCGGAGTATTGAAAACCTCTTCAATGAGAGTCTGCCTGAGACCAAGGTGGACATCATCAGCATCGAGCAGATCCAGAACCTCCTCCACTGGGACAAGTACCAAAGGCAAAAGGCGTACATGCAGAAGCAGCACACCAACTCTAAGGAGCCTCTTGAGAGACATCTCTTCCACGGGACAACCAAAGAGCCCTCAGAGGACATCTGCCACAACAACTTCGACCCCCGCATGGCCGGGGTCCACGGAACGTCTCAGGGTTTTGGTTCCTACTTCGCCACCACCGCTTCCTTCTCCCACAAGTACACAGCCAGGGAGGGGCCAGATAAGGTTCGCCACATGTTCCTAGCCAAAGTCCTGGTGGGGAAGACGTGTCTCGGAAGGTTCAACTACCGCAGGCCGCCGCTTAACTCCAAGATGAGGCAGTTCTATCTCTACGACAGCTGCGTGGACAACATGGACAAACCCACTATGTTTGTAGTTTTTGATAGCTGTCAGTGCTACCCATACTACCTCATCAAGTACAAAGACCTGCCCCAAGAGATTGATATTTGATGAAGAGGACAGGCATTGATGGCACGGGAGTTAGTTTATGCTAATCGTTCAGACGTAAACAGTGTTAGAGTTGATGTAAGAGGACCCCGAAATGTTATCAACTGCATCAAATGTTGTCAGTTGCAGCAAATGCTCAGTTCGCTCACTTAAAATGTGCAATATATATGGATGATGTGCAATAATGTTCTACTTGACAACAATGAAGACAAGGAACCATACAGTAAAAATTTTGTATAAACTTATGAAgcactttatttttcaaaatgtctttattttagttattcaaacattttaaatcaatGGAAATAagtacttttgtttttctttcaaagCTGTTCTGAATCAAATTGACATCTGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791566.1 True 2553 mRNA 0.50 6 10108319 10116627
XM_039791567.1 False 2196 mRNA 0.50 4 10108319 10116627

Neighbor

gene id symbol gene type direction distance location
LOC120553783 LOC104962829,LOC102309285,LOC102208629,LOC100697441,LOC102795594,LOC101464871 coding upstream 518 10104931 ~ 10107801 (+)
LOC120553071 NA coding upstream 4714 10100696 ~ 10103605 (+)
chrm2a chrm2,LOC103140231,LOC106927335,LOC100534441,LOC102208075 coding upstream 78415 9952600 ~ 10029904 (+)
cd36 NA coding upstream 428504 9673991 ~ 9679815 (+)
LOC120553346 ergic2 coding upstream 834411 9268198 ~ 9273908 (+)
foxm1 foxm1 coding downstream 24155 10140782 ~ 10147571 (+)
LOC120553731 LOC105357099,LOC107105006,LOC108233212,LOC103459183 coding downstream 44104 10160731 ~ 10161654 (+)
def6c LOC103371612 coding downstream 48870 10165497 ~ 10174114 (+)
LOC120553550 mcat,LOC102779964 coding downstream 58516 10175143 ~ 10183282 (+)
ttll1 ttll1,LOC102779306 coding downstream 70791 10187418 ~ 10197239 (+)
LOC120553125 NA non-coding upstream 171726 9934175 ~ 9936593 (+)
G226930 LOC104947167 non-coding upstream 240234 9867575 ~ 9868085 (+)
G226921 mtpn non-coding upstream 281794 9796473 ~ 9826525 (+)
G226922 NA non-coding upstream 301717 9806242 ~ 9806602 (+)
G226918 NA non-coding upstream 354203 9751944 ~ 9754116 (+)
G227088 NA non-coding downstream 421569 10538196 ~ 10538689 (+)
G227107 tcp11l2,LOC102777109 non-coding downstream 508819 10625446 ~ 10627982 (+)
G227108 NA non-coding downstream 512181 10628808 ~ 10630212 (+)
G227116 NA non-coding downstream 549082 10665709 ~ 10667280 (+)
G227139 NA non-coding downstream 589283 10705910 ~ 10709545 (+)
ndufb2 ndufb2,LOC102790702 other upstream 866970 9237226 ~ 9241349 (+)
lhfpl3 lhfpl3,LOC101483460 other upstream 935099 9134594 ~ 9173220 (+)
rps16 rps16,LOC103382554 other upstream 1675622 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 2539016 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 2576242 7525892 ~ 7532077 (+)
G227121 kera other downstream 580627 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 615442 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 831658 10948285 ~ 10986201 (+)
G227216 NA other downstream 986209 11102836 ~ 11112905 (+)
G227278 LOC104928793 other downstream 1572542 11689169 ~ 11757317 (+)

Expression


Co-expression Network