ptn (ptn,LOC106927343)


Basic Information

Item Value
gene id ptn
gene name ptn,LOC106927343
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10030163 ~ 10072781 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791604.1
TCATCTGATGCTCCTACAGCTGCATTTTGTTGTTGAGTCTGAATATCTCTGTTGACATTTGGATCAGTGTCTCTTTCCACCGTCTCCCTTCTCTTTCTGTTTATGTGTATCTGTGCATCCCTttttcctctgtcagctctTTCTCCTCATCCCCACGGATGTTCCAAGCACTTTGACTCTTTACtgctctcttcctttctccttCTCCCACCCTCTCATCGGCAATCTCCCGTCTTCTCTCTGGTGTCTCAGTGAGTGCCAGGCGGGACGTCCCTAGAGTGACCTTGGGGGTAATGAGCTCCTGATCACGAGTCAGGAAACCCGGCATCCAACACCCAACCCACAACCCTCCCCTCACcccatgcaacacacacaaaaaaagaagaaaaaaaactacacagcTATCGCATGCTCAGCCCACAAAGAGAAATAGTATTGGAGAAGCAGGGCAACGGGGCAGAGGTGCAGATGAAAAGAACATAGAGAAAATACTACTTCAAGATATACAACTACCAGACCTCCAAAATAAAAATGAATGGACAGAAGCTGTGGACACGGGTGGCCGTGATGGCACTCCTGGTGCTAACAGTGATGGCAGCTGAAggaggcaaagcagagaaacaaGGAAAGAAGGAGCGCAAGTCAGACTGTGGGGAGTGgcagtggagtgtgtgtgtagccaaCGAAGGCGACTGTGGGCTCGGCACCAGGGAGGGAACACGCACTGGCACCGACTGCAAGCAGACCATCAAGACCCAACGCTGCAAGATCCCCTGCAACTGGAAGAAGAAGTTTGGTGGGGAATGCAAGTATGACTTCCAGGCTTGGGGAGAGTGCGATCTGGCGACGGGCAAGAAGAACAGGACGGGCTTGCTGAAGCGAGCGCTCATGGATGCGACCTGCGCTGCCACTGTCACAGCCACCAAGCCCTGTGGGAAAACCCCCAAGACTAAGCTGCAAGATGCGAAGAAGCaaaagaaggaaggcaagaagCGAGAACGCGCCCAAATGGACTGATGAGGTTGTTTGTCCCTGGGAGGAAGGAAGAAGAGGGTGGAAGGACGTCCACTGCCCTATCTCAACATGGTTCCTCTTTGTATATCCTGTAGGTTGACAGTAGGAGCCTATAGAGCTTTGACAAAACCAGTGGAAACATGACTTTTagtgaaaacatgttttactttttcttctttctagcACCTGATAAGAAACATCTTGTATGTTGCCATAGGAGATATAATACTCAGCGGTAGGGACAAATAATGAATACGGAAAGAAATTTGTTTACTAGTGTTCTTACCTAATGAtgttatttttaagattattttcttACGGACAAATTGGATAGCATTTGTTTTACAGTTGCATAGCTTAACTCTAATTTGGAAAACTCTTTGGTCCATGCCTCGACTTAATGAAGCAGTTGGCTAAAAGTGAAGCTCTAAACATCTTCACTTAATTAATTTGAGCAAACAAAAAGATTAGCATTTGCAATTTTTCCAAGTGTCTCAAGTTAATGGTAATGCTTTACCCCATTATTTTGTGCTatgatatttttcttttatttccagTAAGAATAAACCTATATCTGTCCGGAGACTGCATGGAATTGCATCTGTAGTGTGAAAACTACTACtgtttttagtgtgttttcCTCCTGCTGCTCAGTTGTACCTCAATTTATACCCACTGATTTTTACTCTCCAGCtgtttgctgtaaaaaaaagaaagaaaaaaaactcactatTGTAGTCGTCAGTTGGAGTTAACATTCCCTATgtttccaaaaataaaaaataaaaaggtagaCATGT

Function

symbol description
ptn Enables growth factor activity. Acts upstream of or within nervous system development. Predicted to be located in extracellular region. Is expressed in central nervous system and pharyngeal arch. Human ortholog(s) of this gene implicated in adrenal carcinoma. Orthologous to human PTN (pleiotrophin).

NR:

description
PREDICTED: pleiotrophin isoform X1

GO:

id name namespace
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K16642 PTN; pleiotrophin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791604.1 True 1814 mRNA 0.45 5 10030163 10072781

Neighbor

gene id symbol gene type direction distance location
mtpn mtpn coding downstream 203620 9796453 ~ 9826543 (-)
LOC120553797 LOC104925308,LOC103361818,LOC104949407 coding downstream 259837 9753743 ~ 9770326 (-)
sema3c sema3c coding downstream 307707 9681207 ~ 9722456 (-)
gnai1 gnai1,LOC107590838,LOC103382723,LOC100706147 coding downstream 360628 9648490 ~ 9669535 (-)
magi2a magi2 coding downstream 435472 9334502 ~ 9594691 (-)
zmp:0000000711 tulp3 coding upstream 44378 10117159 ~ 10138235 (-)
rhno1 NA coding upstream 66161 10138942 ~ 10140706 (-)
si:ch73-352p4.8 LOC105937590,LOC104962836,LOC107085821,LOC102237094,LOC103140239,LOC107386545,LOC103459124 coding upstream 74858 10147639 ~ 10153154 (-)
bik NA coding upstream 110504 10183285 ~ 10186973 (-)
trnay-gua_60 NA coding upstream 123003 10195784 ~ 10195870 (-)
G226917 NA non-coding downstream 287603 9742004 ~ 9742560 (-)
G226803 LOC103358093,LOC102788764 non-coding downstream 910192 9116810 ~ 9119971 (-)
G226800 NA non-coding downstream 990306 9037771 ~ 9039857 (-)
G226797 NA non-coding downstream 1000793 9029046 ~ 9029370 (-)
G226787 NA non-coding downstream 1060265 8969389 ~ 8969898 (-)
G227019 NA non-coding upstream 145305 10218086 ~ 10220450 (-)
G227020 NA non-coding upstream 148175 10220956 ~ 10284085 (-)
G227021 pacsin2,LOC102778832 non-coding upstream 150713 10223494 ~ 10225897 (-)
LOC120553506 NA non-coding upstream 436950 10509731 ~ 10537837 (-)
G227089 NA non-coding upstream 465423 10538204 ~ 10538416 (-)
dram1 dram1 other downstream 1215723 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 1236253 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 2138852 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 2535856 7422165 ~ 7494307 (-)
usp44 usp44,LOC102783730 other downstream 2751839 7269037 ~ 7278324 (-)
G227082 anks1b other upstream 440713 10513494 ~ 10522962 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 907417 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 1385800 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 1544574 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 1764467 11837248 ~ 11848941 (-)

Expression


Co-expression Network