hcls1 (LOC106957547,LOC106924663,LOC103140207,LOC104950087,LOC103358095)


Basic Information

Item Value
gene id hcls1
gene name LOC106957547,LOC106924663,LOC103140207,LOC104950087,LOC103358095
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9089726 ~ 9095823 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791605.1
ACTATTATTTAGCTACATCAACGCACGTTCATGTTACTGTACGCTAGATCCGCGTTCACTTGTCGTCCATCAGACTGTCACAACTCGAGTGAAGACCAGTCGTTGTAATATCCACTTAAACACATATATTACCGTGACAACTAAAAGATGTGGAAGTCAGTCGTGGGCCACAATGTGAGCATTAAGGTGGCTGCAGAGGGGGACGACTGGGAGACAGACCCCGACTTTGAGAATGATGTATCAGAGCAGGAGCAGAGATGGGGAGCAAAGACCATCGAGGGTTCAGGACGAAAAGAGCACATCAGTGTTGCAGAGCTCAGAAAAAATGTCGCTGTGGAGCACGAGCAGGGGAAGCAGAAGGATCAGACTCCCAAAGCGTCATACGGATATGGAGGGAAGTTTGGAGTCGAAAAAGACAGAATGGACAAGGTGGCTTTGGGGCACGACTATGTGGCACAAGTCGAGCAGCACTCCTCCCAGAAAGATGCGGCACAAGGGTTCGGCGGAAAATTTGGTGTTCAGAAAGACCGCGTCGACAAGACTGCCATGGGCTTTGAATACAAAGGAGAGGTGTCGCAACATGCATCTCAGAAAGATTACTCAAAGGGATTTGGAGGAAAGTACGGGGTGGAGAAGGAAAAAGTGGACAAGGCCGCTTTGGGGTACGACTATAAAGGCCAGACAGAGAAGCACCAGTCACAAAAAGACTATGCTAAGGGATTTGGAGGAAAGTACGGGGTGGAGAAGGAGAAGGTGGATAAAGCTGCTCTGGGGTACGACTATAAAGGAGAAACAGAGAAGCACCAGTCACAGAAAGATTACTCAAAGGGATTTGGGGGGAAGTTTGGTGTTGAGAAGGAGAAAGTGGATAAAGCTGCTTTGGGCTATGATTATAAGAGCGAGACGGAGAAACACCAGTCACAAAAAGATTATTCAGCAGGTTTTGGAGGTCGTTATGGAGTTCAAGCAGACCGCATGGATAAGAGTGCAGCCGGCTTCTCTGACATGGACTCCCCTACCTCTGCATATGAAAAGACACAACCATTAGAGGCctCAAGTGCAGGTGCAGGTGCAGGAAAACTTAAGGCACGTTTTGAGAACATGGCCAAAGCTTCTGATGAAGAGAACAAGAAGAAAGTCGAAGAAGAGAGAGCGAGGAGACAAGCCAGAGAGGGCAGAGAGCGAGAGGTGGCCAAACGCAGACAAGAGGAAGAAAgcagaagagaggaggaaattTGTCCACCACCTGTTCCAGACGTGGCTCCAGATGAGACTCCAGATGTGGAGTATGAAATGACACACCCAGAATTCCAACAAATGCCAGAGATACAAGAAATacctgaaccagaaccagagGAGGAACCAGAATACGACATGCCCCCGGACTTGCCTCCACGTTCGGACAATTTCTTCGAACCGGATGCTCCCCCGCTACCCGACAGGTCATTAGATGTGGACGAGGGTGAAGGAGAGTACGAGGAATTTCTTGAAGCGCCTCCTCCTGTGCCGACAGCAATCGATAACGACTACGAAGACCTGTCGAGTGGCCAGAGGGCAGTAGCAATTTATGACTACGTAGGAGAGGCGGATGACGAAATCTCCTTCAACCCAGACGACGTCATCACCAACATAGAGATGATTGACGAGGGCTGGTGGAAGGGACAGTGTCACGGACGCGTTGGTCTTTTCCCGGCTTCTTATGTTCAGCTGACGCAGTAAGCAACATGCTTAGGGAGGTTTTGCACAAGCGTCAGTTAAACAATCATGTATCTTAGGTGGTTCAACAGGGAGAATTCATTTTAGCACTGTATTTATAGAGAAATCACAGAACATTTGTGCCAAAATGGCTTCTGATTAGCgtatttcttttattgtgttaatatCTTGCTTCGGGTCTGTGGCAAAGAGTATCTTGACAGTATGACCGTATTAGGGGCAAGCAGTTACAGCTTTTATCTGTAATGAACCGATTGGAGTCAATAAAAATATTCCACAGACAA
>XM_039791606.1
ACTATTATTTAGCTACATCAACGCACGTTCATGTTACTGTACGCTAGATCCGCGTTCACTTGTCGTCCATCAGACTGTCACAACTCGAGTGAAGACCAGTCGTTGTAATATCCACTTAAACACATATATTACCGTGACAACTAAAAGATGTGGAAGTCAGTCGTGGGCCACAATGTGAGCATTAAGGTGGCTGCAGAGGGGGACGACTGGGAGACAGACCCCGACTTTGAGAATGATGTATCAGAGCAGGAGCAGAGATGGGGAGCAAAGACCATCGAGGGTTCAGGACGAAAAGAGCACATCAGTGTTGCAGAGCTCAGAAAAAATGTCGCTGTGGAGCACGAGCAGGGGAAGCAGAAGGATCAGACTCCCAAAGCGTCATACGGATATGGAGGGAAGTTTGGAGTCGAAAAAGACAGAATGGACAAGGTGGCTTTGGGGCACGACTATGTGGCACAAGTCGAGCAGCACTCCTCCCAGAAAGATGCGGCACAAGGGTTCGGCGGAAAATTTGGTGTTCAGAAAGACCGCGTCGACAAGACTGCCATGGGCTTTGAATACAAAGGAGAGGTGTCGCAACATGCATCTCAGAAAGATTACTCAAAGGGATTTGGAGGAAAGTACGGGGTGGAGAAGGAAAAAGTGGACAAGGCCGCTTTGGGGTACGACTATAAAGGCCAGACAGAGAAGCACCAGTCACAAAAAGATTATTCAGCAGGTTTTGGAGGTCGTTATGGAGTTCAAGCAGACCGCATGGATAAGAGTGCAGCCGGCTTCTCTGACATGGACTCCCCTACCTCTGCATATGAAAAGACACAACCATTAGAGGCctCAAGTGCAGGTGCAGGTGCAGGAAAACTTAAGGCACGTTTTGAGAACATGGCCAAAGCTTCTGATGAAGAGAACAAGAAGAAAGTCGAAGAAGAGAGAGCGAGGAGACAAGCCAGAGAGGGCAGAGAGCGAGAGGTGGCCAAACGCAGACAAGAGGAAGAAAgcagaagagaggaggaaattTGTCCACCACCTGTTCCAGACGTGGCTCCAGATGAGACTCCAGATGTGGAGTATGAAATGACACACCCAGAATTCCAACAAATGCCAGAGATACAAGAAATacctgaaccagaaccagagGAGGAACCAGAATACGACATGCCCCCGGACTTGCCTCCACGTTCGGACAATTTCTTCGAACCGGATGCTCCCCCGCTACCCGACAGGTCATTAGATGTGGACGAGGGTGAAGGAGAGTACGAGGAATTTCTTGAAGCGCCTCCTCCTGTGCCGACAGCAATCGATAACGACTACGAAGACCTGTCGAGTGGCCAGAGGGCAGTAGCAATTTATGACTACGTAGGAGAGGCGGATGACGAAATCTCCTTCAACCCAGACGACGTCATCACCAACATAGAGATGATTGACGAGGGCTGGTGGAAGGGACAGTGTCACGGACGCGTTGGTCTTTTCCCGGCTTCTTATGTTCAGCTGACGCAGTAAGCAACATGCTTAGGGAGGTTTTGCACAAGCGTCAGTTAAACAATCATGTATCTTAGGTGGTTCAACAGGGAGAATTCATTTTAGCACTGTATTTATAGAGAAATCACAGAACATTTGTGCCAAAATGGCTTCTGATTAGCgtatttcttttattgtgttaatatCTTGCTTCGGGTCTGTGGCAAAGAGTATCTTGACAGTATGACCGTATTAGGGGCAAGCAGTTACAGCTTTTATCTGTAATGAACCGATTGGAGTCAATAAAAATATTCCACAGACAA

Function

NR:

description
PREDICTED: src substrate cortactin-like isoform X1

GO: NA

KEGG:

id description
K06106 CTTN, EMS1; cortactin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791605.1 True 2000 mRNA 0.48 16 9089726 9095823
XM_039791606.1 False 1778 mRNA 0.48 14 9089726 9095823

Neighbor

gene id symbol gene type direction distance location
pex26 pex26 coding downstream 2593 9084081 ~ 9087133 (-)
usp18 NA coding downstream 5777 9074627 ~ 9083949 (-)
LOC120553659 ccnd2,LOC100707642 coding downstream 35426 9040038 ~ 9054300 (-)
tigarb NA coding downstream 53017 9032235 ~ 9036709 (-)
LOC120553610 NA coding downstream 103801 8982705 ~ 8985925 (-)
golgb1 NA coding upstream 701 9096524 ~ 9114986 (-)
orc5 orc5,LOC102789043 coding upstream 24504 9120327 ~ 9134415 (-)
kmt2e kmt2e coding upstream 107071 9202894 ~ 9233353 (-)
kdm7aa kdm7a coding upstream 147581 9243404 ~ 9266246 (-)
si:dkey-97m3.1 LOC103366393,LOC101485159,LOC102205266,LOC102312910,LOC100698773 coding upstream 178346 9274169 ~ 9327128 (-)
G226800 NA non-coding downstream 49869 9037771 ~ 9039857 (-)
G226797 NA non-coding downstream 60356 9029046 ~ 9029370 (-)
G226787 NA non-coding downstream 119828 8969389 ~ 8969898 (-)
G226711 atp6v1e1,LOC103382684,LOC100708725,LOC103358108,LOC108233293,LOC101477634 non-coding downstream 166782 8918491 ~ 8922944 (-)
G226658 rps16,LOC103382554 non-coding downstream 659820 8426737 ~ 8429906 (-)
G226803 LOC103358093,LOC102788764 non-coding upstream 20987 9116810 ~ 9119971 (-)
G226917 NA non-coding upstream 646181 9742004 ~ 9742560 (-)
G227019 NA non-coding upstream 1122263 10218086 ~ 10220450 (-)
G227020 NA non-coding upstream 1125133 10220956 ~ 10284085 (-)
G227021 pacsin2,LOC102778832 non-coding upstream 1127671 10223494 ~ 10225897 (-)
dram1 dram1 other downstream 275286 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 295816 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 1198415 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 1595419 7422165 ~ 7494307 (-)
usp44 usp44,LOC102783730 other downstream 1811402 7269037 ~ 7278324 (-)
G227082 anks1b other upstream 1417671 10513494 ~ 10522962 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 1884375 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 2362758 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 2521532 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 2741425 11837248 ~ 11848941 (-)

Expression


Co-expression Network