llph (llph)


Basic Information

Item Value
gene id llph
gene name llph
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9087173 ~ 9089548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791611.1
CTGGTTCTTCAAAAACGCGTCatcgttttttttctctccaactTGTAAACACGTGGACGCagcggagtgtgtgtgttcctgtctcTCTACGGAGGAAATTTAAGCAGCTAAACTAGTTTTCTATCGTCCTTGAAATGGCAAAAAGCCTCAGGAGCAAATGGAAGAGGAAGATGCGtgcagagaagaggaagaaaaatgcTCCCAAGGAGTTGGCCCGTCTGAAACAAGCTCTGAGTCTGGATAAGAAAGGAGAAGCTACCATGACTGACATCCAGGAGATTGCCACGGTGGTGCCAGCTGACAAGATCAAGAAGCAAACGGATGCGGACATGGTGGAGGTTGAGGGGGAAGATGGGAAGATGGAACTGGACAGCAAGCGCAACAAGAAAACTCAGTTGGATGAAAATGGTCAGTACCCTGGGTGGATGAATCAACGGCAGGCCAAGAAACTGAAAGGCAAACGGGTGGCAAAGAAAACTGGCCAGGGCAAGAAGAAGAAGGGCATCGCCTGGTGAACCAGAGGAAACTGAAATACCTTTGCTTTGCCTTAAAAGACTTTTGACGCAGAAACACAGAATCATTTGATGTATTCTTTTATACATAACTGTGGAATTTTTGTTTTGGAATCTCATTCTCTTCAGTGGATTACAAGATTCATGGTTGTGCCACAGTGTGGGAAATGGAACATTTTCTTCTACAACAGAGTCTGTTTCTTATAAAGTAATTCACTGCAGGAAAATGTTTGTTCTTATGGAACAGCAGTCCATCTTCATGTTAGGACACGTTTTAAGAAAGCAAGACTGGTGCAAAATATGTATGATTGTCATATATTCTCTACTACAATTTAAtcttttcataaataatttacAGATCTGTGGCTTGTTTTGTTTACTAAGGTTGTATATAGACTGGGTGATATGGTTAAAATCAAGATTACTGGTTCAGCCTCGTGGCTTAGAGGTTGAGACGCTGCCCATGAAGCGCAAAGTCTCGGGTTTGAGTAGGAACGTTAGTTGCATGTAATTCCCTTATTTCTCCCCTCATTTTGTCTTGTCTTTCTACTGTCAGGCTCTCTAAATTAATTTGAAAATATTTCCAATATAGCTGCATATTCTAAGATATAGAAGATGTATGTAAAATCATAAATTAACCTTGTTTGTAGATAAAATACTTGTAaaacaa

Function

symbol description
llph Predicted to enable basal RNA polymerase II transcription machinery binding activity. Predicted to be involved in dendrite extension and positive regulation of dendritic spine development. Predicted to be located in chromosome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; lens placode; and midbrain. Orthologous to human LLPH (LLP homolog, long-term synaptic facilitation factor).

NR:

description
PREDICTED: protein LLP homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791611.1 True 1182 mRNA 0.41 3 9087173 9089548

Neighbor

gene id symbol gene type direction distance location
fgf23 fgf23 coding upstream 67044 9017086 ~ 9020129 (+)
LOC120553653 fgf6,LOC100708453,LOC101478942,LOC103358103 coding upstream 76986 9006558 ~ 9010187 (+)
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding upstream 154196 8927072 ~ 8932977 (+)
atp6v1e1b LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460 coding upstream 160377 8918234 ~ 8926796 (+)
gnptab gnptab coding upstream 242148 8818570 ~ 8845025 (+)
guca1a LOC103358093,LOC102788764 coding downstream 27257 9116805 ~ 9119985 (+)
LOC120553346 ergic2 coding downstream 178650 9268198 ~ 9273908 (+)
cd36 NA coding downstream 584443 9673991 ~ 9679815 (+)
chrm2a chrm2,LOC103140231,LOC106927335,LOC100534441,LOC102208075 coding downstream 863052 9952600 ~ 10029904 (+)
LOC120553071 NA coding downstream 1011148 10100696 ~ 10103605 (+)
G226755 NA non-coding upstream 47347 9037773 ~ 9039826 (+)
G226748 NA non-coding upstream 70898 9016073 ~ 9016275 (+)
G226747 NA non-coding upstream 71272 9015615 ~ 9015901 (+)
G226717 NA non-coding upstream 73527 9012843 ~ 9013646 (+)
G226716 NA non-coding upstream 74511 9012142 ~ 9012662 (+)
G226810 NA non-coding downstream 89591 9179139 ~ 9204451 (+)
G226885 NA non-coding downstream 561699 9651247 ~ 9654254 (+)
G226918 NA non-coding downstream 662396 9751944 ~ 9754116 (+)
G226921 mtpn non-coding downstream 706925 9796473 ~ 9826525 (+)
G226922 NA non-coding downstream 716694 9806242 ~ 9806602 (+)
rps16 rps16,LOC103382554 other upstream 654476 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 1517870 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 1555096 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1660919 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1686774 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 45046 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 147678 9237226 ~ 9241349 (+)
G227121 kera other downstream 1607706 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 1642521 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 1858737 10948285 ~ 10986201 (+)

Expression


Co-expression Network