podxl (podxl)


Basic Information

Item Value
gene id podxl
gene name podxl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24256783 ~ 24284709 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791667.1
CAGATCCCCCAAATCCAAAgaaagaagcagcagcagaagaggCAAACAAAAGCATTCTTGGCTTTGAGTTTCAAgacaagaagagagagagggagcgagagagagagagagagagagaagaagaagaagaaaaaaaaagttcacaaTACGTTGGGGCGAGATCATTTACTCGAGATCCAAATTGAGGGAGAAAGGCGTGACAGGACGGCGTCAGTTAGCGGCCACACTCGGCTCTATCACCACCCCGGCTCCGGTGCACCGAGGGACGGATTGTCGCGCGCGGCGCCGCGTGAAGCATACACCCACCGGGTAGACAGGATGAGAGCGACCGGGAGGATGGCGTGGCTGCTGCTTTCACTCAGCTTCCTATTCCACAGCGCCTGTTCAAATGATACGACTACGGTGAGCAAGAATCCTACCATCACGACTGGGGCACCGACTACGCCAACTGTGCCAAAGCTAACTAGTAGTGGCCCAACTGGAGCACCATCAACTATTGGTTCTGTTAAGACAACCATACCTACCCAGccatcaacaacaaaacaaattcctgcGGTCTCCACGCCTGCTACCACCACGATGCCTGCTATAGACAAGCAAATCTCCACCCAATCACAAGCACCCACTGTCACAAACAGCCCACCAGCACATTCCACTACCATCTCTGGTGCACCCCCTACAGTGAGTAATGGTGccactactgctgctactactacccTCAGCCAAACAAAGACCACACCCCTAGCTTCAACAGCTGCAACAGCTGGAAAAGATGCAGCAGTATCCTCCAACACTGATGCGCTGCAGACACCTGGCACCACCAAATTCTCTGGGACTGAAGTGCCTGCCACACAGACTGTCAACGTGGGGACAACCAAGATTGTGATTTTGACAAATGCCCCTACGACTGGGCCACAGTCCATGACTCACACCGCCATCCCCACTAGCCAAGGGAGAAATGGAGGAGCCGATAACACAGCTGTGACGGGAACAAGCAGTGGGCAGACTGCATCCGGGGCCACAAAGCCAGCTGTTAACACAGGGACCACCAGCACCCAACCAACCCTGACCCGGGCAGGATCTCCCGCAGCAAAGACCACCAACACTGGAACCACGTCACCGcaaaccaccaccaccactacaaCCAGCACCACCAGCACCACCAGCACCACAGCAGCTCAGCCAAAGACCTTTTTGtaTTCTCTAAACAGCGGACCCGAGaaagaggaggagaaagagctGGCGGAGGTGTGCAAGCGGCTGCTGGTGAATCTGCACGATGGGAACTGCACCCTGAAATGGCAGCACCACAACGGCAAAGTACAGTTTGACTATGTGGAGATAAATGGCAAAGTGAGAACCAACATTGCAGCCCAGTATTATGAAGAAATCACCAAGAAACCAACAGATAGCAAAACCCTGATAGCCATCCTGGCGTCCTGCGGAGCTCTGCTGATCATGATCGTCATCCTCGCCGTTTGTGCCTCGCACCGCCGCAAGCCATACAACGAGAACCAGCAGCACCTGACGGAGGAGCTGCACACGGTGGAGAACGGTTACCATGACAACCCGACGCTGGAGGTGATGGAGGTGCAGCCGGAGATGCAGGAGAAGAAGATGGCGCTGAACGGCGAGTTCAACGACAGCTGGATCGTCCCCATCGACAACCTGCTGAAGGAGGACATAGCCGACGAGGAGGACACGCACCTGTAGAGATGGCCcgggacagaggaggaggaggtggtggaagaggaggagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagacaagaAAGCGACAGGACCTGGCTAGTTCCAGCCacactaaaacaaacaaaagaatcTACACTTCTTGCTCCAAGTCAGCCCTTATcttatagtgcgttccatttgtactcggaagtcggaaacacccccccccccccaaactcgGATTTCCGAGTTGGGAAGTCGGGACAACCTTGCTGCCCCCCGAggtcaaaatccaacatggctgtcCCATGCATCAGCAGCAGTGTAACATGcagttattagcacttctgtccTATTTGTGTCTCAGTAAATCAGTAATACACACAGCGCTGTCtatcttctatctgtggacatgttgctgCGCTGCCTGTATGCACAAAACAGCGTCATGCGTTGTTAGCTACtggcagggttcaaaattagcaccgtttaccagccaaatgctggtgaaatatgcaagtggctggtagatttgcatcactcaccagccaaaaaaacaaatggtaatctattgagtggctggaaatatttgaacattcactagccatttggctggaagacaaaaaagttaattttgaagcctggctactggtattgctaaccatggctaacctggctagagctaacccCCCAATGAAAAATCGCCATTCCCTCTgaacgtcattcccagctccggctCCCGAGTTCCCGAGGTAAATGGGACGCACTATTACACTCCTGACCCTGGGATTGTTGTCCCTGTAGCAGAGAAGACTTTTCTCACAAAAAGATCCATTCTATAGAACCAccaagacccccccccccatgttagtgctgtctgtctgtttgatgatatatatatatatttctacagTAGTTTGCTATGAAAAAGAAATGAGGATTTTTTAAAAATCAAGCCGTTTGAGGATGAAGTACGAATTAAATTGTACACAGTGGCCTTGGAACGTTAAACACATCCACTAAATCTATCGCTGTTGTGCCTATTCCAGTAGGTaaataagtagggctgggcaataatatcgatattatatcaatatcgatatatgaggctagatatcgtcttggattttggatatcgtaatatcctgatatgccataagtgttgtcttttcctggttttaaaggctgcattacagtagagtgatgtcatgttgtgaacacaccagactgttctagctgttctattatttgcctttacccacttacattactgatgattgtTCATCAAAATTATCATTGCgtaaatgttttgtgaaagcaccaatggtcaaccctacaatatcgccccAATATCCATATggatgtatttggtcaataatatcgtgatattagatttttatccatatcgcccagctctatacATAAGTGACTTCATACAGAGCGCAATTCCACATTGGTCAGTCTGAAAGCTCAGAAGGTAATCCAAACACTAAGCGGATTGTGccctttcatttaaaaaaaaaatatggatgTGTACAAAAGCACCTGTAAATAGAGTATTTTTGGGTTATTTTCTACAAGCGAGAAgatgatattgcaaacagatcaCTTTGCTCTGGAGGCCTAAAAGGAAAGAGGTAACCGCAACTTCAGCTGCCTGTGCAGTTCTAGAGTTACTAACTCAGATATACCTAGACGACCTCAGGATACTTCAAAGCATCCTGGTGATTTTCCACTAGCGTGTGTCGGCTGTGAGAGAGCGGcactggagataaaaaaaaaaaaaaaaaaatgtccacaaAGGCACATGG

Function

symbol description
podxl Acts upstream of or within pronephric glomerulus morphogenesis. Predicted to be located in several cellular components, including filopodium; lamellipodium; and ruffle. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane and microvillus membrane. Is expressed in cardiovascular system; hindbrain neural keel; pronephros; and yolk syncytial layer. Orthologous to human PODXL (podocalyxin like).

NR:

description
PREDICTED: podocalyxin

GO: NA

KEGG:

id description
K06817 PODXL; podocalyxin-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791667.1 True 3531 mRNA 0.48 8 24256783 24284709

Neighbor

gene id symbol gene type direction distance location
net1 net1,LOC104963784,LOC103383002,LOC107560732 coding downstream 147210 24066409 ~ 24109573 (-)
glt8d2 glt8d2 coding downstream 371191 23868156 ~ 23885592 (-)
sbf1 sbf1 coding downstream 447437 23718339 ~ 23809346 (-)
cbll1 cbll1 coding downstream 572715 23677168 ~ 23684068 (-)
slc26a5 NA coding downstream 639707 23594352 ~ 23617076 (-)
LOC120553465 nfyb coding upstream 80629 24365338 ~ 24375224 (-)
slc41a2b LOC103365955,LOC104923736,LOC106530824 coding upstream 224067 24508776 ~ 24565806 (-)
trnap-agg_20 NA coding upstream 292241 24576950 ~ 24577021 (-)
LOC120553455 NA coding upstream 506783 24791492 ~ 24797223 (-)
aldh1l2 aldh1l2,LOC104948869 coding upstream 512686 24797395 ~ 24826222 (-)
G230067 NA non-coding downstream 31372 24204030 ~ 24225411 (-)
LOC120553435 NA non-coding downstream 54658 24117732 ~ 24202125 (-)
G229987 NA non-coding downstream 175630 24080527 ~ 24081153 (-)
G229952 NA non-coding downstream 308003 23946497 ~ 23948780 (-)
G229909 NA non-coding downstream 543106 23713456 ~ 23713677 (-)
G230089 NA non-coding upstream 30374 24315083 ~ 24315857 (-)
G230118 NA non-coding upstream 194385 24479094 ~ 24479656 (-)
G230119 NA non-coding upstream 194998 24479707 ~ 24481679 (-)
G230120 NA non-coding upstream 196978 24481687 ~ 24482539 (-)
G230121 NA non-coding upstream 197906 24482615 ~ 24485522 (-)
G229950 gdi2,LOC100708443,LOC102215003 other downstream 342091 23908556 ~ 23914692 (-)
LOC120553046 NA other downstream 392809 23858219 ~ 23863974 (-)
LOC120553170 NA other downstream 544979 23690519 ~ 23711804 (-)
G229907 NA other downstream 556585 23699697 ~ 23700198 (-)
glipr1a NA other downstream 1046286 23203768 ~ 23210497 (-)
sult4a1 sult4a1,LOC102784496 other upstream 906552 25191261 ~ 25217693 (-)
LOC120553115 NA other upstream 1310869 25595578 ~ 25601380 (-)
mkrn1 mkrn1 other upstream 1886611 26171320 ~ 26196510 (-)
G230594 mrps33 other upstream 2090983 26375692 ~ 26381365 (-)
G230730 NA other upstream 2832497 27117206 ~ 27118597 (-)

Expression


Co-expression Network