lmod2b (lmod2)


Basic Information

Item Value
gene id lmod2b
gene name lmod2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14413543 ~ 14420959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791678.1
ATCCCTCTCTTAAGGCCCAAAGAGCAGCTGGCGAGATTAGAGTGGAGaggacaccaacacacacactcaaacactcacacactcacagcaaCACGGCCAGCCAGGATAGATCCGGTTCAGATTCATCCGGCTAGGATCACCTCAACTGGGCCCCTCATGTCCGTGGATCTCCAGCAACCTCACGGTGgactttgtcttttgttggaaCCTCTACTCCCACACACCTACTTCATTTTGGGGTCCAGACTGAATCGCATGCAACTCAAGAACTGGTCTTTCTGTGGTTGTTTAAACTCATACTGACCGGTCTGTGCTAACTACACTTTGGCCATGAGCTGTTTTGGGTACCGCCGAGAGTTGAGTAAGTACGAAGATGTCGATGAGGACGAGCTCTTGGCTTCCCTCAGCCCTGAAGAGCTGGCTGAGTTGGAAAAGGAGCTGGTAGACATTGATCCTGATGCCAACGTGCCCATAGGACTTAGACAGAGAGACCAGACGGACAAGACCCCAACAGGCACCTTCAGCAGAGAGGCCCTCATGAAGTATTGGGAAAACGAGACACAGAGATTGCTGGAGGACGAGATAGGTGGAGGAAGCCCCAAACAGgatgaagaagaagaggaggagtgtGTGACAGACGAAAACAGCGGGGCAGAGGATGAAAAAGATGTTGAAAATGAGAAAGAACAGAACAAGCACGAAACACAAAAGCAGAAGGAAGACgaagatgaagaggaagaggaagaggaggaagaggagagtgaggaagaggaggaagctgtaacagaggaggaggaagatcaggaggaggaggaggaggaggaggaggaggaacaaGGTAATATATTAAAACCTGAACCCTCAAAGGATTCTGGGGCTTTGATGTCACAGGCCGAAACCCCAATGCTACTGAAGCCGCAGAGGGTGGAGCCTATGAGACTGACTCCTCCCCCTCCACCTGCCGACCTGAACGCGACCGGAAACCCAACAGTTGTCGACGAAGCTCTCCAACAAGCTCTTAGTGACGACCCTGAACTCACAGAGGTTAATCTCAACAACATTGACGATATCTCACAGGAAACCCTAATCCGATTTGCTGAAGCACTGAGGTCCAACACACACGTTCGGGTCTTCAGCCTCGCCAACACCCGGGCCGACGACCCTGTGGCTCTGGCCATTGCTAAGATGCTGAGGGAGAACTCGTCCATCACTAGTCTGAATATAGAGTCCAACTATGTGACTGGAAAAGGTGTGATGGCGCTGGTTCAAGCACTTCCTGGAAACAACACCCTGACTGAGCTTCGGTtccacaatcagagacacatgTGTGGAGGACAGGTAGAGATGGAGATGGTGAAGATACTGAGGGAAAACTACACTTTGATCAAGCTGGGCTACCAGTTTAACCTGCCTGGTCCCAGGATGAGCATGACGGGGATCCTCACCAGGAACCAGGACCGCAAGAGACAGAAACGGCTGCAGGAGCagaaaaaacagcagcagcagagccaaCAGGGGGCGCCAGATGGAGCTGTTAACCCCAGAACCACTGCACTGaaAGGAACTCCTCGTTCATCACCTTACAGCTCACCCAGAGCCTCACCTTGGTCCTCACCCAAACTTCCCCGGAGTGACCTGGCTAAAAAACATACTCCTCCTGCtccacctcctccccctccaccacctcctcctcccccacctccccccccaTTGCCGGCTCCCCCACAGCGGGAGAAGAAGCCCACCAGGATGATTGCGGAGGTCATCAAGGCACACGAGGCAGGCAGCAAGAAGATGAGAAAGACAAAAGGTAAGAAGGGCAAGAAGGGGAAGGAGTCGGGAAAAGAAGAGACGAGTAGCATCCTGAAGGAGCTCAAGAACGCGCTGAGGCCCGTGTCAGTGGAGCGGCGAGGGGAGGAGCACAGCAGGCCGTCCACGCCAATAAGGTCAGCCCACGACCAGCTGATGGAGTCCATTCGCAACAGCAGCACCTGCCGCCTGAAACGGGTGGAAGTCCCACATTATCTACGATAATACAAGCAGACGTAAAAGGGGTCTCTTCGTTGCCATGGAAATTGGGGAGTCTgcataatgatgatgatgatgatgatgatgatgatgttaatGGAGTGATGAAAGGACAAGATGAAAACATGTTGGTGGTGCTTAGCAGGCAAAAACTGAATTCTtattcatgaaaaagaaaatatactgGAAATTTGCACTGCAGTAACAGCTTtacaagttgtttttttaaagtattcAAGTATACTTGGAAAtggtatttgtattttaattttgaaatgaGTTGACTGAGCAGTTTACTGATATGTTTTCTAATTCACCGTTTTCTTGTAAAATTGTAAATACGATCTGTTGCTGGTTGAATTATGTGTTCATTTCTAAATATAACCATTTGGTGTTTACAATA

Function

symbol description
lmod2 Enables actin monomer binding activity and tropomyosin binding activity. Involved in actin nucleation and sarcomere organization. Located in actin filament and sarcomere. Colocalizes with M band.

NR:

description
PREDICTED: leiomodin-2 isoform X2

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791678.1 True 2431 mRNA 0.50 6 14413543 14420959

Neighbor

gene id symbol gene type direction distance location
asb15b LOC103373124 coding upstream 528 14397723 ~ 14413015 (+)
ints13 asun coding upstream 38889 14367920 ~ 14374654 (+)
LOC120553477 NA coding upstream 245947 14160077 ~ 14167596 (+)
LOC120553478 NA coding upstream 253555 14144781 ~ 14159988 (+)
LOC120553474 NA coding upstream 268880 14137191 ~ 14144663 (+)
LOC120553461 NA coding downstream 329821 14750780 ~ 14754250 (+)
fgl2a fgl2 coding downstream 825199 15246158 ~ 15256323 (+)
LOC120553796 LOC104934096,LOC103355199 coding downstream 917880 15338839 ~ 15345725 (+)
pus7l pus7l coding downstream 939970 15360929 ~ 15368119 (+)
zcrb1 zcrb1 coding downstream 1070324 15491283 ~ 15493423 (+)
G227875 NA non-coding upstream 34849 14376864 ~ 14378694 (+)
G227874 NA non-coding upstream 38078 14374819 ~ 14375465 (+)
G227843 LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC101068996,LOC107094607 non-coding upstream 79620 14326137 ~ 14333923 (+)
G227811 NA non-coding upstream 193939 14219309 ~ 14219604 (+)
LOC120553487 NA non-coding upstream 297207 14115743 ~ 14116336 (+)
G227895 NA non-coding downstream 6142 14427101 ~ 14427328 (+)
G227896 NA non-coding downstream 7226 14428185 ~ 14428586 (+)
LOC120553441 NA non-coding downstream 79842 14500801 ~ 14547427 (+)
G227935 NA non-coding downstream 100145 14521104 ~ 14521760 (+)
G227948 NA non-coding downstream 349018 14769977 ~ 14770247 (+)
LOC120553485 tmem60,LOC101486292,LOC104924613,LOC103382814,LOC100699021 other upstream 408638 14002132 ~ 14004905 (+)
trnal-caa_22 NA other upstream 611340 13802093 ~ 13802203 (+)
trnal-caa_21 NA other upstream 611783 13801648 ~ 13801760 (+)
trnak-cuu_12 NA other upstream 638484 13774987 ~ 13775059 (+)
trnal-caa_20 NA other upstream 643366 13770066 ~ 13770177 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other downstream 33634 14454593 ~ 14462474 (+)
LOC120553256 gsap,LOC102790605 other downstream 747645 15168604 ~ 15203041 (+)
lrrc17 LOC103355197,LOC103382847 other downstream 879563 15300522 ~ 15331178 (+)
prickle1b prickle1 other downstream 1021026 15441985 ~ 15471887 (+)
yaf2 yaf2,LOC102236902 other downstream 1073718 15494677 ~ 15511178 (+)

Expression


Co-expression Network