LOC120553359 (v1ar1,LOC100695840,LOC101485029)


Basic Information

Item Value
gene id LOC120553359
gene name v1ar1,LOC100695840,LOC101485029
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4688927 ~ 4696183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791702.1
AGCGTCGCTCCGATTCAAAGCAGGAGTTGCTGTGCGCCACGGGTGGAAAAATAATTGTGGATTTTGCTTTATGACTTTTGAGCAGTTCCCTTCGCGCGCAACCCGGTGATAATCCCATACATGTTGGAGTAATCGGCGAGTTTCAGTCACAGTCACCCGGTGGTGACGGTAGCGCACAGGCAGGCGGACAGACACCTCGGCGCGCACGGAGGACAAGCGGCCACCATGCTCTTCCCCTGGGAGAGCTCCTGCAACACCACGGGCACAAACTGCACCGACGGGTCCAACTCAACGCAGCCGCTGGAGTCCGGTGCGGCCGCCGGAGACATCGGCGGGAAGAGAAATGACACCGACCCGTTCGGACGGAACGAGGACGTGGCCAAGCTCGAGATCACCGTCCTGAGCCTCGCGTTCCTCGCGGCGGTGGTGGGGAACGTGAGCGTGCTGCTGGCCATGTACAAAACGCGGCGGAAGCTGTCGCGCATGCACCTGTTCATGAAGCACCTGAGCCTGGCGGACCTGGTGGTGGCCTTCTTCCAGGTGCTTCCGCAGCTCTGCTGGGAGGTCACCTACCGCTTCCACGGCCCGGACTTCCTGTGCCGCGTCGTCAAGCACCTGCAGGTGTTGGGCATGTTCGCCTCCACCTacatgatggtgatgatgaccCTGGACCGCTACATCGCCATCTGCCACCCGCTGCAGACGCTCCAGCAGCCGACGCAGCGCGCGCACATCATGATCGGCTCGACGTGGGCGTGCAGCCTGGTGCTCAGCAGCCCGCAGTACTTCATCTTCTCCCTGAGCGAGGTGCACCCCGGCTCGGCCGTCTACGACTGCTGGGGACACTTCGTGGAGCCGTGGGGGCTGCGCGCGTACGTCACCTGGACGACGGTCGGGATCTTCCTCGTGCCGGTGGCCGTGCTCGTGTTCTGCTACGGACTCATCTGCCGCACCATCTGGATGAACCTCAAGTACAAGACCCGGAGGAACAAGACCGCGGGCTCCGCGGCGGAGTCCAAAACCGGGGTCCTGAGCCGGAGCTCGGTCAGCAGCGTCAGCACCATCTCCCGCGCCAAATTACGCACGGTGAAGATGACTTTCGTGATCGTGCTGGCGTACGTGGTGTGCTGGGCGCCTTTCTTCACCGTGCAGATGTGGTCCGTGTGGGACAAGACCTTCTCCTGGGACGACTCCGAGAACACCACGGTGACGCTTGCCGCCCTGCTGGCCAGCCTCAACAGCTGTTGCAACCCCTGGATCTACATGATCTTCAGCGGCCACCTCCTCTCGGACTTTGCGGGCAGCATGCAGTGCTGCCGCCCGCTGAAGGCCAAGTTAAACCAACAGGATTCGGTCAGCAGCAGCCGCCGGACCACGCTGCTGTCCCGCCTGCAGGGTCCGCGCCTCTCGGAGCCGTTCAGAGACCTCAACCCACCCCCTGAAACCTGCCCGCAGCTCCCATCTGCATCCTGAACACTGGAAACACTGCCTGTTGTGTCCGTAAAACATGAACTGGTCTCAGTCTGCTGGCTTGTAGCGGCGAAGGAAGGTATGATCTCATTTGAGGGCGCGGTCAAATCTACAGCTCGCTTATTTTGGTCCGATCCGTAGTGGAAATGTTTACTCTGTGGCAAATGTTCGGTGCTTGTTTCTTTTAGCTTCACACGGctgctagaaaaaaaaaaaagagttttaatGACGCTTCTCAGTCTGCCAGGTTGGAGATTTTGTGGGTTTAAAACGGAGCCAAAACAAATCCAGTCACTTTAACTTCAGCTATTAGCATGCTGGTCTTGTCTGTGCTATTTGCTGTAATGTAACTTCTTTAGAATCATCTGTTGACACTGAGATTCATTTTGTGATGCATGAGTAAACTATAGCTTTCGTATGTCAACATGCATGTCTCTATACCCATGAGCCCAGGAGCTGTATGTGGGGTTGTTTTCTATAGATCTGTGAGATTATAGTCAGTGAGGGAACTTGGTATAACAAAGCTAACTACTCGCACATAACGACTGTTGagctatttgtgaaaatgatttgGGCGTGACGACTGCTGGGACCAAGTTGGACCGGTCCGGGTCTGTCCCAGCCTGGGTCAGTAATGTGTCACAGCGCAGTCtcaacactttaaaaaaaggtaCTAGTGCAGCAGCAACTAATgactattttcattatcaattaatctgacagttattttcttgattgttGGTTAATCATTTGGTCTAGAAAATGTCcgcaaatagtaaaaaaaaatgcccttcagtattttcccaaaaaaaagtttacatATTCAAATCCTTCGTTTTGTAGAACTATCAGTTGAAACGTCAAAGTTTAAGGTCagaaaaccagcaaatatttaTGTTTGAAGAGCTGGAATTTGGggtaattttctttaaaaaaaaaatacaaaaaaaaaaaaaaaatcgacttTAGCAATTTATCTCAAATTTGTTGCTGATTCATTTCTAAGTTTATCAGCTCTAAAAGGTGCACTTATTTCCGTCATGCATAATTATTATCACTTTGGCTATTAAATGGAAGAGTGATAAAGATAATCACATTGCACTTTGTttagcacacaaaaaaataacattaaccCTGTGAATACACTTCTTTTGAAACATGGTTGATTTGACTTATGATGTctagacacacgcacacagcttTGCATTAATGGGGTCCGCTCTCTTTATAGATTTTCCCagatgtgttgttgttgtaaagATGTTTCGTCAGTGTAATGTTTCCTGTCATctatatattgtaatatattgCACATGCAAAGAAAGATAAATATTATTCCTTGTATCGTCA

Function

NR:

description
arg8-vasotocin receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791702.1 True 2820 mRNA 0.51 2 4688927 4696183

Neighbor

gene id symbol gene type direction distance location
kics2 clg23h12orf66,LOC103364500 coding upstream 94785 4590710 ~ 4594142 (+)
LOC120553579 rab3ip coding upstream 125655 4543173 ~ 4563272 (+)
upf2 upf2 coding upstream 166313 4495890 ~ 4522614 (+)
slc35e3 slc35e3 coding upstream 196040 4483461 ~ 4492887 (+)
LOC120553538 LOC100693972,LOC102796305,LOC102207118,LOC102289868,LOC101481412 coding upstream 240890 4200672 ~ 4448037 (+)
dmtf1 NA coding downstream 38079 4734262 ~ 4749242 (+)
LOC120553055 NA coding downstream 97104 4793287 ~ 4804242 (+)
LOC120553019 NA coding downstream 538967 5235150 ~ 5238344 (+)
kcnj8 kcnj8 coding downstream 686850 5383033 ~ 5392940 (+)
echdc3 echdc3,LOC102797483 coding downstream 697457 5393640 ~ 5399303 (+)
G225895 NA non-coding upstream 30296 4658184 ~ 4658631 (+)
G225892 NA non-coding upstream 32108 4656495 ~ 4656819 (+)
G225891 NA non-coding upstream 35567 4652967 ~ 4653360 (+)
G225847 NA non-coding upstream 198857 4489680 ~ 4490070 (+)
G225842 NA non-coding upstream 213800 4473611 ~ 4475127 (+)
G225901 NA non-coding downstream 12680 4708863 ~ 4709269 (+)
G225935 NA non-coding downstream 41152 4737335 ~ 4738306 (+)
G225942 NA non-coding downstream 58824 4755007 ~ 4758772 (+)
G225943 NA non-coding downstream 66817 4763000 ~ 4763729 (+)
G225955 NA non-coding downstream 167675 4863858 ~ 4868807 (+)
G225894 NA other upstream 30958 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 749973 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 847753 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 1154255 3534600 ~ 3534672 (+)
trnat-ugu_39 NA other upstream 1155266 3533589 ~ 3533661 (+)
abcc9 abcc9,LOC107387088 other downstream 585075 5281258 ~ 5373637 (+)
prkcq prkcq,LOC102789446 other downstream 1964337 6660520 ~ 6686639 (+)
snrpf snrpf,LOC106576293 other downstream 2622334 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 2626887 7323070 ~ 7332259 (+)
klhl42 klhl42 other downstream 2667142 7363325 ~ 7368216 (+)

Expression


Co-expression Network