trmu (trmu,LOC102792203)


Basic Information

Item Value
gene id trmu
gene name trmu,LOC102792203
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18524936 ~ 18530092 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791711.1
TTTTATTAAACGGGCCTCAAACATGGCTGCTCCTTgaagtgtatatatctatgcttgaagtgacaatggagacttttttttgttatataagAAAATAGTATTAACACTATTTGTAGTTTTAAAAAATGGGTTTTATTAGGCACGTCGTGTGCGCCATGTCCGGCGGCGTTGACAGCTCTGTCGCGGCGTTGTTACTAAAGAGAagtgGTTACAGTGTAACAGGAGTTTTCATGAAGAACTGGGACTCCCTGGATGAGAGAGGGGTGTGTACCACAGAGAAAGACTGTGAGGACGCCTACAGAGTGTGTCAGACCCTGGACATCCCCTTCCATCAAGTGTCCTATGTCAAAGAGTACTGGCATGAGGTTTTCAGTAAACTATTGAAGGAATACGAGAAGGGGAGGACGCCCAACCCAGATATACTATGCAACAAGCACATCAAATTCAACCATTTCCACAAGTATGCTATCAACACTCTGGGTGCTGATGCCATGGCAACAGGCCACTACGCCAGGACGTCTCAGGAAGACGAAGAGGTTTTCCAACAGACACCCATAGCGCCGCCGATCACTCTTTTTAGAAATCGGTTTGAGATTAGAAATCCGGTGAGGTTGTACAAAGGAGCAGATCTCCTCAAAGACCAAACCTTCTTCCTCAGTCAGATCTCCCAGGATGCCTTACGACAAACCATGTTCCCATTGGCCGGACTCACCAAAGAGTTTGTTAAGAAGATTGCTGCTGAGGCAGGGTTTCACCATGTGCTGAAGAAAaaagagAGCATGGGCATCTGCTTCATTGGAGagagaaactttgaaaactttATTTTGGAGTATCTGGAACCTAAACCAGGGAACTTTGTCTCCATTGAAGACGGGGCTGTCATGGGAACACACAATGGCTGGTTCACTCTGACACTGGGCCAGAGGGCGAGAATTGGAGGGCAGAGAGACCCCTGGTTTGTGGTGGACAAAGACATTGCTACTGGAGATGTGTTTGTGGCTCCAACTACCAATCACCCAGCTCTTTTCCGTGACACGGTGCGAACGGAACGCTTCCACTGGGTAACAGTTGACCCACCTCCTGAACTAGTCAAGACCCATATGATGGATTGTCATTTCCGCTTCATCCACCAGATGCCGCTCACTCCCTGTACAGTGACACTCAACATGAACGGCTCTTTGTGGATCTCACTctcccagccaatcagagctctgACACCTGGACAGTTTGCTGTGCTCTACAAAGGAGACGAGTGTCTGGGTAGTGGGAAGATCGTACAACTGGGGCCCAGTGAATACACACTCCAGCAGGGCAGAGAACGCTTGGCAGCAGCCGCGCAGCACGGGGAGCAGCAGACGCCTGAACCAGCCAGCTGAGATGAGCTCACAGACGGCCGTGGTGGAAATGAGCTCTGTCCGGTACATTAGGTAGAGCACACTGTTCATGAAAATAAACCGTCTCTTAGACGTGGCTCTACGGCAGAGGGCCTGTTCTGGAGGCCATATTAGAAACTGTAAACgggtgtttgtttttaaatgcataTTGATAAAACAAGGACAAAAGGGTTACTCTCTGCTCTGTTTTTAGTATTTTGTGTTTAGACACTGAGAGGTTATCTGTGAGCTGCTCTGAACCATCTGCATCCAGGCCAAAGTGTGTTTTTTGAGTGTAGACTAGATGGTAATAAGTTTACTAACCAACAGtaatctcatttaaaaaaaatgaatcaagcTTTTCCGTCTATTTACTGTTATATATATCATTAGATCGACAACGACACAGGTACAGTATGTCTGTTTCTGCTTGTGATATACACGGGGTTGCCATTATTTATACTTCAGCAATCCTCCATTGAACGTTCACGGTGTCATTAGGTCAGCCATTATGCATTGCAAAGACCTTTCACCTTGACGTAATGGTAATAAAGGCAAGACATTCATATACTTGATCTGGAATTTAAGAGGTGCTGGATGTATTTTCAGTTGCCACAATTGTGGTTATCCTTTGGAATTGAAGTTGTCATATCTAAAACTAAAATCAAGctcacttttaaaaaaagtattcaGCTCTAAAATGATTTAGCAGATGGAAAACAATCCATAAAGCTAATGTTTTATTTGGAGAGTTTTTGTCTTATAGTACTCAATGTTATGACCTGTGGTCTGTAAGAAAGGTCTTTTTCAAGGATGCTCGTAGTCTGAGCCCTTTACTGTTTTCTTTATTGCAGTTGTAGGAAACCTGTGAGTGACCCTGGGAAATGGAGGCTTACTGTAGGAGAGTGGTGGGATTTGACTCTAAGCTAGCAGGGGGTTACTTGTGGGTCAAGACATGGTGGACACATTTTTTTTGCCCATCTTATCTGTGAATGAAAGCGTCCCTGATATTCTCTTGTTTGTCCAGTATAACGTGATTCAAACTTTCCGTTTACTGTAGCTTTTCCTGTCATCTCTAAGGCTGCTCATGTTGTTCATGAAGTTCCCTCCTGTCCTTTACCTTTCCTTCTGATTGACTGTAACTCCTGTTCACCCTGCCTCTGTGCCAACGGCACATCTACTGAACAGTACGTTGGTGATTGATGTTAATCTATGACTCTACTTGGTTCTTTGAATCattctcattttctttttgtttgttaattgattaattaagtTTACGCTTTAGTACTAAAGTAGAAACAAAGTACAGAGTAGTTACTCTGCACCCTTATGTTTTCTCCTCTAAGGAGAAGTGATGTACAAGAGTGGTATTGGTCGACAGGATAAATCATTGCCTAGAAACATGCCAAGTTAACAAACATTTGCAACAGAATATGATTTAATAAAACGTATTTGTTATACACGCAAGTCACATATTTGAGAGAGATAATTCAATTGTTCTATATAGTTAAAAAGGCAATGGAATTCTTTATACAAGTGCCTTTCTCTAAATGGTGTTGTAACTACTGTAAATACCTGAACATTTACAAATAAGAGAATAAACCTTATAAATGA

Function

symbol description
trmu Predicted to enable ATP binding activity; sulfurtransferase activity; and tRNA binding activity. Acts upstream of or within mitochondrial tRNA thio-modification. Predicted to be active in mitochondrion. Is expressed in several structures, including blastoderm; blastodisc; gut; sensory system; and swim bladder. Used to study inner ear disease. Human ortholog(s) of this gene implicated in aminoglycoside-induced deafness; infantile liver failure syndrome; and transient infantile liver failure. Orthologous to human TRMU (tRNA mitochondrial 2-thiouridylase).

NR:

description
mitochondrial tRNA-specific 2-thiouridylase 1

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0016783 sulfurtransferase activity molecular_function

KEGG:

id description
K21027 TRMU, SLM3; tRNA-5-taurinomethyluridine 2-sulfurtransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791711.1 True 2990 mRNA 0.43 11 18524936 18530092

Neighbor

gene id symbol gene type direction distance location
celsr1a NA coding downstream 1059 18429107 ~ 18523877 (-)
tbc1d22a tbc1d22a,LOC106927306,LOC103356476 coding downstream 254185 18134084 ~ 18270751 (-)
zbed4 zbed4,LOC102794369 coding downstream 941053 17576138 ~ 17583883 (-)
creld2 creld2 coding downstream 954288 17565571 ~ 17570648 (-)
LOC120553454 LOC104933464,LOC108241015,LOC102202158 coding downstream 1193558 17306223 ~ 17331378 (-)
tprkb tprkb coding upstream 3546 18533638 ~ 18535642 (-)
LOC120553458 cpne8,LOC104935575,LOC103365370,LOC101074159 coding upstream 31004 18561096 ~ 18652690 (-)
LOC120553351 NA coding upstream 137029 18667121 ~ 18705237 (-)
LOC120553632 abcd2 coding upstream 180922 18711014 ~ 18731666 (-)
bcat1 NA coding upstream 767830 19297922 ~ 19309684 (-)
LOC120553191 NA non-coding downstream 177939 18304585 ~ 18346997 (-)
G228522 NA non-coding downstream 924751 17517663 ~ 17600185 (-)
LOC120552976 NA non-coding downstream 1122104 17402248 ~ 17402832 (-)
G228474 NA non-coding downstream 1249459 17272948 ~ 17275477 (-)
G228439 kdm5a non-coding downstream 1280956 17243465 ~ 17243980 (-)
G228684 NA non-coding upstream 25961 18556053 ~ 18558509 (-)
G228683 NA non-coding upstream 28509 18558601 ~ 18559279 (-)
G228713 NA non-coding upstream 351069 18881161 ~ 18884075 (-)
G228731 NA non-coding upstream 363548 18893640 ~ 18975820 (-)
G228759 NA non-coding upstream 484563 19014655 ~ 19022242 (-)
gramd4a gramd4,LOC103376144 other downstream 103529 18363259 ~ 18421407 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other downstream 423941 17830616 ~ 18100995 (-)
G228465 NA other downstream 1222738 17295122 ~ 17302198 (-)
slc37a3 slc37a3 other downstream 1504201 17007724 ~ 17020735 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 1701504 16748842 ~ 16823432 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 208304 18738396 ~ 18823090 (-)
sox5 sox5 other upstream 498517 19028609 ~ 19270336 (-)
G228934 fam19a2,LOC103364248 other upstream 1203010 19733102 ~ 19807098 (-)
etv6 etv6 other upstream 1276722 19806814 ~ 19839350 (-)
rerg rerg other upstream 1536803 20066895 ~ 20122393 (-)

Expression


Co-expression Network