Gene
RNA
| Item | Value |
|---|---|
| gene id | tprkb |
| gene name | tprkb |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053134.1 |
| NCBI id | CM020931.1 |
| chromosome length | 29109922 |
| location | 18533638 ~ 18535642 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| tprkb | Predicted to be involved in tRNA threonylcarbamoyladenosine modification and telomere maintenance via recombination. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 5. Orthologous to human TPRKB (TP53RK binding protein). |
| description |
|---|
| EKC/KEOPS complex subunit TPRKB |
| id | description |
|---|---|
| K15901 | CGI121, TPRKB; EKC/KEOPS complex subunit CGI121/TPRKB |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039791712.1 | True | 946 | mRNA | 0.42 | 4 | 18533638 | 18535642 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| trmu | trmu,LOC102792203 | coding | downstream | 3546 | 18524936 ~ 18530092 (-) |
| celsr1a | NA | coding | downstream | 9761 | 18429107 ~ 18523877 (-) |
| tbc1d22a | tbc1d22a,LOC106927306,LOC103356476 | coding | downstream | 262887 | 18134084 ~ 18270751 (-) |
| zbed4 | zbed4,LOC102794369 | coding | downstream | 949755 | 17576138 ~ 17583883 (-) |
| creld2 | creld2 | coding | downstream | 962990 | 17565571 ~ 17570648 (-) |
| LOC120553458 | cpne8,LOC104935575,LOC103365370,LOC101074159 | coding | upstream | 25454 | 18561096 ~ 18652690 (-) |
| LOC120553351 | NA | coding | upstream | 131479 | 18667121 ~ 18705237 (-) |
| LOC120553632 | abcd2 | coding | upstream | 175372 | 18711014 ~ 18731666 (-) |
| bcat1 | NA | coding | upstream | 762280 | 19297922 ~ 19309684 (-) |
| dnai7 | NA | coding | upstream | 810676 | 19346318 ~ 19353491 (-) |
| LOC120553191 | NA | non-coding | downstream | 186641 | 18304585 ~ 18346997 (-) |
| G228522 | NA | non-coding | downstream | 933453 | 17517663 ~ 17600185 (-) |
| LOC120552976 | NA | non-coding | downstream | 1130806 | 17402248 ~ 17402832 (-) |
| G228474 | NA | non-coding | downstream | 1258161 | 17272948 ~ 17275477 (-) |
| G228439 | kdm5a | non-coding | downstream | 1289658 | 17243465 ~ 17243980 (-) |
| G228684 | NA | non-coding | upstream | 20411 | 18556053 ~ 18558509 (-) |
| G228683 | NA | non-coding | upstream | 22959 | 18558601 ~ 18559279 (-) |
| G228713 | NA | non-coding | upstream | 345519 | 18881161 ~ 18884075 (-) |
| G228731 | NA | non-coding | upstream | 357998 | 18893640 ~ 18975820 (-) |
| G228759 | NA | non-coding | upstream | 479013 | 19014655 ~ 19022242 (-) |
| gramd4a | gramd4,LOC103376144 | other | downstream | 112231 | 18363259 ~ 18421407 (-) |
| tafa5a | fam19a5,LOC103356475,LOC102793695 | other | downstream | 432643 | 17830616 ~ 18100995 (-) |
| G228465 | NA | other | downstream | 1231440 | 17295122 ~ 17302198 (-) |
| slc37a3 | slc37a3 | other | downstream | 1512903 | 17007724 ~ 17020735 (-) |
| G228291 | LOC103356441,LOC102298269,LOC102212027 | other | downstream | 1710206 | 16748842 ~ 16823432 (-) |
| LOC120553633 | slc2a13,LOC103369283 | other | upstream | 202754 | 18738396 ~ 18823090 (-) |
| sox5 | sox5 | other | upstream | 492967 | 19028609 ~ 19270336 (-) |
| G228934 | fam19a2,LOC103364248 | other | upstream | 1197460 | 19733102 ~ 19807098 (-) |
| etv6 | etv6 | other | upstream | 1271172 | 19806814 ~ 19839350 (-) |
| rerg | rerg | other | upstream | 1531253 | 20066895 ~ 20122393 (-) |
