pparaa (ppara)


Basic Information

Item Value
gene id pparaa
gene name ppara
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17116753 ~ 17135130 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791719.1
CGTTATTTCCTGCAGAGGATGAGCGGAGGTTTGACAGCACGCAGGGAGACGACGCATCAAGTGGTTTTTAGCAGAGCCGAAGCGGGATCTGAACGTCCCGCGACCCGACCGAGGCGTCCATCCCGGCAGCAGCATCTGGAAATGCTTCGGATAGCAGCCGCTGAGTCTGGTGAGTAAGGGGTTGTTCCTCCCAGGTTCAGCTTGATCTCCACCATGGCAGGGGATCTCTTTAGCCCCCCGTCCCCACTTGGGGATTCCCTGCTGGACAGTCCGCTGTGTGGAGACCTGATGGCTGATCTTCACGACATCTCCCAGTCTATAGAAGATGACACGTTGGGATTTGATTTCCCGGTGTACCAGAGCACTGGCTCGGGGTCTGAGAGCTCCATCGCACTGGACACCTTGACCCCGGCCTCCAGCCCGTCGTCGGGGGTGTGTGGAGCAGCGCCGGGCCCAGAGGAGAGTTTCAGCCCCCTCAACCTGGAGTGCCGGGTGTGCTCAGACAAGGCCTCAGGCTTCCACTACGGGGTGCATGCCTGTGAGGGCTGCAAGGGTTTCTTCAGAAGGACCATCCGGCTGAAGCTGGAGTATGATAAGTGTGAACGCAACTGCAAAATCCAAAAGAAGAACCGCAACAAGTGCCAGTACTGCCGATTTCACAAGTGCCTCTCTGTGGGCATGTCCCACAACGCTATTCGGTTTGGTCGGATGCCTCAGGCGGAGAAGCTAAAGCTAAAGGCAGAAAGCAAGATGGTGGAGAAAGAGGTGGCAAGCCCCATGCTGGCCGACCACAAGATTCTGGTCAGACAGATCCACGAAGCCTACATGAAAAACTTCAACATGAACAAGGCGAAAGCTCGGCTCATACTCACCGGAAAGACCAGCAAGCCGCCTTTCATCATTCACGACATGGAGACGTTCCAGCTGGCAGAAAGGACGTTTGCGGCCCATATGGTAAACAATGACTGTCCGGAGCCCGAGAGTGGCCTTCAAGAAGGGGCGGTGGTTCCGGCTGCGGGGTGTAGGGAGCTCCAGCAGAGGGAGGCTGAAGCCAGGCTCTTCCACTGCTGCCAGAGCACCTCGGTGGAGACTGTCACCGAGCTGACGGAGTTCGCCAAGGCGGTGCCGGGTTTCCAGAGCCTGAATCTGAATGATCAAGTGACTCTCTTGAAGTACGGTGTTTACGAAGCCCTCTTCACGCTCCTGGCCTCCTGCATGAACAAAGACGGCCTCCTGGTGGCCCGCGGTGGAGGCTTCATCACCCGAGAGTTCCTCAAGAGCCTCCGGCGGCCATTTAGCGACATGATGGAGCCCAAATTCCAGTTTGCCGCACGCTTCAACTCCCTGGAGCTGGACGACAGTGACCTGGCCCTTTTTGTGGCAGCCATCATCTGCTGCGGAGaTCGCCCTGGCCTGGTGGAGGTGCCTCTAGTGGAGCGGCTGCAGGAAAGCATCGTTCAGGCACTACGGCTCCACCTGCTGGCCAATCACCCGGACGACACCTTCCTCTTTCCCAGACTGCTACAGAAACTGGCCGACCTCCGAGAGCTGGTCACCGAGCACGCGCAGTTGGTTCAGGAAATCGAGACATCAGAGGACACGTCGCTGCACCCGCTCCTGCAAGAGATATACAGGGACATGTACTGAGAAGATGGCACACGATCAGGGACAGGGACATGTATTAGAATATGTATGTATGCCACTCTAAACTGGGTGTCCATACATATTTACTTAAACTATCAAGCATATCACTGTACTGTAATTTGCTTAATGTGCAGCTTCTATGGGTGCACACTGCTGTGATCTGCAGTGTTTGCATTAAGACTCTTAAGTCTttttactggaacaaaaccTAATGAAATTATTTGGGGGGGGAGGCAGCTATTGTAGGTGGCATGCCTGCTTCCATGAAAGGGGACACAGAGGGGAACAAAGTGTTTGATCTTACACCGTAGATGTGTcgagatatatttttttaaatgcattgattTTTAACTTGGAGCACCCAAATGCTATGGAGTGGGTTCTGGATGCCAGCTTTTACTCTACACACTGAACAAAAGGTGAATAGGGAGAAGGCTATGCAAATGTGCCTAGCATTTAAAATGGGTGCACACATCTAAAAGCTACCAGGATGTGACTGCTGCAGTTACTCAATATTAATTTTTTCCTGTGAACAAGTTGAATTGTGGTAAAAGAAGCATAGAAGTTATAACATTTTTAATCTTTGAGGCAACTGAAATGTTTGTTGTGCAATATAGGCACTACAACTAAATACCGGGCATATTCCTAATATTTTGGATATTTAGTGCATATGATATGTTAATTTAAGTCACTTGGATTTAGTTAATATAATTGTCATGTCCTTTCAGTGTCTACTAGCTGTGCCACATCTCCATTTTGAGCTTAGTGGTTGAAGAAACTTAGTATTCACCAAGTGCCATAACGTTTCAGTGCCTCAGCTCATATTTTAACCGCACCTTATACATTCACCTCATAAAAAATCTAGTTAGACTTTTTTTCCAAGTAGAAACAAGTTTAACTTTTTAGTGTTGGATCAGGGAATGTTCTCACATCATAAATCATGAACAATAGTGCATTTTTAACAGGCAATGACCTAAAAAAAATACCTTACTTCTTCTGTAAGCAGCCATCATTGTAATTTCATGTGTAATATATTAATTTTATTACTTTACCCTACTGATAAATACCAACACAACATGATAGCTGCCCAACCTATTTTTTCagaatttgttttgtacaaATCCTGTTGTTAAGATACATTATTGGCCAGTTAATATTTTGATCACAAACTCTGATGATAAGAtggtttatgttttattttgtaaatataaCAGAAGAATGTGCTGACCACAGTGAAAGGGATGTATGTATCTGCATGCAGAAAAACAGGCATCAAAAAGAGGAGGTGATTGCCTCATTTGCTGTCTGTATTATTGAAACTGTTTATATTTTATCATGTACAGTAgtgtacaattaaaaaaaatgcatttgctgTTTCAATAAAA

Function

symbol description
ppara Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; steroid hormone receptor activity; and ubiquitin conjugating enzyme binding activity. Involved in several processes, including negative regulation of lipid storage; regulation of lipid metabolic process; and regulation of nucleobase-containing compound metabolic process. Acts upstream of or within negative regulation of protein kinase B signaling; negative regulation of transforming growth factor beta receptor signaling pathway; and positive regulation of viral genome replication. Located in nucleoplasm. Implicated in Alzheimer's disease; coronary artery disease; hepatocellular carcinoma; lipid metabolism disorder; and myocardial infarction. Biomarker of cystic fibrosis and fatty liver disease.

NR:

description
LOW QUALITY PROTEIN: peroxisome proliferator-activated receptor alpha

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08701 NR1D3; nuclear receptor subfamily 1 group D member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791719.1 True 3029 mRNA 0.47 8 17116753 17135130

Neighbor

gene id symbol gene type direction distance location
cdpf1 cdpf1 coding downstream 300 17114008 ~ 17116453 (-)
LOC120553682 NA coding downstream 4310 17109537 ~ 17112443 (-)
sapcd1 NA coding downstream 129198 16983903 ~ 16987555 (-)
prdm4 prdm4,LOC102777312 coding downstream 137718 16972532 ~ 16979035 (-)
tmem209 tmem209 coding downstream 144306 16965571 ~ 16972447 (-)
atxn10 atxn10 coding upstream 61811 17196941 ~ 17207454 (-)
LOC120553673 NA coding upstream 73496 17208626 ~ 17220357 (-)
trim24 LOC103366983 coding upstream 87204 17222334 ~ 17234693 (-)
LOC120553454 LOC104933464,LOC108241015,LOC102202158 coding upstream 171093 17306223 ~ 17331378 (-)
creld2 creld2 coding upstream 430441 17565571 ~ 17570648 (-)
G228363 NA non-coding downstream 109753 16952943 ~ 17007000 (-)
G228360 NA non-coding downstream 166947 16914607 ~ 16949806 (-)
G228295 NA non-coding downstream 285514 16824829 ~ 16831239 (-)
G228290 NA non-coding downstream 369713 16746743 ~ 16747040 (-)
G228283 NA non-coding downstream 580460 16536018 ~ 16536293 (-)
G228401 NA non-coding upstream 2140 17137270 ~ 17138275 (-)
G228423 NA non-coding upstream 86075 17221205 ~ 17222228 (-)
G228439 kdm5a non-coding upstream 108335 17243465 ~ 17243980 (-)
G228474 NA non-coding upstream 137818 17272948 ~ 17275477 (-)
LOC120552976 NA non-coding upstream 267118 17402248 ~ 17402832 (-)
slc37a3 slc37a3 other downstream 96018 17007724 ~ 17020735 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 293321 16748842 ~ 16823432 (-)
G228191 NA other downstream 1324900 15771238 ~ 15791853 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other downstream 2026770 15055475 ~ 15089983 (-)
grm8a grm8 other downstream 2063468 14634110 ~ 15053285 (-)
G228465 NA other upstream 159992 17295122 ~ 17302198 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other upstream 695486 17830616 ~ 18100995 (-)
gramd4a gramd4,LOC103376144 other upstream 1228129 18363259 ~ 18421407 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 1603266 18738396 ~ 18823090 (-)
sox5 sox5 other upstream 1893479 19028609 ~ 19270336 (-)

Expression


Co-expression Network